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1.
BMC Genomics ; 15: 23, 2014 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-24417976

RESUMO

BACKGROUND: Chlamydia pecorum is the causative agent of a number of acute diseases, but most often causes persistent, subclinical infection in ruminants, swine and birds. In this study, the genome sequences of three C. pecorum strains isolated from the faeces of a sheep with inapparent enteric infection (strain W73), from the synovial fluid of a sheep with polyarthritis (strain P787) and from a cervical swab taken from a cow with metritis (strain PV3056/3) were determined using Illumina/Solexa and Roche 454 genome sequencing. RESULTS: Gene order and synteny was almost identical between C. pecorum strains and C. psittaci. Differences between C. pecorum and other chlamydiae occurred at a number of loci, including the plasticity zone, which contained a MAC/perforin domain protein, two copies of a >3400 amino acid putative cytotoxin gene and four (PV3056/3) or five (P787 and W73) genes encoding phospholipase D. Chlamydia pecorum contains an almost intact tryptophan biosynthesis operon encoding trpABCDFR and has the ability to sequester kynurenine from its host, however it lacks the genes folA, folKP and folB required for folate metabolism found in other chlamydiae. A total of 15 polymorphic membrane proteins were identified, belonging to six pmp families. Strains possess an intact type III secretion system composed of 18 structural genes and accessory proteins, however a number of putative inc effector proteins widely distributed in chlamydiae are absent from C. pecorum. Two genes encoding the hypothetical protein ORF663 and IncA contain variable numbers of repeat sequences that could be associated with persistence of infection. CONCLUSIONS: Genome sequencing of three C. pecorum strains, originating from animals with different disease manifestations, has identified differences in ORF663 and pseudogene content between strains and has identified genes and metabolic traits that may influence intracellular survival, pathogenicity and evasion of the host immune system.


Assuntos
Chlamydia/genética , Genoma Bacteriano , Animais , Proteínas de Bactérias/classificação , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sequência de Bases , Células CACO-2 , Bovinos , Chlamydia/isolamento & purificação , Chlamydia/patogenicidade , Citotoxinas/classificação , Citotoxinas/genética , Citotoxinas/metabolismo , Fezes/microbiologia , Ácido Fólico/metabolismo , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Proteínas de Membrana/classificação , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Filogenia , Análise de Sequência de DNA , Ovinos , Líquido Sinovial/microbiologia , Sequências de Repetição em Tandem/genética , Triptofano/metabolismo
2.
Appl Environ Microbiol ; 78(8): 3033-6, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22327583

RESUMO

Several approaches for the inactivation of bacteriophage lambda, including UV germicidal irradiation (UVGI) and the chemical agents Virkon-S, Chloros, Decon-90, and sodium hydroxide (NaOH), were compared. Virkon, NaOH, and UVGI caused a ≥7-log(10) reduction in phage titers. This study successfully describes several methods with potential for bacteriophage inactivation in industrial settings.


Assuntos
Antivirais/metabolismo , Bacteriófago lambda/fisiologia , Viabilidade Microbiana/efeitos dos fármacos , Viabilidade Microbiana/efeitos da radiação , Raios Ultravioleta , Inativação de Vírus , Bacteriófago lambda/efeitos dos fármacos , Bacteriófago lambda/genética , Bacteriófago lambda/efeitos da radiação , Peróxidos , Compostos de Sódio , Ácidos Sulfúricos , Carga Viral
3.
J Bacteriol ; 193(16): 4276-7, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21685275

RESUMO

Chlamydophila abortus is a common cause of ruminant abortion. Here we report the genome sequence of strain LLG, which differs genotypically and phenotypically from the wild-type strain S26/3. Genome sequencing revealed differences between LLG and S26/3 to occur in pseudogene content, in transmembrane head/inc family proteins, and in biotin biosynthesis genes.


