A priori calculations of the free energy of formation from solution of polymorphic self-assembled monolayers.

Modern quantum chemical electronic structure methods typically applied to localized chemical bonding are developed to predict atomic structures and free energies for meso-tetraalkylporphyrin self-assembled monolayer (SAM) polymorph formation from organic solution on highly ordered pyrolytic graphite surfaces. Large polymorph-dependent dispersion-induced substrate-molecule interactions (e.g., -100 kcal mol(-1) to -150 kcal mol(-1) for tetratrisdecylporphyrin) are found to drive SAM formation, opposed nearly completely by large polymorph-dependent dispersion-induced solvent interactions (70-110 kcal mol(-1)) and entropy effects (25-40 kcal mol(-1) at 298 K) favoring dissolution. Dielectric continuum models of the solvent are used, facilitating consideration of many possible SAM polymorphs, along with quantum mechanical/molecular mechanical and dispersion-corrected density functional theory calculations. These predict and interpret newly measured and existing high-resolution scanning tunnelling microscopy images of SAM structure, rationalizing polymorph formation conditions. A wide range of molecular condensed matter properties at room temperature now appear suitable for prediction and analysis using electronic structure calculations.

Time-resolved and temperature tuneable measurements of fluorescent intensity using a smartphone fluorimeter.

A smartphone fluorimeter capable of time-based fluorescence intensity measurements at various temperatures is reported. Excitation is provided by an integrated UV LED (λex = 370 nm) and detection obtained using the in-built CMOS camera. A Peltier is integrated to allow measurements of the intensity over T = 10 to 40 °C. All components are controlled using a smartphone battery powered Arduino microcontroller and a customised Android application that allows sequential fluorescence imaging and quantification every δt = 4 seconds. The temperature dependence of fluorescence intensity for four emitters (rhodamine B, rhodamine 6G, 5,10,15,20-tetraphenylporphyrin and 6-(1,4,8,11-tetraazacyclotetradecane)2-ethyl-naphthalimide) are characterised. The normalised fluorescence intensity over time of the latter chemosensor dye complex in the presence of Zn2+ is observed to accelerate with an increasing rate constant, k = 1.94 min-1 at T = 15 °C and k = 3.64 min-1 at T = 30 °C, approaching a factor of ∼2 with only a change in temperature of ΔT = 15 °C. Thermally tuning these twist and bend associated rates to optimise sensor approaches and device applications is proposed.

Conformation-Controlled Diplatinum(II)-Ferrocene Dyads to Achieve Long-Lived Charge-Separated States.

Square-planar polypyridyl platinum(II) complexes possess a rich range of structural and spectroscopic properties that are ideal for designing artificial photosynthetic centers. Taking advantage of the directionality in the charge-transfer excitation from the metal to the polypyridyl ligand, we describe here diplatinum(II)-ferrocene dyads, open-butterfly-like dyad 1 and closed-butterfly-like dyad 2, which were designed to understand the conformation and orientation effects to prolong the lifetime of charge-separated state. In contrast to the open-butterfly-like dyad 1, the closed-butterfly-like dyad 2 shows three-times long lifetime of charge separated state upon photoexcitation, demonstrating that the orientation in the rigid structure of dyad 2 is a very important issue to achieve long-lived charge separated state.

Amino acid-linked porphyrin-nitroimidazole antibiotics targeting Porphyromonas gingivalis.

The periodontal pathogen Porphyromonas gingivalis requires porphyrin supplementation for growth. Previously, in order to inhibit P. gingivalis growth, we synthesised very effective 'Trojan horse' ester and amide-linked deuterporphyrin-nitroimidazole (DPIX-Nim) adducts that exploited this requirement to transport metronidazole-derived antibiotics with excellent antimicrobial selectivity and recognition by the HA2 porphyrin binding site. Herein, in the context of developing topical agents to target P. gingivalis, l-amino acids are incorporated into adducts as linkers to improve uptake. Ten 13- and 17-propionic amide regioisomers of l-amino acid-linked deuterporphyrin-nitroimidazole adducts were synthesised using a peptide coupling approach. DPIX-Lys regioisomers without attached nitroimidazole were also synthesised as comparison compounds. All the porphyrin adducts bound (Kd50 7 to 20 nM) to a recombinant HA2 receptor with similar binding affinity to haem, except the lysine-proline linked DPIX-Lys(Boc)Pro-Nim adducts (Kd50 300 nM) and the DPIX-Lys(Nim)-Nim adducts (Kd50 200 nM), both of which have large appended groups. DPIX-Lys(Boc)-Nim, DPIX-Lys(OH)-Nim, and DPIX-Pro-Nim adducts were shown to be very effective against P. gingivalis. DPIX-Lys(Boc)Pro-Nim adducts and DPIX-Lys(Nim)-Nim adducts showed weak activity. Importantly, DPIX-Lys(Boc)-Nim adducts were selective for P. gingivalis and, unlike metronidazole, did not kill a range of other anaerobic bacteria isolated from the human gastrointestinal tract.

