Applying the bioisosterism strategy to obtain lead compounds against SARS-CoV-2 cysteine proteases: An in-silico approach.

SARS-CoV-2 cysteine proteases are essential nonstructural proteins due to their role in the formation of the virus multiple enzyme replication-transcription complex. As a result, those functional proteins are extremely relevant targets in the development of a new drug candidate to fight COVID-19. Based on this fact and guided by the bioisosterism strategy, the present work has selected 126 out of 1050 ligands from DrugBank website. Subsequently, 831 chemical analogs containing bioisosteres, some of which became structurally simplified, were created using the MB-Isoster software, and molecular docking simulations were performed using AutoDock Vina. Finally, a study of physicochemical properties, along with pharmacokinetic profiles, was carried out through SwissADME and ADMETlab 2.0 platforms. The promising results obtained with the molecules encoded as DB00549_BI_005, DB04868_BI_003, DB11984_BI_002, DB12364_BI_006 and DB12805_BI_004 must be confirmed by molecular dynamics studies, followed by in vitro and in vivo empirical tests that ratify the advocated in-silico results.

Neuroradiological features of patients with bilateral macronodular adrenocortical disease and meningiomas associated or not with genetic variants of ARMC5- a case series.

INTRODUCTION: Meningiomas are the most common primary brain and central nervous system tumors, accounting for approximately 40% of these tumors. The most important exams for the radiological study of meningiomas are computed tomography (CT) and magnetic resonance imaging (MRI). We aimed to analyze the radiological features of patients with meningioma related to the simultaneous presence of bilateral macronodular adrenocortical disease (BMAD), with or without pathogenic variants of ARMC5. METHODS: This study included 10 patients who were diagnosed with BMAD. All of them had a radiological diagnosis of expansive brain lesions suggestive of meningioma. All patients underwent brain MRI and a neuroradiolgist analyzed the following parameters: number, site and size of lesions; presence of calcification, edema and bone involvement. RESULTS AND DISCUSSION: Eight patients presented with germline variants of ARMC5; the other 2, did not. The most significant result was the incidence of multiple meningiomas, which was 50% in BMAD patients, whereas the average incidence described thus far is lower than 10%. Considering location, the 22 tumors in the BMAD patients were 5 convexity tumors (22.7%), and 17 skull base tumors (77.2%), the opposite proportion of patients without BMAD. A total of 40.9% of the tumors had calcification, 9% had cerebral edema and 40.9% had bone invasion due to hyperostosis. The literature describes meningioma calcification in 25% of patients, bone invasion by tumor hyperostosis in 20%, and cerebral edema in approximately 60%. CONCLUSION: Relevant results were found considering the rate of multiple meningiomas and tumor location. This finding reinforces the need for further research into the neurological effects caused by genetic variants of ARMC5 in patients with BMAD.

FSSH-2: Fewest Switches Surface Hopping with Robust Switching Probability.

This study introduces the FSSH-2 scheme, a redefined and numerically stable adiabatic Fewest Switches Surface Hopping (FSSH) method for mixed quantum-classical dynamics. It reformulates the standard FSSH hopping probability without using nonadiabatic coupling vectors and allows for numerical time integration with larger step sizes. The advantages of FSSH-2 are demonstrated by numerical experiments for five different model systems in one and two spatial dimensions with up to three electronic states.

The reality of epilepsy in primary care in Rio de Janeiro: the importance of educational projects for better patient care.

BACKGROUND: The Basic Health Unit (Unidade Básica de Saúde - UBS, in Portuguese) is the first point of contact in the public healthcare system for people with epilepsy. Primary care professionals need to appropriately diagnose, treat, and refer, if necessary, to tertiary services. OBJECTIVE: To evaluate the knowledge of UBS professionals on the management of patients with epilepsy in Rio de Janeiro. METHODS: Online questionnaires were performed on the topic of epilepsy before and after exposure to classes taught by epileptologists. RESULTS: A total of 66 doctors participated, 54.5% of whom were residents or trained in family medicine. The majority had from 1 to 3 years of practice. Insecurity prevailed in the management of pregnant women and the elderly. Around 59.1% of the participants referred patients with seizures without examinations. A total of 78% of the participants did not correctly classify seizure types, and 2/3 did not define drug-resistant epilepsy. Induction and broad-spectrum drugs were common. The therapeutic decision depended on availability in the basic health unit (UBS) (81.8%), dosage (60.6%), side effects (34.8%), and age (36.4%). Comorbidities and sex influenced 1/4 of the sample. For 23% of the participants, the type of crisis did not affect the choice. Regarding typical non-pharmacological options, 75% of the participants were aware of cannabidiol, 40.9% of surgery, 22.7% of ketogenic diet, and 22.8% of deep brain stimulation/vagus nerve stimulation (DBS/VNS). A total of 90.2% indicated the need for training. CONCLUSION: There are deficits in the knowledge of UBS professionals in the management of epilepsy. Specialized training is imperative to optimize the care offered within SUS.

