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1.
Cell ; 187(14): 3563-3584.e26, 2024 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-38889727

RESUMO

How evolution at the cellular level potentiates macroevolutionary change is central to understanding biological diversification. The >66,000 rove beetle species (Staphylinidae) form the largest metazoan family. Combining genomic and cell type transcriptomic insights spanning the largest clade, Aleocharinae, we retrace evolution of two cell types comprising a defensive gland-a putative catalyst behind staphylinid megadiversity. We identify molecular evolutionary steps leading to benzoquinone production by one cell type via a mechanism convergent with plant toxin release systems, and synthesis by the second cell type of a solvent that weaponizes the total secretion. This cooperative system has been conserved since the Early Cretaceous as Aleocharinae radiated into tens of thousands of lineages. Reprogramming each cell type yielded biochemical novelties enabling ecological specialization-most dramatically in symbionts that infiltrate social insect colonies via host-manipulating secretions. Our findings uncover cell type evolutionary processes underlying the origin and evolvability of a beetle chemical innovation.


Assuntos
Besouros , Animais , Besouros/genética , Besouros/metabolismo , Evolução Molecular , Benzoquinonas/metabolismo , Filogenia , Genômica , Simbiose/genética , Transcriptoma , Genoma de Inseto
2.
Phys Chem Chem Phys ; 26(16): 12510-12519, 2024 Apr 24.
Artigo em Inglês | MEDLINE | ID: mdl-38619071

RESUMO

The addition of sp-carbon-containing molecules to polycyclic sp3 tetrahedrane (c-C4H4) results in the formation of both o-benzyne (c-C6H4) and benzene (c-C6H6). Since both c-C6H4 and c-C6H6 have been detected in the interstellar medium (ISM), providing additional pathways for their possible astrochemical formation mechanisms can lead to the discovery of other molecules, such as c-C4H4, benzvalyne, and vinylidene (:CCH2). Addition of diatomic carbon (C2), the ethynyl radical (C2H), vinylidene, and acetylene (HCCH) to c-C4H4 is undertaken in individual pathways through high-level quantum chemical computations at the CCSD(T)-F12b/cc-pVTZ-F12 level of theory. The resulting C2 addition pathway proceeds barrierlessly through benzvalyne as an intermediate and reaches a true minimum at c-C6H4, but no leaving groups are produced which is required to dissipate excess energy within an interstellar chemical scheme. Similarly, the C2H addition to c-C4H4 produces benzvalyne as well as its related isomers. This pathway allows for the loss of a hydrogen leaving group to dissipate the resulting energy. Lastly, the HCCH and :CCH2 addition pathways follow through both benzvalene and benzvalyne in order to reach c-C6H6 (benzene) and c-C6H4 (o-benzyne) as well as H2 as the required leaving group. Although there is a barrier to the HCCH addition, the :CCH2 addition presents the contrary with only submerged barriers. These proposed mechanisms provide alternative possibilities for the formation of complex organic molecules in space.

3.
Phys Chem Chem Phys ; 24(23): 14573-14578, 2022 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-35666233

RESUMO

The isomerization of the highly strained benzvalyne structure to o-benzyne has been investigated using MCSCF and CCSD(T) levels of theory. Two reaction channels were modeled: the disrotatory one which leads directly to the benzyne product, and the conrotatory one which leads to an intermediate which can subsequently lead to the benzyne product. Energies at the MRMP2 level give 22.9 kcal mol-1 for the disrotatory channel and 21.7 and 1.4 kcal mol-1 for the two steps in the conrotatory one. However, the CCSD(T) energies give 19.3 and 14.2 kcal mol-1 for the two conrotatory steps. The first step of the conrotatory channel is significantly higher than the second so is rate determining for this channel. Comparison of the two separate channels shows that the conrotatory has just a slight energetic edge of 1.2 kcal mol-1 at the MRMP2 level. We did not compute the disrotatory channel at the CCSD(T) level due to the significant biradical nature of the wavefunction with natural orbital occupation numbers of 1.2 and 0.8 in the active space.