Nanostructuring of self-assembled porphyrin networks at a solid/liquid interface: local manipulation under global control.

Molecules of (5,10,15,20-tetraundecylporphyrinato)-copper(II) [(TUP)Cu] can self-assemble into four different polymorphs at the interface between highly oriented pyrolytic graphite and 1-octanoic acid. Scanning tunneling microscopy (STM) reveals that it is possible to combine the global control over monolayer structure, provided by the composition and concentration of the supernatant solution, with local control, from nanomanipulation by the STM tip. In the initially formed monolayer, with a polymorph composition governed by the concentration of (TUP)Cu in the supernatant solution, the exchange of molecules physisorbed at the solid/liquid interface with those in the liquid is very limited. By using a nanoshaving procedure at the tip, defects are created in the monolayer, and these serve as local manipulation sites to create domains of higher or lower molecular density, and to incorporate a second molecular species, (TUP)Co into the monolayer of (TUP)Cu.

Tunable self-assembly of triazole-linked porphyrin-polymer conjugates.

The convergence of supramolecular chemistry and polymer science offers many powerful approaches for building functional nanostructures with well-defined dynamic behaviour. Herein we report the efficient "click" synthesis and self-assembly of AB2 - and AB4 -type multitopic porphyrin-polymer conjugates (PPCs). PPCs were prepared using the copper(I)-catalysed azide-alkyne cycloaddition (CuAAC) reaction, and consisted of linear polystyrene, poly(butyl acrylate), or poly(tert-butyl acrylate) arms attached to a zinc(II) porphyrin core via triazole linkages. We exploit the presence of the triazole groups obtained from CuAAC coupling to direct the self-assembly of the PPCs into short oligomers (2-6 units in length) via intermolecular porphyrinatozinc-triazole coordination. By altering the length and grafting density of the polymer arms, we demonstrate that the association constant of the porphyrinatozinc-triazole complex can be systematically tuned over two orders of magnitude. Self-assembly of the PPCs also resulted in a 6 K increase in the glass transition temperature of the bulk material compared to a non-assembling PPC. The modular synthesis and tunable self-assembly of the triazole-linked PPCs thus represents a powerful supramolecular platform for building functional nanostructured materials.

Gold(III) porphyrins containing two, three, or four ß,ß'-fused quinoxalines. Synthesis, electrochemistry, and effect of structure and acidity on electroreduction mechanism.

Gold(III) porphyrins containing two, three, or four ß,ß'-fused quinoxalines were synthesized and examined as to their electrochemical properties in tetrahydrofuran (THF), pyridine, CH2Cl2, and CH2Cl2 containing added acid in the form of trifluoroacetic acid (TFA). The investigated porphyrins are represented as Au(PQ2)PF6, Au(PQ3)PF6, and Au(PQ4)PF6, where P is the dianion of the 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrin and Q is a quinoxaline group fused to a ß,ß'-pyrrolic position of the porphyrin macrocycle. In the absence of added acid, all three gold(III) porphyrins undergo a reversible one-electron oxidation and several reductions. The first reduction is characterized as a Au(III)/Au(II) process which is followed by additional porphyrin- and quinoxaline-centered redox reactions at more negative potentials. However, when 3-5 equivalents of acid are added to the CH2Cl2 solution, the initial Au(III)/Au(II) process is followed by a series of internal electron transfers and protonations, leading ultimately to triply reduced and doubly protonated Au(II)(PQ2H2) in the case of Au(III)(PQ2)(+), quadruply reduced and triply protonated Au(II)(PQ3H3) in the case of Au(III)(PQ3)(+), and Au(II)(PQ4H4) after addition of five electrons and four protons in the case of Au(III)(PQ4)(+). Under these solution conditions, the initial Au(PQ2)PF6 compound is shown to undergo a total of three Au(III)/Au(II) processes while Au(PQ3)PF6 and Au(PQ4)PF6 exhibit four and five metal-centered one-electron reductions, respectively, prior to the occurrence of additional reductions at the conjugated macrocycle and fused quinoxaline rings. Each redox reaction was monitored by cyclic voltammetry and thin-layer spectroelectrochemistry, and an overall mechanism for reduction in nonaqueous media with and without added acid is proposed. The effect of the number of Q groups on half-wave potentials for reduction and UV-visible spectra of the electroreduced species are analyzed using linear free energy relationships.