ANTECEDENTES: A Unidade Básica de Saúde (UBS) é o primeiro contato no sistema público de saúde para pessoas com epilepsia. Profissionais de atenção primária precisam diagnosticar, tratar e encaminhar adequadamente, se necessário, a serviços terciários. OBJETIVO: Avaliar o conhecimento dos profissionais das UBSs sobre o manejo de pacientes com epilepsia no Rio de Janeiro. MéTODOS: Foram realizados questionários online sobre o tema da epilepsia pré e pós exposição a aulas ministradas por epileptólogos. RESULTADOS: Participaram 66 médicos, sendo 54,5% residentes ou formados em medicina da família. A maioria tinha de 1 a 3 anos de prática. A insegurança prevaleceu no manejo de gestantes e idosos. Cerca de 59,1% dos participantes encaminhavam pacientes com crises sem exames. Um total de 78% dos participantes não classificou corretamente tipos de crises, e 2/3 não definiram epilepsia farmacorresistente. Fármacos indutores e de amplo espectro foram comuns. A decisão terapêutica dependeu da disponibilidade na Unidade Básica de Saúde (UBS) (81,8%), posologia (60,6%), efeitos colaterais (34,8%) e idade (36,4%). Comorbidades e sexo influenciaram 1/4 da amostra. Para 23% dos participantes, o tipo de crise não afetou a escolha. Quanto a opções não farmacológicas típicas, 75% conheciam o canabidiol, 40,9% a cirurgia, 22,7% a dieta cetogênica, 22,8% a estimulação cerebral profunda/estimulação do nervo vago (ECP/ENV). Um total de 90,2% dos participantes indicou necessidade de treinamento. CONCLUSãO: Há déficits no conhecimento dos profissionais das UBSs no manejo da epilepsia. O treinamento especializado é imperativo para otimizar o cuidado oferecido no âmbito do SUS.

Investigating the correlation between genotype and phenotype in Prader-Willi syndrome: a study of 45 cases from Brazil.

BACKGROUND: Prader-Willi syndrome (PWS) is a genetic disorder characterized by abnormalities in the 15q11-q13 region. Understanding the correlation between genotype and phenotype in PWS is crucial for improved genetic counseling and prognosis. In this study, we aimed to investigate the correlation between genotype and phenotype in 45 PWS patients who previously underwent methylation-sensitive high-resolution melting (MS-HRM) for diagnosis. RESULTS: We employed methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA) and Sanger sequencing, along with collecting phenotypic data from the patients for comparison. Among the 45 patients, 29 (64%) exhibited a deletion of 15q11-q13, while the remaining 16 (36%) had uniparental disomy. No statistically significant differences were found in the main signs and symptoms of PWS. However, three clinical features showed significant differences between the groups. Deletion patients had a higher prevalence of myopia than those with uniparental disomy, as well as obstructive sleep apnea and an unusual skill with puzzles. CONCLUSIONS: The diagnostic tests (MS-HRM, MS-MLPA, and Sanger sequencing) yielded positive results, supporting their applicability in PWS diagnosis. The study's findings indicate a general similarity in the genotype-phenotype correlation across genetic subtypes of PWS.

Disseminated paracoccidioidomycosis in a captive western black-handed tamarin (Saguinus niger).

Paracoccidioidomycosis (PCM) is an endemic fungal disease that occurs in Latin America and primarily affects humans. The disease has been rarely documented in non-human primates. This report details a disseminated and fatal case of PCM caused by Paracoccidioides brasiliensis in a western black-handed tamarin (Saguinus niger) under human care. Histopathological examination revealed extensive pyogranulomatous inflammation in the lungs, spleen, liver, lymph nodes, kidneys, epididymis, right testicle, heart, adrenal gland and intestines, associated with characteristic yeast forms consistent with Paracoccidioides spp and confirmed by immunohistochemistry. Molecular analysis indicated a high nucleotide similarity with P. brasiliensis sequences for both the 18S rRNA and gp43 genes. This naturally occurring infection highlights the susceptibility of these animals to PCM and their role in ecoepidemiology warrants further investigation.

Tratamento de manifestação bucal exacerbada da doença de mão, pé e boca com apdt / Exacerbated oral manifestations of hand, foot and mouth disease: case report / Manifestaciones orales exacerbadas de la enfermedad de manos, pies y boca: reporte de un caso

Introdução: A doença da mão, pé e boca (DMPB) é uma infecção viral contagiosa que afeta principalmente crianças, mas também pode afetar adultos. É causada por diferentes tipos de enterovírus, sendo o CV-A16 e o EV-A71 os mais comuns. A transmissão ocorre pelo contato direto com fluidos corporais infectados ou por meio de objetos contaminados. Apresenta sintomas como febre, dor de garganta, falta de apetite e erupções cutâneas nas mãos, pés e boca. Embora a maioria dos casos seja leve e resolva- se espontaneamente, complicações graves, incluindo problemas neurológicos, podem ocorrer. O diagnóstico geralmente é clínico, com base nos sintomas e nas características das lesões. O tratamento é sintomático, com o uso de analgésicos e antitérmicos para aliviar a dor e a febre. No caso de lesões bucais graves a terapia fotodinâmica antimicrobiana (aPDT) em combinação com a fotobiomodulação com laser de baixa potência tem sido utilizada como uma abordagem promissora. A aPDT é capaz de eliminar microrganismos, incluindo vírus, independentemente de sua resistência aos antimicrobianos, e a fotobiomodulação auxilia na modulação da resposta inflamatória, alívio da dor e na cicatrização. Os lasers de baixa potência são a fonte de luz mais adequada para a fotoinativação viral, devido à sua interação precisa com o fotossensibilizante e a capacidade de fornecer a energia necessária para o efeito virucida. Metodologia: Relato de caso qualitativo e descritivo. Objetivo: Este relato de caso tem como objetivo descrever o tratamento de lesões bucais graves da DMPB combinando aPDT e fotobiomodulação com laser de baixa potência. Resultados: O tratamento mostrou resultados promissores no alívio dos sintomas e na melhora do quadro clínico. Conclusão: Mesmo em manifestações exacerbadas da doença de mão, pé e boca, podemos notar melhoras significativas nas lesões bucais após a aPDT com azul de metileno em combinação com a fotobiomodulação com laser de baixa potência.