Assuntos
Chlamydophila/classificação , Chlamydophila/genética , Genoma Bacteriano , Variação Genética , Dados de Sequência Molecular
4.
Clin Vaccine Immunol ; 18(8): 1282-7, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21697340

RESUMO

Investigation of antigenic determinants of the microaerophilic obligate intracellular bacterium Lawsonia intracellularis using a mass spectrometry approach identified a novel bacterial protein present in an extract of cell culture medium aspirated from heavily infected in vitro cell cultures. Western immunoblotting analysis of SDS-PAGE-resolved proteins using immune sera pooled from L. intracellularis-infected pigs revealed the presence of a strongly immunoreactive band of ∼ 72 kDa. Liquid chromatography-electrospray ionization-tandem mass spectrometry analysis of this component and database mining using a fully annotated L. intracellularis genome sequence and the comprehensive GenBank prokaryotic genomic database highlighted the presence of a protein that shares little sequence similarity with other prokaryotic proteins and appears to be highly species specific. Detailed bioinformatic analyses identified the protein as member of the autotransporter protein family of surface-exposed proteins, and the designation LatA (Lawsonia autotransporter protein A) is suggested. Recognition of recombinant LatA on Western blots by a panel of sera from infected and control pigs corresponded 100% with a commercial serodiagnostic that relies on in vitro culture of this fastidious organism. LatA therefore represents a potential candidate for the development of a rapid and species-specific serodiagnostic reagent.


Assuntos
Antígenos de Bactérias/imunologia , Antígenos de Bactérias/metabolismo , Lawsonia (Bactéria)/imunologia , Lawsonia (Bactéria)/metabolismo , Proteínas de Membrana Transportadoras/imunologia , Proteínas de Membrana Transportadoras/metabolismo , Animais , Anticorpos Antibacterianos/sangue , Antígenos de Bactérias/análise , Western Blotting , Biologia Computacional , Infecções por Desulfovibrionaceae/diagnóstico , Infecções por Desulfovibrionaceae/veterinária , Imunoensaio , Lawsonia (Bactéria)/química , Espectrometria de Massas , Proteínas de Membrana Transportadoras/análise , Suínos
5.
Vet Microbiol ; 151(3-4): 284-90, 2011 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-21511408

RESUMO

This study used PCR-RFLP to investigate the genetic variability of pmp-encoding genes from fifty-two Chlamydophila abortus (C. abortus) strains originating from abortion cases from various geographical regions and host species. Six primer pairs were used to PCR-amplify DNA fragments encoding eighteen pmps. PCR products were digested using four restriction endonucleases and Bayesian methodologies were used to compare RFLP profiles and assign strains to a RFLP genotype. Strains could be assigned to 2 genotypes in the region encoding pmp18D, 3 genotypes in the regions encoding pmp1A-pmp2B, pmp3E-pmp6H and pmp11G-pmp15G, 4 genotypes in the region encoding pmp7G-pmp10G and 5 genotypes in the region encoding pmp16G-pmp17G. In all regions, the majority of strains (88.4-96.1%) had the same genotype as the reference strain S26/3. No correlation could be made between genotype, host species or geographical origin except for the two variant Greek strains, LLG and POS, which formed a discrete genotype in all pmp-encoding regions except pmp18D. Relative rates of evolution calculated for each pmp-encoding gene locus suggest that differing selective pressures and functional constraints may exist on C. abortus polymorphic membrane proteins. These findings suggest that although intraspecies heterogeneity of pmp-encoding genes in C. abortus is low, the sequence heterogeneity should be an important consideration when using pmps as the basis for novel diagnostics or vaccine development.


Assuntos
Aborto Animal/microbiologia , Proteínas da Membrana Bacteriana Externa/genética , Infecções por Chlamydophila/veterinária , Chlamydophila/genética , Variação Genética , Animais , Sequência de Bases , Teorema de Bayes , Chlamydophila/classificação , Primers do DNA/genética , Feminino , Genótipo , Geografia , Gado/microbiologia , Reação em Cadeia da Polimerase/métodos , Polimorfismo de Fragmento de Restrição , Gravidez
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