A multiscale simulation technique for molecular electronics: design of a directed self-assembled molecular n-bit shift register memory device.

A general method useful in molecular electronics design is developed that integrates modelling on the nano-scale (using quantum-chemical software) and on the micro-scale (using finite-element methods). It is applied to the design of an n-bit shift register memory that could conceivably be built using accessible technologies. To achieve this, the entire complex structure of the device would be built to atomic precision using feedback-controlled lithography to provide atomic-level control of silicon devices, controlled wet-chemical synthesis of molecular insulating pillars above the silicon, and controlled wet-chemical self-assembly of modular molecular devices to these pillars that connect to external metal electrodes (leads). The shift register consists of n connected cells that read data from an input electrode, pass it sequentially between the cells under the control of two external clock electrodes, and deliver it finally to an output device. The proposed cells are trimeric oligoporphyrin units whose internal states are manipulated to provide functionality, covalently connected to other cells via dipeptide linkages. Signals from the clock electrodes are conveyed by oligoporphyrin molecular wires, and µ-oxo porphyrin insulating columns are used as the supporting pillars. The developed multiscale modelling technique is applied to determine the characteristics of this molecular device, with in particular utilization of the inverted region for molecular electron-transfer processes shown to facilitate latching and control using exceptionally low energy costs per logic operation compared to standard CMOS shift register technology.

Polymorphism in porphyrin monolayers: the relation between adsorption configuration and molecular conformation.

Self-assembled monolayers of meso-5,10,15,20-tetrakis(undecyl)porphyrin copper(II) on a graphite/1-octanoic acid interface have been studied by Scanning Tunnelling Microscopy. Four distinct polymorphs were observed, varying in their unit cell size. Arrays of unit cells of the various polymorphs seamlessly connect to each other via shared unit cell vectors. The monolayers are not commensurate, but coincident with the underlying graphite substrate. The seamless transition between the polymorphs is proposed to be the result of an adaptation of the molecular conformations in the polymorphs and at the boundaries, which is enabled by the conformational freedom of the alkyl tails of these molecules.

Synthesis and ultrafast excited-state dynamics of zinc and palladium triply fused diporphyrins.

We report the synthesis and ultrafast excited-state dynamics of two new meso-meso, ß-ß, ß-ß triply fused diporphyrins, Zn-3DP and Pd-3DP. Both compounds were found to have short excited-state lifetimes: Zn-3DP possessed an average S1 lifetime of 14 ps before nonradiative deactivation to the ground state, whereas Pd-3DP displayed a longer average S1 lifetime of 18 ps before crossing to the T1 state, which itself possessed a very short triplet lifetime of 1.7 ns. The excited-state dynamics of Zn-3DP, compared to similar zinc(II) diporphyrins reported in the literature, suggests that a conical intersection of the S1 and S0 potential energy surfaces plays a major role as a deactivation pathway of these molecules. Furthermore, the short triplet lifetime of Pd-3DP, compared to other diporphyrins that also exploit the intramolecular heavy atom effect, reveals that the position of the heavy atom within the diporphyrin framework influences the strength of spin-orbit coupling. The implications for employing triply fused diporphyrins as NIR-absorbing triplet sensitizers are discussed.

An efficient fluorescence sensor for superoxide with an acridinium ion-linked porphyrin triad.

Addition of potassium superoxide with 18-crown-6 ether (KO(2)(•-)-18-crown-6) to a toluene solution of an acridinium ion-linked porphyrin triad (Acr(+)-H(2)P-Acr(+)) resulted in a remarkable enhancement of the fluorescence intensity. Thus, Acr(+)-H(2)P-Acr(+) acts as an efficient fluorescence sensor for superoxide. Electron transfer from KO(2)(•-)-18-crown-6 to the Acr(+) moiety to produce the two-electron-reduced species (Acr(•)-H(2)P-Acr(•)) results in inhibition of the fluorescence quenching via photoinduced electron transfer, as revealed by laser flash photolysis measurements.

Spectroscopy of the free phenalenyl radical.

After benzene and naphthalene, the smallest polycyclic aromatic hydrocarbon bearing six-membered rings is the threefold-symmetric phenalenyl radical. Despite the fact that it is so fundamental, its electronic spectroscopy has not been rigorously scrutinized, in spite of growing interest in graphene fragments for molecular electronic applications. Here we used complementary laser spectroscopic techniques to probe the jet-cooled phenalenyl radical in vacuo. Its spectrum reveals the interplay between four electronic states that exhibit Jahn-Teller and pseudo-Jahn-Teller vibronic coupling. The coupling mechanism has been elucidated by the application of various ab initio quantum-chemical techniques.