Introduction: Hand, foot and mouth disease (HFMD) is a contagious viral infection that mainly affects children, but can also affect adults. It is caused by different types of enterovirus, with CV-A16 and EV-A71 being the most common. Transmission occurs through direct contact with infected body fluids or through contaminated objects. Symptoms include fever, sore throat, lack of appetite and rashes on the hands, feet and mouth. Although most cases are mild and resolve spontaneously, serious complications, including neurological problems, can occur. Diagnosis is usually clinical, based on the symptoms and characteristics of the lesions. Treatment is symptomatic, with the use of analgesics and antipyretics to relieve pain and fever. In the case of severe mouth lesions, antimicrobial photodynamic therapy (aPDT) in combination with low-power laser photobiomodulation has been used as a promising approach. aPDT is capable of eliminating microorganisms, including viruses, regardless of their resistance to antimicrobials, and photobiomodulation helps to modulate the inflammatory response, relieve pain and promote healing. Low-power lasers are the most suitable light source for viral photoinactivation, due to their precise interaction with the photosensitizer and their ability to provide the necessary energy for the virucidal effect. Methodology: Qualitative and descriptive case report. Objetive: This case report aims to describe the treatment of severe oral lesions of BPPD by combining aPDT and low-power laser photobiomodulation. Results: The treatment showed promising results in relieving symptoms and improving the clinical picture. Conclusion: Even in exacerbated manifestations of hand, foot and mouth disease, we can see significant improvements in mouth lesions after aPDT with methylene blue in combination with low-power laser photobiomodulation.

Introducción: La enfermedad de manos, pies y boca (EMPB) es una infección vírica contagiosa que afecta principalmente a los niños, aunque también puede afectar a los adultos. Está causada por diferentes tipos de enterovirus, siendo el CV-A16 y el EV-A71 los más comunes. La transmisión se produce por contacto directo con fluidos corporales infectados o a través de objetos contaminados. Los síntomas incluyen fiebre, dolor de garganta, falta de apetito y erupciones en manos, pies y boca. Aunque la mayoría de los casos son leves y se resuelven espontáneamente, pueden producirse complicaciones graves, incluidos problemas neurológicos. El diagnóstico suele ser clínico, basado en los síntomas y las características de las lesiones. El tratamiento es sintomático, con el uso de analgésicos y antipiréticos para aliviar el dolor y la fiebre. En el caso de lesiones bucales graves, la terapia fotodinámica antimicrobiana (aPDT) en combinación con la fotobiomodulación láser de baja potencia se ha utilizado como un enfoque prometedor. La aPDT es capaz de eliminar los microorganismos, incluidos los virus, independientemente de su resistencia a los antimicrobianos, y la fotobiomodulación ayuda a modular la respuesta inflamatoria, aliviar el dolor y favorecer la cicatrización. Los láseres de baja potencia son la fuente de luz más adecuada para la fotoinactivación viral, debido a su interacción precisa con el fotosensibilizador y a su capacidad para proporcionar la energía necesaria para el efecto virucida. Metodología: Caso clínico cualitativo y descriptivo. Objetivo: Este caso clínico pretende describir el tratamiento de lesiones orales severas de BPPD mediante la combinación de aPDT y fotobiomodulación con láser de baja potencia. Resultados: El tratamiento mostró resultados prometedores en el alivio de los síntomas y la mejora del cuadro clínico. Conclusión: Incluso en las manifestaciones exacerbadas de la enfermedad de manos, pies y boca, podemos observar mejoras significativas en las lesiones bucales tras la aPDT con azul de metileno en combinación con fotobiomodulación con láser de baja potencia.

Manifestação atípica do herpes zóster em boca: relato de caso / Atypical manifestation of herpes zoster in the mouth: case report / Manifestación atípica de herpes zoster en boca: reporte de caso

O herpes-zóster é uma infecção viral causada pela reativação do vírus da varicela-zóster (VZV) sendo os ramos do nervo trigêmeo afetados em até 20% dos casos. Apresenta-se comumente com dor em queimação e caracteristicamente, o zoster se manifesta como uma erupção vesicular unilateral que aparece na face, cabeça, tronco e até mesmo nas extremidades, variando de lesão leve e de rápida cicatrização à lesões graves e extensas com duração de semanas. Embora se reconheça que o zoster pode ocorrer sem exantema, classicamente apresenta-se como dermátomo unilateral, doloroso e/ou pruriginoso. A terapia fotodinâmica antimicrobiana (aPDT) tem sido indicada como uma modalidade promissora no tratamento de potenciais lesões infecciosas. Neste trabalho será relatado o caso clínico de um paciente diagnosticado com herpes zóster com manifestação atípica e que recebeu tratamento medicamentoso convencional associado à aPDT.