4.
J Chem Phys ; 156(2): 024302, 2022 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-35032974

RESUMO

Benzvalyne (C6H4) is a bicyclic structural isomer of o-benzyne that some typically trusted levels of theory do not report as a minimum on the potential energy surface (PES). The structure was found to be a C2v minimum at the MCSCF, MP2, coupled-cluster single double, coupled-cluster single double triple (CCSDT)-1b, and CCSDT-2 levels of theory. Density functionals at the B3LYP-D3, B2PLYP-D3, and M06-D3 levels also produced a minimum structure. On the other hand, the CCSD(T), CCSD(T)-F12, and CCSDT-1a methods produced a single imaginary frequency for benzvalyne. However, the increase in the correlation for the CCSDT-1b and CCSDT-2 methods implies that benzvalyne is, in fact, a true, if highly strained, minimum on the PES. The C-C≡C bond angle was found to be only 108°; this angle is 180° for an unstrained C-C≡C triple bond moiety. As a result, the strain energy is notably high at 159 kcal mol-1. Comparing the strain energy of the rest of the molecule gives a strain energy of 92 kcal mol-1 for this triple bond region alone. The computed harmonic frequencies contain normal modes consisting of two hindered rotations of the C≡C diatomic part of the molecule, suggesting that the dissociation of this diatomic from the bicylobutane moiety may be important in the chemistry of this molecule. Because the putative C2v minimum is predicted to have a significant dipole moment (2.6 D), benzvalyne may be detectable in TMC-1, where the related o-benzyne molecule has recently been observed by radio astronomy.

5.
J Exp Biol ; 224(10)2021 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-34027981

RESUMO

Genes known to affect circadian rhythms (i.e. 'clock genes') also influence the photoperiodic induction of overwintering reproductive diapause in the northern house mosquito, Culex pipiens f. pipiens. This suggests that molecular changes in one or more clock genes could contribute to the inability to diapause in a second form of this mosquito, Culex pipiens f. molestus. Temperate populations of Cx. pipiens f. molestus inhabit underground locations generally devoid of predictable photoperiods. For this reason, there could be limited fitness consequences if the hypothesized molecular changes to its clock genes also eliminated this mosquito's ability to regulate circadian rhythms in response to photoperiod variation. Here, we demonstrate that in contrast to this prediction, underground derived Cx. pipiens f. molestus retain exogenously influenceable circadian rhythms. Nonetheless, our genetic analyses indicate that the gene Helicase domino (dom) has a nine-nucleotide, in-frame deletion specific to Cx. pipiens f. molestus. Previous work has shown that splice variants in this gene differentially influence circadian behavior in Drosophila melanogaster. We also find derived, non-synonymous single nucleotide polymorphisms (SNPs) in eight genes that may also affect circadian rhythms and/or diapause induction in Cx. pipiens f. molestus. Finally, four putative circadian genes were found to have no quantifiable expression during any examined life stage, suggesting potential regulatory effects. Collectively, our findings indicate that the distinct, but molecularly interconnected life-history traits of diapause induction and circadian rhythms are decoupled in Cx. pipiens f. molestus and suggest this taxon may be a valuable tool for exploring exogenously influenced phenotypes in mosquitoes more broadly.


Assuntos
Culex , Culicidae , Proteínas de Drosophila , Adaptação Fisiológica , Animais , Ritmo Circadiano/genética , Culex/genética , Drosophila melanogaster , Fatores de Transcrição
6.
Phys Chem Chem Phys ; 20(41): 26608-26620, 2018 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-30310906

RESUMO

The isomerizations of 3,4-diazatricyclo[4.1.0.02,7]hept-3-ene and 3,4-diazatricyclo[4.1.0.02,7]heptane to their corresponding products were studied by ab initio calculations. Structures were determined at the multiconfiguration self-consistent field level and energies calculated at the single state second-order MRMP level. The isomerization of 3,4-diazatricyclo[4.1.0.02,7]hept-3-ene occurs through four unique pathways with barriers of 36.1 and 37.9 kcal mol-1 for the allowed channels, while those for the forbidden channels were 44.3 and 56.5 kcal mol-1. The 12.2 kcal mol-1 disparity in the disrotatory barriers is explained through electron delocalization in the transition state. The 3,4-diazatricyclo[4.1.0.02,7]heptane structure has eight separate reaction channels for isomerization, and the allowed barriers ranged from 37.4-43.3 kcal mol-1 while the forbidden barriers ranged from 49.5-57.3 kcal mol-1. Resonance stabilization for two of the forbidden pathways results in a relative energy lowering. The energy difference in the four allowed barriers is due mainly to steric considerations. The isomerization of 3,4,5-triazatricyclo[4.1.0.02,7]hept-3-ene through the disrotatory channel was studied to help identify stabilization effects from π bond electrons and lone pair electrons: π bond electrons showed greater contribution for molecular stabilization than lone pair electrons.