Porphyrin-doped solgel-lined structured optical fibers for local and remote sensing.

We constructed a type of sensor by depositing a solgel layer within the interior holes of a silica-structured fiber and, subsequently, coating this with an acid-responsive porphyrin. Protonation of the porphyrin by an acidic gas (HCl in this case), is detected by a large change in the visible spectrum. Compared to previous work on a liquid-core sensor in a structured optical fiber, the signal-to-noise ratio of this gas sensor shows a reduced signal strength, but the detection rate is increased about fortyfold.

Controlled templating of porphyrins by a molecular command layer.

The copper porphyrin (5,10,15,20-tetraundecylporphyrinato)copper(II) can be templated in a well-defined arrangement using p-(hexadecyloxycarbonyl)phenylacetylene as a command layer on graphite. The bicomponent system was characterized at the submolecular level at a solid/liquid interface by scanning tunneling microscopy (STM). It is proposed that the layer of copper porphyrins is templated on top of the command layer in a hierarchical fashion, via a combination of intermolecular π-π stacking and van der Waals interactions. A very subtle effect, i.e., a superstructure in the alkyl chain region of the phenylacetylene monolayers, was identified as a decisive factor for the templating process.

Unusual multi-step sequential Au(III)/Au(II) processes of gold(III) quinoxalinoporphyrins in acidic non-aqueous media.

The electrochemistry of gold(III) mono- and bis-quinoxalinoporphyrins was examined in CH(2)Cl(2) or PhCN containing 0.1 M tetra-n-butylammonium perchlorate (TBAP) before and after the addition of trifluoroacetic acid to solution. The investigated porphyrins are represented as Au(PQ)PF(6) and Au(QPQ)PF(6), where P is the dianion of the 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrin and Q is a quinoxaline group fused to a ß,ß'-pyrrolic position of the porphyrin macrocycle; in Au(QPQ)PF(6) there is a linear arrangement where the quinoxalines are fused to pyrrolic positions that are opposite each other. The porphyrin without the fused quinoxaline groups, Au(P)PF(6), was also investigated under the same solution conditions. In the absence of acid, all three gold(III) porphyrins undergo a single reversible Au(III)/Au(II) process leading to the formation of a Au(II) porphyrin which can be further reduced at more negative potentials to give stepwise the Au(II) porphyrin π-anion radical and dianion, respectively. However, in the presence of acid, the initial Au(III)/Au(II) processes of Au(PQ)PF(6) and Au(QPQ)PF(6) are followed by an internal electron transfer and protonation to regenerate new Au(III) porphyrins assigned as Au(III)(PQH)(+) and Au(III)(QPQH)(+). Both protonated gold(III) quinoxalinoporphyrins then undergo a second Au(III)/Au(II) process at more negative potentials. The electrogenerated monoprotonated monoquinoxalinoporphyrin, Au(II)(PQH), is then further reduced to its π-anion radical and dianion forms, but this is not the case for the monoprotonated bis-quinoxalinoporphyrin, Au(II)(QPQH), which accepts a second proton and is rapidly converted to Au(III)(HQPQH)(+) before undergoing a third Au(III)/Au(II) process to produce Au(II)(HQPQH) as a final product. Thus, Au(P)PF(6) undergoes one metal-centered reduction while Au(PQ)PF(6) and Au(QPQ)PF(6) exhibit two and three Au(III)/Au(II) processes, respectively. These unusual multistep sequential Au(III)/Au(II) processes were monitored by thin-layer spectroelectrochemistry and a reduction/oxidation mechanism for Au(PQ)PF(6) and Au(QPQ)PF(6) in acidic media is proposed.

Entropically driven photochemical upconversion.

Conventional photochemical upconversion (UC) through homo-geneous triplet-triplet annihilation (TTA) is subject to several enthalpic losses that limit the UC margin. Here, we address one of these losses: the triplet energy transfer (TET) from the sensitizer to the emitter molecules. Usually, the triplet energy level of the emitter is set below that of the sensitizer. In our system, the triplet energy level of the emitter exceeds that of the sensitizer by ∼600 cm(-1). Choosing suitable concentrations for the sensitizer and emitter molecules, we can exploit entropy as a driving force for the migration of triplet excitation from the sensitizer to the emitter manifolds. Thereby we obtain a new record for the peak-to-peak TTA-UC energy margin of 0.94 eV. A modified Stern-Volmer analysis yields a TET rate constant of 2.0 × 10(7) M(-1) s(-1). Despite being relatively inefficient, the upconverted fluorescence is easily visible to the naked eye with irradiation intensities as low as 2 W cm(-2).