Herpes zoster is a viral infection caused by the reactivation of the varicella zoster virus (VZV), with the branches of the trigeminal nerve affected in up to 20% of cases. It commonly presents with burning pain and characteristically, zoster manifests as a unilateral vesicular eruption appearing on the face, head, trunk, and even the extremities, ranging from a mild, rapidly healing lesion to severe, extensive lesions lasting up to weeks. Although it is recognized that zoster can occur without rash, it classically presents as a unilateral, painful and/or pruritic dermatome. Antimicrobial photodynamic therapy (aPDT) has been indicated as a promising modality in the treatment of potential infectious lesions. In this work, the clinical case of a patient diagnosed with herpes zoster with atypical manifestation and who received conventional drug treatment associated with aPDT will be reported.

El herpes zóster es una infección vírica provocada por la reactivación del virus de la varicela zóster (VZV), con afectación de las ramas del nervio trigémino hasta en un 20% de los casos. Comúnmente se presenta con dolor ardiente y característicamente, el zoster se manifiesta como una erupción vesicular unilateral que aparece en la cara, la cabeza, el tronco e incluso las extremidades, que van desde una lesión leve que cura rápidamente hasta lesiones graves y extensas que duran semanas. Aunque se reconoce que el herpes zoster puede ocurrir sin exantema, clásicamente se presenta como un dermatoma unilateral, doloroso y/o pruriginoso. La terapia fotodinámica antimicrobiana (aPDT) se ha indicado como una modalidad prometedora en el tratamiento de posibles lesiones infecciosas. En este trabajo se reportará el caso clínico de un paciente diagnosticado de herpes zoster con manifestación atípica y que recibió tratamiento farmacológico convencional asociado a TFPa.

Atypical Tibial Fracture Treated with Osteosynthesis Associated with Total Knee Arthroplasty: Case Report / Fratura atípica de tíbia tratada com osteossíntese associada a artroplastia total do joelho: Relato de caso

Abstract Bisphosphonates are widely used in the treatment of osteoporosis but predispose the patient to the appearance of atypical fractures. The femoral subtrochanteric region is usually affected, but other bones can be as well. Atypical tibia fractures in patients with severe gonarthrosis is a therapeutic challenge. The present work reports the case of an elderly patient with advanced gonarthrosis who presented atypical tibial fracture. The patient made prolonged use of bisphosphonates for osteoporosis, presenting with pain and functional limitation resulting from gonarthrosis, which progressed to sudden pain in the right tibial metaphysis, preventing ambulation. The radiographs showed bilateral severe arthrosis; marked varism; tibial and femoral medial erosion; and fracture in the proximal third of the right tibial diaphysis. The fracture and arthrosis on the right side were treated by osteosynthesis with blocked plaque and total knee arthroplasty with posterior stabilization and fixed base. After physical rehabilitation, significant improvement of pain and function was reported, independent gait was reacquired and a range of motion of 0 to 100º was reached. After one year, the radiographs showed fracture consolidation and satisfactory alignment of the lower limbs' axes. The coexistence of severe arthrosis and atypical fracture made treatment difficult. However, the result was satisfactory and the approach with simultaneous osteosynthesis and arthroplasty proved to be adequate.

Resumo Bifosfonatos são amplamente usados no tratamento da osteoporose; porém, predispõem ao surgimento de fraturas atípicas. A região subtrocantérica femoral é usualmente acometida, mas outros ossos também são afetados. Fraturas atípicas da tíbia em pacientes portadores de gonartrose grave são um desafio terapêutico. O presente trabalho relata o caso de uma paciente idosa com gonartrose avançada que apresentou fratura atípica tibial. A paciente fazia uso prolongado de bifosfonatos para osteoporose, com quadro de dor e limitação funcional decorrentes da gonartrose, que progrediu para dor súbita na metáfise tibial à direita, impedindo a deambulação. Radiografias evidenciaram artrose grave bilateral; varismo acentuado; erosão medial tibial e femoral; e fratura no terço proximal da diáfise tibial direita. Trataram-se a fratura e a artrose à direita por osteossíntese com placa bloqueada e artroplastia total do joelho com estabilização posterior e base fixa. Após reabilitação física, relatou-se melhora significativa da dor e da função, readquiriu-se a marcha independente e alcançou-se arco de movimento de 0 a 100º. Após um ano, as radiografias mostraram consolidação da fratura e alinhamento satisfatório dos eixos dos membros inferiores. A coexistência de artrose grave e fratura atípica dificultou o tratamento. Contudo, o resultado foi satisfatório e a abordagem com osteossíntese e artroplastia simultâneas mostrou-se adequada.

Pluralismo evolutivo e o ideal de unificação da biologia / Evolutionary pluralism and the ideal of a unified biology

Resumo A evolução biológica é frequentemente considerada um eixo central e unificador da biologia. O artigo discute aspectos históricos desse ideal de unificação, bem como os seus sinais de desintegração entre os anos 1960 e 1980. Argumentamos que apesar das novas propostas de síntese do conhecimento biológico, a biologia evolutiva contemporânea é caracterizada por um pluralismo. Os principais pontos a favor do pluralismo evolutivo são discutidos, e algumas consequências dessa perspectiva são apresentadas, particularmente em relação ao ideal de unificação da biologia. Por fim, defendemos um pluralismo evolutivo crítico do ideal de unificação como um objetivo da ciência, mas ainda favorável a integrações locais.