7.
J Phys Chem A ; 121(46): 8899-8911, 2017 Nov 22.
Artigo em Inglês | MEDLINE | ID: mdl-29088545

RESUMO

The isomerizations of 3-aza-3-ium-dihydrobenzvalene, 3,4-diaza-3-ium-dihydrobenzvalene, and 3,4-diaza-diium-dihydrobenzvalene to their respective cyclic-diene products were studied using electronic structure methods with a multiconfigurational wave function and several single reference methods. Transition states for both the allowed (conrotatory) and forbidden (disrotatory) pathways were located. The conrotatory pathways of each structure all proceed through a cyclic intermediate with a trans double bond in the ring: this trans double bond destroys the aromatic stabilization of the π electrons due to poor orbital overlap between the cis and trans π bonds. The 3,4-diaza-3-ium-dihydrobenzvalene structure has C1 symmetry, and there are four separate allowed and forbidden pathways for this structure. The 3-aza-3-ium-dihydrobenzvalene structure is Cs symmetric, and there are two separate allowed and forbidden pathways for this structure. For 3,4-diaza-3,4-diium-dihydrobenzvalene, there was a single allowed and single forbidden pathway due to the C2v symmetry. The separation of the barrier heights for all three molecules was studied, and we found the difference in activation barriers for the lowest allowed and lowest forbidden pathways in 3,4-diaza-3-ium-dihydrobenzvalene, 3-aza-3-ium-dihydrobenzvalene, and 3,4-diaza-diium-dihydrobenzvalene to be 9.1, 7.4, and 3.7 kcal/mol, respectively. The allowed and forbidden barriers of 3,4-diaza-diium-dihydrobenzvalene were separated by 3.7 kcal/mol, which is considerably less than the 12-15 kcal/mol expected based on the orbital symmetry rules. The addition of the secondary ammonium group tends to shift the conrotatory and disrotatory barriers up in energy (∼12-14 kcal/mol (conrotatory) and 5-10 kcal/mol (disrotatory) per secondary NH2 group) relative to the barriers of dihydrobenzvalene, but there is negligible effect on E,Z to Z,Z isomerization barriers, which remain in the expected range of greater than 4 kcal/mol.

8.
Am J Physiol Endocrinol Metab ; 306(1): E91-9, 2014 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-24192287

RESUMO

Many low-birth-weight infants experience failure to thrive. The amino acid leucine stimulates protein synthesis in skeletal muscle of the neonate, but less is known about the effects of the leucine metabolite ß-hydroxy-ß-methylbutyrate (HMB). To determine the effects of HMB on protein synthesis and the regulation of translation initiation and degradation pathways, overnight-fasted neonatal pigs were infused with HMB at 0, 20, 100, or 400 µmol·kg body wt(-1)·h(-1) for 1 h (HMB 0, HMB 20, HMB 100, or HMB 400). Plasma HMB concentrations increased with infusion and were 10, 98, 316, and 1,400 nmol/ml in the HMB 0, HMB 20, HMB 100, and HMB 400 pigs. Protein synthesis rates in the longissimus dorsi (LD), gastrocnemius, soleus, and diaphragm muscles, lung, and spleen were greater in HMB 20 than in HMB 0, and in the LD were greater in HMB 100 than in HMB 0. HMB 400 had no effect on protein synthesis. Eukaryotic initiation factor (eIF)4E·eIF4G complex formation and ribosomal protein S6 kinase-1 and 4E-binding protein-1 phosphorylation increased in LD, gastrocnemius, and soleus muscles with HMB 20 and HMB 100 and in diaphragm with HMB 20. Phosphorylation of eIF2α and elongation factor 2 and expression of system A transporter (SNAT2), system L transporter (LAT1), muscle RING finger 1 protein (MuRF1), muscle atrophy F-box (atrogin-1), and microtubule-associated protein light chain 3 (LC3-II) were unchanged. Results suggest that supplemental HMB enhances protein synthesis in skeletal muscle of neonates by stimulating translation initiation.