Measurement of fluorescence in a rhodamine-123 doped self-assembled "giant" mesostructured silica sphere using a smartphone as optical hardware.

The blue OLED emission from a mobile phone was characterised, revealing a sharp emission band centred at λ = 445 nm with a 3dB bandwidth Δλ ∼ 20 nm. It was used to excite Rhodamine 123 doped within a "giant" mesostructured silica sphere during fabrication through evaporative self-assembly of silica nanoparticles. Fluorescence was able to be detected using a standard optical microscope fitted with a green transmission pass filter and cooled CCD and with 1 ms exposure time demonstrating the potential of mobile platforms as the basis for portable diagnostics in the field.

Evaluation of optical fiber microcell reactor for use in remote acid sensing.

An optical fiber acid-sensor based on protonation of a porphyrin solution within a single-hole structured optical fiber is proposed and demonstrated. The liquid-core fiber acts as a microcell reactor, and changes in the spectral signature with acidification are detected. Challenges and limitations in the practical deployment of such sensors are evaluated. An effective chemical sensor is demonstrated, but issues such as diffusion limit its full utilization. Some solutions are discussed.

Electrochemistry and spectroelectrochemistry of beta,beta'-fused quinoxalinoporphyrins and related extended bis-porphyrins with Co(III), Co(II), and Co(I) central metal ions.

A series of cobalt(II) and cobalt(III) porphyrins with fused quinoxaline rings at one or more beta,beta'-pyrrolic units of the macrocycle were synthesized and characterized as to their electrochemical properties in nonaqueous media. Their UV-visible spectra were also measured before and during oxidation or reduction in a thin-layer cell. The investigated quinoxalinoporphyrins are represented as (PQ)Co, (QPQ)CoCl, (PQ(2))CoCl, Co(P)-TA-(P)Co, and Co(PQ)-(QP)Co, where PQ = the dianion of 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)-quinoxalino[2,3-b']porphyrin, QPQ = the dianion of the corresponding linear bisquinoxalino[2,3-b':12,13-b'']porphyrin, PQ(2) = the dianion of the corresponding corner bisquinoxalino[2,3-b':7,8-b'']porphyrin, and (P)-TA-(P) = the tetraanion of the bis-porphyrin with 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrins fused at opposite ends of tetraazaanthracene. (P)Co and (P)CoCl were also characterized where P = the dianion of 5,10,15,20-tetrakis(3,5-di-tert-butylphenyl)porphyrin. Each compound could be cycled between their Co(III), Co(II), and Co(I) forms under the application of a given oxidizing or reducing potential, although a one-electron reduction of the Co(II) quinoxalinoporphyrins led to a product with mixed Co(I) and porphyrin pi-anion radical character followed by generation of a pure Co(I) pi-anion radical species at more negative potentials. The effect of the position and number of quinoxaline groups on the redox potentials and mechanisms of each electron transfer were elucidated, and comparisons made to structurally similar compounds containing both redox active and redox inactive central metal ions. Surprisingly, the position and number of quinoxaline groups on the macrocycle has little or no effect on the redox potentials for the Co(II) --> Co(III) or Co(III) --> Co(II) processes, but this is not the case for other electron transfer reactions where significant differences are seen between the examined compounds. Significant interactions are also observed between the two porphyrin macrocycles of the laterally bridged dicobalt(II) bis-porphyrin dyad Co(P)-TA-(P)Co in its singly and doubly reduced form, but only weak interactions are seen between the two Co(PQ) units of the single bond biquinolalinyl-bridged dicobalt(II) bis-porphyrin dyad Co(PQ)-(QP)Co.

On the efficiency limit of triplet-triplet annihilation for photochemical upconversion.

Photochemical upconversion is performed, whereby emitter triplet states are produced through triplet energy transfer from sensitizer molecules excited with low energy photons. The triplet emitter molecules undergo triplet-triplet annihilation to yield excited singlet states which emit upconverted fluorescence. Experiments comparing the 560 nm prompt fluorescence when rubrene emitter molecules are excited directly, using 525 nm laser pulses, to the delayed, upconverted fluorescence when the porphyrin sensitizer molecules are excited with 670 nm laser pulses reveal annihilation efficiencies to produce excited singlet emitters in excess of 20%. Conservative measurements reveal a 25% annihilation efficiency, while a direct comparison between the prompt and delayed fluorescence yield suggests a value as high as 33%. Due to fluorescence quenching, the photon upconversion efficiencies are lower, at 16%.