Abstract Biological evolution is often regarded as a central and unifying axis of biology. This article discusses historical aspects of this ideal of unification, as well as signs of its disintegration from the 1960s to 1980s. We argue that despite new proposals for the synthesis of biological knowledge, contemporary evolutionary biology is characterized by pluralism. The main points in favor of evolutionary pluralism are discussed and some consequences of this perspective are presented, particularly in terms of the ideal of a unified biology. Finally, we defend an evolutionary pluralism that critiques the ideal of unification as a scientific objective, but still favors local integrations.

Surveillance of hemorrhagic fever and/or neuroinvasive disease: challenges of diagnosis

ABSTRACT OBJECTIVE To evaluate the performance of post mortem laboratory analysis in identifying the causes of hemorrhagic fever and/or neuroinvasive disease in deaths by arbovirus infection. METHODS Retrospective cross-sectional study based on the differential analysis and final outcome obtained in patients whose samples underwent laboratory testing for arboviruses at the Pathology Center of the Adolfo Lutz Institute, in São Paulo, Brazil. RESULTS Of the 1355 adults clinically diagnosed with hemorrhagic fever and/or neuroinvasive disease, the most commonly attributed cause of death and the most common final outcome was dengue fever. Almost half of the samples tested negative on all laboratory tests conducted. CONCLUSION The failure to identify the causative agent in a great number of cases highlights a gap in the diagnosis of deaths of unknown etiology. Additional immunohistochemical and molecular assessments need to be added to the post-mortem protocol if all laboratory evaluations performed fail to identify a causative agent. While part of our findings may be due to technical issues related to sample fixation, better information availability when making the initial diagnosis is crucial. Including molecular approaches might lead to a significant advancement in diagnostic accuracy.

Restricted feeding modulates peripheral clocks and nutrient sensing pathways in rats

ABSTRACT Objective: Feeding restriction in rats alters the oscillators in suprachiasmatic, paraventricular, and arcuate nuclei, hypothalamic areas involved in food intake. In the present study, using the same animals and experimental protocol, we aimed to analyze if food restriction could reset clock genes ( Clock, Bmal1 ) and genes involved in lipid metabolism ( Pgc1a, Pparg, Ucp2 ) through nutrient-sensing pathways ( Sirt1, Ampk, Nampt ) in peripheral tissues. Materials and methods: Rats were grouped according to food access: Control group (CG, food ad libitum ), Restricted night-fed (RF-n, food access during 2 h at night), Restricted day-fed (RF-d, food access during 2 h in the daytime), and Day-fed (DF, food access during 12 h in the daytime). After 21 days, rats were decapitated at ZT3 (0900-1000 h), ZT11 (1700-1800 h), or ZT17 (2300-2400 h). Blood, liver, brown (BAT) and peri-epididymal (PAT) adipose tissues were collected. Plasma corticosterone and gene expression were evaluated by radioimmunoassay and qPCR, respectively. Results: In the liver, the expression pattern of Clock and Bmal1 shifted when food access was dissociated from rat nocturnal activity; this phenomenon was attenuated in adipose tissues. Daytime feeding also inverted the profile of energy-sensing and lipid metabolism-related genes in the liver, whereas calorie restriction induced a pre-feeding increased expression of these genes. In adipose tissues, Sirt1 expression was modified by daytime feeding and calorie restriction, with concomitant expression of Pgc1a , Pparg , and Ucp2 but not Ampk and Nampt . Conclusion: Feeding restriction reset clock genes and genes involved in lipid metabolism through nutrient-sensing-related genes in rat liver, brown, and peri-epididymal adipose tissues.

Surveillance of hemorrhagic fever and/or neuroinvasive disease: challenges of diagnosis

OBJECTIVE: To evaluate the performance of post mortem laboratory analysis in identifying the causes of hemorrhagic fever and/or neuroinvasive disease in deaths by arbovirus infection. METHODS: Retrospective cross-sectional study based on the differential analysis and final outcome obtained in patients whose samples underwent laboratory testing for arboviruses at the Pathology Center of the Adolfo Lutz Institute, in São Paulo, Brazil. RESULTS: Of the 1355 adults clinically diagnosed with hemorrhagic fever and/or neuroinvasive disease, the most commonly attributed cause of death and the most common final outcome was dengue fever. Almost half of the samples tested negative on all laboratory tests conducted. CONCLUSION: The failure to identify the causative agent in a great number of cases highlights a gap in the diagnosis of deaths of unknown etiology. Additional immunohistochemical and molecular assessments need to be added to the post-mortem protocol if all laboratory evaluations performed fail to identify a causative agent. While part of our findings may be due to technical issues related to sample fixation, better information availability when making the initial diagnosis is crucial. Including molecular approaches might lead to a significant advancement in diagnostic accuracy. DESCRIPTORS: Autopsy. Hemorrhagic Fevers, Viral, etiology. Arbovirus Infections, mortality

Genomics and epidemiology of the P 1 SARS-CoV-2 lineage in Manaus, Brazil

Cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in Manaus, Brazil, resurged in late 2020 despite previously high levels of infection. Genome sequencing of viruses sampled in Manaus between November 2020 and January 2021 revealed the emergence and circulation of a novel SARS-CoV-2 variant of concern. Lineage P.1 acquired 17 mutations, including a trio in the spike protein (K417T, E484K, and N501Y) associated with increased binding to the human ACE2 (angiotensin-converting enzyme 2) receptor. Molecular clock analysis shows that P.1 emergence occurred around mid-November 2020 and was preceded by a period of faster molecular evolution. Using a two-category dynamical model that integrates genomic and mortality data, we estimate that P.1 may be 1.7- to 2.4-fold more transmissible and that previous (non-P.1) infection provides 54 to 79% of the protection against infection with P.1 that it provides against non-P.1 lineages. Enhanced global genomic surveillance of variants of concern, which may exhibit increased transmissibility and/or immune evasion, is critical to accelerate pandemic responsiveness.