Assuntos
Animais Recém-Nascidos/metabolismo , Proteínas Musculares/biossíntese , Músculo Esquelético/metabolismo , Biossíntese de Proteínas/efeitos dos fármacos , Sus scrofa/metabolismo , Valeratos/administração & dosagem , Animais , Autofagia/efeitos dos fármacos , Leucina/metabolismo , Músculo Esquelético/química , Fatores de Iniciação de Peptídeos/análise , Fatores de Iniciação de Peptídeos/metabolismo , Fosforilação/efeitos dos fármacos , Transdução de Sinais , Serina-Treonina Quinases TOR/metabolismo , Valeratos/sangue
9.
J Nutr ; 144(5): 586-91, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24572036

RESUMO

Stimulation of gastrointestinal tract maturation is 1 of the many benefits of human milk. Human milk oligosaccharides (HMOs) are abundant in human milk and are reported to promote enterocyte differentiation in vitro. The objective of this study was to assess the impact of 3 predominant HMOs on multiple aspects of enterocyte maturation in vitro. Ranging from crypt-like to differentiated enterocytes, we used the well-characterized intestinal cell lines HT-29 and Caco-2Bbe to model early and late stages of differentiation, respectively. With this model of the crypt-villus axis made up of preconfluent HT-29, preconfluent Caco-2Bbe, and postconfluent Caco-2Bbe cultures, we characterized the impact of lacto-N-neotetraose (LNnT), 2'-fucosyllactose (2'FL), and 6'-sialyllactose on epithelial cell kinetics and function. All 3 HMOs dose-dependently inhibited cell proliferation in undifferentiated HT-29 and Caco-2Bbe cultures (P < 0.05). In contrast to previous reports, only treatment with 2'FL at concentrations similar to human milk increased alkaline phosphatase activity by 31% (P = 0.044) in HT-29 cultures and increased sucrase activity by 54% (P = 0.005) in well-differentiated Caco-2Bbe cultures. LNnT at concentrations similar to that reported for human milk increased transepithelial resistance by 21% (P = 0.002) in well-differentiated Caco-2Bbe cells. In summary, all 3 HMOs reduced cell proliferation in an epithelial cell model of the crypt-villus axis. However, effects on differentiation, digestive function, and epithelial barrier function differed between the HMOs tested. These results suggest differential roles for specific HMOs in maturation of the gastrointestinal tract.


Assuntos
Diferenciação Celular/efeitos dos fármacos , Enterócitos/citologia , Enterócitos/efeitos dos fármacos , Leite Humano/química , Oligossacarídeos/farmacologia , Apoptose/efeitos dos fármacos , Células CACO-2 , Proliferação de Células/efeitos dos fármacos , Relação Dose-Resposta a Droga , Células Epiteliais/citologia , Células Epiteliais/efeitos dos fármacos , Trato Gastrointestinal/citologia , Trato Gastrointestinal/crescimento & desenvolvimento , Células HT29 , Humanos , Mucosa Intestinal/citologia , Mucosa Intestinal/crescimento & desenvolvimento , Lactose/análogos & derivados , Lactose/farmacologia , Trissacarídeos/farmacologia
10.
Phys Chem Chem Phys ; 15(32): 13593-600, 2013 Aug 28.
Artigo em Inglês | MEDLINE | ID: mdl-23832287