Remoção de terceiro molar em seio maxilar com uso de técnica minimamente invasiva: relato de caso / Removal of the third molar in the maxillary sinus using the minimally invasive technique: case report.

O seio maxilar é uma estrutura anatômica pneumatizada e localizada na região anterior da maxila bilateralmente. A ocorrência do deslocamento de corpos estranhos no seio maxilar não é uma condição comum, e quando presente está associada a acidentes automobilísticos, acidentes por arma de fogo, distúrbios psiquiátricos e iatrogenias em procedimentos cirúrgicos. A remoção do corpo estranho é realizada a fim de prevenir infecções, podendo a permanência do corpo estranho oferecer danos imediatos ou crônicos. O acesso ao seio maxilar é realizado mais comumente pela técnica de acesso Caldwell-Luc. Desta forma, o objetivo do estudo é relatar um caso clínico de remoção cirúrgica de um terceiro molar superior do interior do seio maxilar pela técnica de acesso Caldwell-Luc, com auxílio de um guia cirúrgico a fim de conduzir uma cirurgia mais segura e menos invasiva

The maxillary sinus is a pneumatized anatomical structure located bilaterally in the anterior region of the maxilla. The occurrence of displacement of foreign bodies in the maxillary sinus is not a common condition and when present, it is associated with car accidents, fire arm accidents, psychiatric disorders and iatrogenies in surgical procedures. The removal of the foreign body is carried out in order to prevent infections, and the permanence of the foreign body may offer immediate or chronic damage. Access to the maxillary sinus is most commonly performed using the Caldwell-Luc access technique. Thus, the objective of the study is to report a clinical case of surgical removal of a maxillary third molar from the interior of the maxillary sinus using the caldwell-luc access technique, with the aid of a surgical guide in order to conduct a safer and less invasive surgery.

Validation of chromogenic in situ hybridization reactions for DNA and RNA detection in formalin-fixed paraffin-embedded tissue / Validação das reações de hibridização in situ cromogênica para detecção de DNA e RNA em tecidos fixados em formalina e incluídos em parafina

ABSTRACT Introduction: Chromogenic in situ hybridization (CISH) is used alternatively to the traditional immunohistochemical methods for the diagnosis of infectious diseases in formalin-fixed paraffin-embedded samples, since it presents high sensitivity and specificity. This type of sample undergoes several chemical modifications during histological processing, and both poor and excessive fixation can impair sample quality, making it difficult to obtain good results. In CISH, it is common to use positive samples as quality control for the reactions; however, this practice does not provide any information regarding the preservation of the genetic material, nor does it avoid false-negative results. Objective: The objective of this study was to validate the deoxyribonucleic acid (DNA) (+) and (-), and ribonucleic acid (RNA) (+) and (-) control probes to be used as quality control for the samples, evaluating preservation of the genetic material. Materials and methods: Twelve histological sections were used (in quadruplicate, n = 48), prepared from a pool of tissues without microscopic changes related to infectious and/or inflammatory processes. The CISH protocol was conducted according to the manufacturer's instructions, standardized under the conditions of our laboratory, using commercial DNA and RNA probes chemically linked to digoxigenin. Results and conclusion: Our results were very satisfactory, showing high reproducibility, accuracy, sensitivity and analytical specificity, high predictive values for positive and negative assays and with zero ratio of false-positive and false-negative results, allowing the validation of this reaction.

RESUMEN Introducción: La hibridación in situ cromogénica (CISH) es una alternativa a los métodos tradicionales inmunohistoquímicos para el diagnóstico de enfermedades infecciosas en muestras fijadas en formoly embebidas enparafina, puesto que tiene alta sensibilidad y especificidad. Este tipo de muestra sufre diversas modificaciones químicas durante elprocesamiento histológico, y tanto la mala fijación cuanto la fijación excessiva pueden perjudicar la calidad de las muestras, impidiendo buenos resultados. En la CISH, es común el empleo de muestras positivas para control de calidad de reacciones; sin embargo, esta práctica no proporciona ninguna información acerca de la preservación del material genético. Objetivo: El propósito de este estudio ha sido realizar la validación de las sondas comerciales para ácido desoxirribonucleico (ADN) (+) y (-) y ácido ribonucleico (ARN) (+) y (-), para que sean utilizadas como control de calidad, evaluando la preservación del material genético en las muestras testadas. Material y métodos: Se incluyen en el estudio 12 cortes histológicos (en cuadruplicado, n = 48), confeccionados a partir de un pool de tejidos sin alteraciones microscópicas relacionadas con procesos infecciosos y/o inflamatorios. El protocolo de CISH se desarrolló de acuerdo a las instrucciones del fabricante y bajo las condiciones del nuestro laboratorio, haciendo uso de sondas comerciales de ADN y ARN quimicamente ligadas a digoxigenina. Resultados y conclusión: Nuestros resultados han sido muy satisfactorios, demostrando alta reproducibilidad, exactitud, sensibilidad, y especificidad analítica, así como altos valores predictivos para ensayos positivos y negativos, y con proporción nula de falsos negativos y falsos positivos, lo que ha permitido la validación de esa reacción.

RESUMO Introdução: A hibridização in situ cromogênica (CISH) é uma alternativa aos métodos tradicionais imuno-histoquímicospara diagnóstico de doenças infecciosas em amostras fixadas em formalina e incluídas em parafina, visto que apresenta grande sensibilidade e especificidade. Esse tipo de amostra sofre diversas modificações químicas durante o processamento histológico, e tanto a má fixação quanto a fixação em excesso podem prejudicar a qualidade das amostras, inviabilizando bons resultados. Na CISH, é comum a utilização de amostras positivas como controle de qualidade das reações; entretanto essa prática não fornece nenhuma informação a respeito da preservação do material genético, nem evita resultados falso-negativos nas amostras testadas. Objetivo: O objetivo deste estudo foi realizar a validação das sondas comerciais para ácido desoxirribonucleico (DNA) (+) e (-) e ácido ribonucleico (RNA) (+) e (-), para serem utilizadas como controle de qualidade, avaliando apreservação do material genético nas amostras testadas. Materiais e métodos: Foram utilizados 12 cortes histológicos (em quadruplicata, n = 48), confeccionados a partir de um pool de tecidos sem alterações microscópicas relacionadas com processos infecciosos e/ou inflamatórios. O protocolo de CISH foi conduzido de acordo com as instruções do fabricante e padronizado conforme as condições do nosso laboratório, utilizando sondas comerciais de DNA e RNA quimicamente ligadas à digoxigenina. Resultados e conclusão: Nossos resultados foram muito satisfatórios, demonstrando alta reprodutibilidade, acurácia, sensibilidade e especificidade analítica, bem como altos valores preditivos para ensaios positivos e negativos e com proporção nula de resultados falso-negativos e falso-positivos, o que possibilitou a validação dessa reação.

Patologia morfológica e molecular aplicadas à inovação diagnóstica e vigilância da leishmaniose visceral / Morphological and molecular pathology applied to diagnostic innovation and surveillance of visceral leishmaniasis

O conceito de Saúde Única surgiu para ressaltar a união indissociável entre a saúde animal, humana e ambiental. Nesse contexto, a leishmaniose visceral americana (LVA) é considerada uma importante doença de saúde pública no Brasil, devido a sua crescente expansão geográfica e aumento na incidência de casos humanos. A LVA é uma doença parasitária, zoonótica, causada pela Leishmania (Leishmania) infantum (syn. chagasi) e transmitida por flebotomíneos do gênero Lutzomyia. Os cães são considerados os principais reservatórios do parasito nas áreas urbanas. O diagnóstico da LVA é baseado em aspectos epidemiológicos, clínicos e laboratoriais. A demonstração da presença do parasito através de exames diretos em tecidos biológicos do hospedeiro é o diagnóstico de escolha, principalmente, em municípios em que a transmissão de LVA ainda não tenha sido confirmada. Diversas metodologias podem ser aplicadas com essa finalidade. O objetivo desse trabalho é apresentar as técnicas citológicas, anatomo-patológicas e moleculares em amostras fixadas em formalina e incluídas em parafina para o diagnóstico da leishmaniose visceral em humanos e cães. Esses dados são complementares à apresentação realizada no I Simpósio Internacional de Leishmaniose Visceral, realizado nos dia 23 e 24 de Abril de 2018, e organizado pelo Instituto Adolfo Lutz em São Paulo-SP, Brasil.

The One Health concept emerged to highlight the inseparable link between animal, human and environmental health. In this context, American Visceral Leishmaniasis (AVL) is considered an important public health disease in Brazil, due to its increasing geographic expansion and in the incidence of human cases. AVL is a parasitic and zoonotic disease caused by Leishmania (Leishmania) infantum (syn. chagasi) and transmitted by sandflies of the genus Lutzomyia. Dogs are considered the main reservoirs of the parasite in urban areas. The diagnosis of AVL is based on epidemiological, clinical and laboratory aspects. The demonstration of the presence of the parasite through direct examinations in biological tissues of the host is the diagnosis of choice, mainly in municipalities where the transmission of AVL has not yet been confirmed. Several methodologies can be applied for this purpose. The objective of this work is to present the cytological, anatomopathological and molecular techniques in formalin fixed and paraffin embedded samples for the diagnosis of visceral leishmaniasis in humans and dogs. These data are complementary to the present study at the First International Symposium on Visceral Leishmaniasis, held on April 23 and 24, 2018, and organized by Adolfo Lutz Institute in São Paulo, Brazil.