RESUMO

The isomerizations of 3-aza-benzvalene to pyridine and 3,4-diaza-benzvalene to pyridazine have been studied using ab initio methods with a multiconfigurational wavefunction. Transition states for both the allowed disrotatory and forbidden conrotatory pathways were located. The forbidden pathways proceed through an intermediate consisting of pyridine or pyridazine with a trans double bond in the ring: this trans double bond destroys the aromatic stabilization of the π electrons due to poor orbital overlap between the cis and trans π bonds. Due to the Cs molecular point group, there are two separate allowed and forbidden pathways for 3-aza-benzvalene. The separation of the barrier heights was of particular interest: the difference in activation barriers for the lowest allowed and lowest forbidden pathways in 3-aza-benzvalene was only 1.3 kcal mol(-1), and the lowest forbidden pathway actually had a 1.5 kcal mol(-1) lower barrier than the highest allowed one. The 3-aza-benzvalene structure allows energy crossing of the allowed and forbidden barriers. For 3,4-diaza-benzvalene, there was only a single allowed and single forbidden pathway, due to the C2v point group, and they were separated by 8.4 kcal mol(-1), more in line with the orbital symmetry rules.


Assuntos
Compostos Aza/química , Piridazinas/química , Piridinas/química , Teoria Quântica , Estereoisomerismo
11.
Environ Entomol ; 52(4): 618-626, 2023 08 18.
Artigo em Inglês | MEDLINE | ID: mdl-37417547

RESUMO

Nitrogen (N) is a key nutrient required by all living organisms for growth and development, but is a limiting resource for many organisms. Organisms that feed on material with low N content, such as wood, might be particularly prone to N limitation. In this study, we investigated the degree to which the xylophagous larvae of the stag beetle Ceruchus piceus (Weber) use associations with N-fixing bacteria to acquire N. We paired acetylene reduction assays by cavity ring-down absorption spectroscopy (ARACAS) with 15N2 incubations to characterize rates of N fixation within C. piceus. Not only did we detect significant N fixation activity within C. piceus larvae, but we calculated a rate that was substantially higher than most previous reports for N fixation in insects. While taking these measurements, we discovered that N fixation within C. piceus can decline rapidly in a lab setting. Consequently, our results demonstrate that previous studies, which commonly keep insects in the lab for long periods of time prior to and during measurement, may have systematically under-reported rates of N fixation in insects. This suggests that within-insect N fixation may contribute more to insect nutrition and ecosystem-scale N budgets than previously thought.


Assuntos
Besouros , Animais , Ecossistema , Fixação de Nitrogênio , Nitrogênio , Insetos , Larva
12.
bioRxiv ; 2023 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-37398185

RESUMO

How evolution at the cellular level potentiates change at the macroevolutionary level is a major question in evolutionary biology. With >66,000 described species, rove beetles (Staphylinidae) comprise the largest metazoan family. Their exceptional radiation has been coupled to pervasive biosynthetic innovation whereby numerous lineages bear defensive glands with diverse chemistries. Here, we combine comparative genomic and single-cell transcriptomic data from across the largest rove beetle clade, Aleocharinae. We retrace the functional evolution of two novel secretory cell types that together comprise the tergal gland-a putative catalyst behind Aleocharinae's megadiversity. We identify key genomic contingencies that were critical to the assembly of each cell type and their organ-level partnership in manufacturing the beetle's defensive secretion. This process hinged on evolving a mechanism for regulated production of noxious benzoquinones that appears convergent with plant toxin release systems, and synthesis of an effective benzoquinone solvent that weaponized the total secretion. We show that this cooperative biosynthetic system arose at the Jurassic-Cretaceous boundary, and that following its establishment, both cell types underwent ∼150 million years of stasis, their chemistry and core molecular architecture maintained almost clade-wide as Aleocharinae radiated globally into tens of thousands of lineages. Despite this deep conservation, we show that the two cell types have acted as substrates for the emergence of adaptive, biochemical novelties-most dramatically in symbiotic lineages that have infiltrated social insect colonies and produce host behavior-manipulating secretions. Our findings uncover genomic and cell type evolutionary processes underlying the origin, functional conservation and evolvability of a chemical innovation in beetles.