Patologia morfológica e molecular aplicadas à inovação diagnóstica e vigilância da leishmaniose visceral / Morphological and molecular pathology applied to diagnostic innovation and surveillance of visceral leishmaniasis

O conceito de Saúde Única surgiu para ressaltar a união indissociável entre a saúde animal, humana e ambiental. Nesse contexto, a leishmaniose visceral americana (LVA) é considerada uma importante doença de saúde pública no Brasil, devido a sua crescente expansão geográfica e aumento na incidência de casos humanos. A LVA é uma doença parasitária, zoonótica, causada pela Leishmania (Leishmania) infantum (syn. chagasi) e transmitida por flebotomíneos do gênero Lutzomyia. Os cães são considerados os principais reservatórios do parasito nas áreas urbanas. O diagnóstico da LVA é baseado em aspectos epidemiológicos, clínicos e laboratoriais. A demonstração da presença do parasito através de exames diretos em tecidos biológicos do hospedeiro é o diagnóstico de escolha, principalmente, em municípios em que a transmissão de LVA ainda não tenha sido confirmada. Diversas metodologias podem ser aplicadas com essa finalidade. O objetivo desse trabalho é apresentar as técnicas citológicas, anatomo-patológicas e moleculares em amostras fixadas em formalina e incluídas em parafina para o diagnóstico da leishmaniose visceral em humanos e cães. Esses dados são complementares à apresentação realizada no I Simpósio Internacional de Leishmaniose Visceral, realizado nos dia 23 e 24 de Abril de 2018, e organizado pelo Instituto Adolfo Lutz em São Paulo-SP, Brasil. (AU)

The One Health concept emerged to highlight the inseparable link between animal, human and environmental health. In this context, American Visceral Leishmaniasis (AVL) is considered an important public health disease in Brazil, due to its increasing geographic expansion and in the incidence of human cases. AVL is a parasitic and zoonotic disease caused by Leishmania (Leishmania) infantum (syn. chagasi) and transmitted by sandflies of the genus Lutzomyia. Dogs are considered the main reservoirs of the parasite in urban areas. The diagnosis of AVL is based on epidemiological, clinical and laboratory aspects. The demonstration of the presence of the parasite through direct examinations in biological tissues of the host is the diagnosis of choice, mainly in municipalities where the transmission of AVL has not yet been confirmed. Several methodologies can be applied for this purpose. The objective of this work is to present the cytological, anatomopathological and molecular techniques in formalin fixed and paraffin embedded samples for the diagnosis of visceral leishmaniasis in humans and dogs. These data are complementary to the present study at the First International Symposium on Visceral Leishmaniasis, held on April 23 and 24, 2018, and organized by Adolfo Lutz Institute in São Paulo, Brazil. (AU)

Evaluation of benefits and accuracy of a mobile application in planning total knee arthroplasties / Avaliação de utilidade e acurácia de aplicativo móvel no planejamento de artroplastias totais do joelho

ABSTRACT Objective: To evaluate the usefulness of an application when planning total knee arthroplasties (TKA), besides the accuracy when measuring the anatomical-mechanical femoral angle (AMFA), comparing, also, the time spent during planning a TKA manually and by using the application. Methods: An interdisciplinary team involving health and computer science areas established activities in order to develop the application. After development, 24 physicians underwent an application usability test. Each one planned a primary total knee arthroplasty (TKA) initially, in a conventional manner and then by using the application. Data concerning AMFA measurement and time spent during planning were collected, in both manners. The Mann-Whitney and Wilcoxon tests were used to evaluate statistical significance related to angle and time. Results: Users considered it important checking AMFA and drawing the bone cut lines orthogonal to the mechanical axis, when planning TKAs. They also assessed that the application could be useful for training surgeons and for specialists. There was no statistically significant difference between the AMFA, as measured by the application and by the conventional manner. The planning time was shorter when the application was used (39% of the time spent manually). Conclusions: The application has proved to be useful in planning TKAs and has revealed accuracy when measuring the AMFA when it was compared to the manual form of preoperative planning. The application was able to reduce planning time by more than half and it demonstrated reliability in measuring the AMFA.

RESUMO Objetivo: Avaliar a utilidade de aplicativo no planejamento de artroplastias totais do joelho (ATJ), além da acurácia em relação à aferição do ângulo anatômico-mecânico femoral (AAMF), e comparar o tempo dispendido no planejamento de ATJ através da forma manual e do aplicativo. Métodos: Uma equipe interdisciplinar das áreas de saúde e ciências da computação estabeleceu um fluxo de atividades, a fim de desenvolver um aplicativo. Após desenvolvido, 24 médicos participaram de um teste de utilidade desse. Cada usuário planejou uma cirurgia de ATJ, inicialmente, de forma convencional e, posteriormente, através do aplicativo. Foram coletados dados de aferição do AAMF e do tempo dispendido durante o planejamento entre as duas formas. Os testes de Mann-Whitney e Wilcoxon foram usados para avaliar a significância estatística entre os resultados de medição de ângulo e tempo. Resultados: Os usuários julgaram importantes a aferição do AAMF e o traçado de linhas de corte ósseo ortogonais aos eixos mecânicos, no âmbito do planejamento de ATJ. Também avaliaram que o aplicativo poderia ser útil para cirurgiões em formação e especialistas. Não houve diferença estatisticamente significante entre o AAMF aferido através do aplicativo e da forma convencional. O tempo de planejamento foi menor quando o aplicativo foi usado (39% do tempo gasto pela forma manual). Conclusões: O aplicativo evidenciou-se útil no contexto de planejamento de ATJ, mostrou-se acurado quanto à medição do AAMF. Foi capaz de diminuir em mais da metade o tempo de planejamento, mostrou-se, mesmo assim, confiável quanto à medição do AAMF.