13.
PLoS One ; 17(6): e0268112, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35648743

RESUMO

Oxygen is an important and often limiting reagent of a firefly's bioluminescent chemical reaction. Therefore, the development of the tracheal system and its subsequent modification to support the function of firefly light organs are key to understanding this process. We employ micro-CT scanning, 3D rendering, and confocal microscopy to assess the abdominal tracheal system in Photinus pyralis from the external spiracles to the light organ's internal tracheal brush, a feature named here for the first time. The abdominal spiracles in firefly larvae and pupae are of the biforous type, with a filter apparatus and appear to have an occlusor muscle to restrict airflow. The first abdominal spiracle in the adult firefly is enlarged and bears an occlusor muscle, and abdominal spiracles two through eight are small, with a small atrium and bilobed closing apparatus. Internal tracheal system features, including various branches, trunks, and viscerals, were homologized across life stages. In adults, the sexually dimorphic elaboration and increase in volume associated with tracheal features of luminous segments emphasizes the importance of gas exchange during the bioluminescent process.


Assuntos
Besouros , Vaga-Lumes , Animais , Larva , Pupa , Traqueia/diagnóstico por imagem
14.
Nutr Cancer ; 62(3): 362-70, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20358474

RESUMO

Colorectal cancer (CRC) is a leading cause of cancer-related deaths in the United States. Epidemiological data have suggested that coffee consumption is inversely related to CRC risk, which may be attributed to chlorogenic acid (CGA), an ester of caffeic acid (CA) and quinic acid. This study was conducted to determine whether chronic dietary CGA supplementation would attenuate tumorigenesis and oxidative stress in a mouse model of azoxymethane (AOM)-induced colon cancer. Mice (4-wk old; n = 15/group) were fed CGA (0%, 0.01%, or 0.1%) for 20 wk and received 6 weekly intraperitoneal AOM injections (10 mg/kg). CGA and CA dose-dependently accumulated in the small intestinal mucosa. AOM induced (P < 0.05) colonic aberrant crypt foci (14.2 +/- 1.9/field) and tumors (14.6 +/- 1.1/colon), which were correlated (r = .677; P < 0.05), and CGA at either dose did not reduce tumorigenesis. Hepatic GSH/GSSG and Cys/CySS ratios were unaffected by AOM, but CGA at 0.1% increased these ratios by decreasing GSSG and CySS. CGA did not affect the ratios of small intestinal GSH/GSSG or Cys/CySS, which were decreased in response to AOM treatment. Collectively, these data indicated that CGA did not protect against AOM-induced tumorigenesis but affected hepatic thiol redox status in this colon cancer model.


Assuntos
Ácido Clorogênico/farmacologia , Neoplasias do Colo/prevenção & controle , Intestino Delgado/metabolismo , Fígado/metabolismo , Lesões Pré-Cancerosas/prevenção & controle , Compostos de Sulfidrila/metabolismo , Animais , Azoximetano , Peso Corporal , Neoplasias do Colo/induzido quimicamente , Neoplasias do Colo/patologia , Ingestão de Alimentos , Glutationa/metabolismo , Camundongos , Oxirredução , Lesões Pré-Cancerosas/induzido quimicamente , Lesões Pré-Cancerosas/patologia
15.
J Phys Chem A ; 114(43): 11798-806, 2010 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-20883007

RESUMO

The thermal isomerization of tricyclo[4.1.0.0(2,7)]heptene has been studied using computational chemistry with structures determined at the MCSCF level and energies at the MRMP2 level. Both the allowed conrotatory and forbidden disrotatory pathways have been elucidated resulting in cycloheptatriene isomers. Four reaction channels are available for the conrotatory pathway depending on which bond breaks first in the bicyclobutane moiety leading to enantiomeric pairs of (E,Z,Z)-1,3,5-cycloheptatriene and (Z,E,Z)-1,3,5-cycloheptatriene intermediates. The activation barrier is calculated to be 31.3 kcal·mol⁻¹ for two channels and 37.5 kcal·mol⁻¹ for the other two. The lower activation barrier leading to the (E,Z,Z)-1,3,5-cycloheptatriene enantiomeric pair is proposed to be due to resonance within the transition state. The same behavior was observed for the disrotatory pathway with activation barriers of 42.0 kcal·mol⁻¹ and 55.1 kcal·mol⁻¹ for the two channels, again with one transition state resonance stabilized. The barriers for trans double bond rotation of the intermediate cycloheptatrienes are determined to be 17.1 and 17.4 kcal·mol⁻¹, about 5 kcal·mol⁻¹ more than that for the seven carbon diene (E,Z)-1,3-cycloheptadiene. The electrocyclic ring closure of the trans cycloheptatrienes have been modeled and barriers determined to be 11.1 and 11.9 kcal·mol⁻¹ for the formation of bicyclo[3.2.0]hepta-2,6-diene. This structure was previously reported as the end product for thermolysis of the parent tricyclo[4.1.0.0(2,7)]heptene. The thermodynamically more stable cycloheptatriene can be formed from bicyclo[3.2.0]hepta-2,6-diene through a two step process with a calculated pseudo first-order barrier of 36.4 kcal·mol⁻¹. The trans-cycloheptatrienes reported herein are the first characterization of a small seven-membered ring triene with a trans double bond.


Assuntos
Compostos Policíclicos/química , Teoria Quântica , Estrutura Molecular , Estereoisomerismo
16.
PLoS One ; 15(6): e0234272, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32502196

RESUMO

Insects have long been thought to largely not require hemoglobins, with some notable exceptions like the red hemolymph of chironomid larvae. The tubular, branching network of tracheae in hexapods is traditionally considered sufficient for their respiration. Where hemoglobins do occur sporadically in plants and animals, they are believed to be either convergent, or because they are ancient in origin and their expression is lost in many clades. Our comprehensive analysis of 845 Hexapod transcriptomes, totaling over 38 Gbases, revealed the expression of hemoglobins in all 32 orders of hexapods, including the 29 recognized orders of insects. Discovery and identification of 1333 putative hemoglobins were achieved with target-gene BLAST searches of the NCBI TSA database, verifying functional residues, secondary- and tertiary-structure predictions, and localization predictions based on machine learning. While the majority of these hemoglobins are intracellular, extracellular ones were recovered in 38 species. Gene trees were constructed via multiple-sequence alignments and phylogenetic analyses. These indicate duplication events within insects and a monophyletic grouping of hemoglobins outside other globin clades, for which we propose the term insectahemoglobins. These hemoglobins are phylogenetically adjacent and appear structurally convergent with the clade of chordate myoglobins, cytoglobins, and hemoglobins. Their derivation and co-option from early neuroglobins may explain the widespread nature of hemoglobins in various kingdoms and phyla. These results will guide future work involving genome comparisons to transcriptome results, experimental investigations of gene expression, cell and tissue localization, and gas binding properties, all of which are needed to further illuminate the complex respiratory adaptations in insects.


Assuntos
Artrópodes/genética , Perfilação da Expressão Gênica , Hemoglobinas/genética , Sequência de Aminoácidos , Animais , Hemoglobinas/química , Homologia de Sequência do Ácido Nucleico
17.
Parasit Vectors ; 13(1): 8, 2020 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-31915057

RESUMO

BACKGROUND: Within the Culex pipiens mosquito complex, there are six contemporarily recognized taxa: Cx. quinquefasciatus, Cx. pipiens f. pipiens, Cx. pipiens f. molestus, Cx. pipiens pallens, Cx. australicus and Cx. globocoxitus. Many phylogenetic aspects within this complex have eluded resolution, such as the relationship of the two Australian endemic taxa to the other four members, as well as the evolutionary origins and taxonomic status of Cx. pipiens pallens and Cx. pipiens f. molestus. Ultimately, insights into lineage relationships within the complex will facilitate a better understanding of differential disease transmission by these mosquitoes. To this end, we have combined publicly available data with our own sequencing efforts to examine these questions. RESULTS: We found that the two Australian endemic complex members, Cx. australicus and Cx. globocoxitus, comprise a monophyletic group, are genetically distinct, and are most closely related to the cosmopolitan Cx. quinquefasciatus. Our results also show that Cx. pipiens pallens is genetically distinct, but may have arisen from past hybridization. Lastly, we observed complicated patterns of genetic differentiation within and between Cx. pipiens f. pipiens and Cx. pipiens f. molestus. CONCLUSIONS: Two Australian endemic Culex taxa, Cx. australicus and Cx. globocoxitus, belong within the Cx. pipiens complex, but have a relatively older evolutionary origin. They likely diverged from Cx. quinquefasciatus after its colonization of Australia. The taxon Cx. pipiens pallens is a distinct evolutionary entity that likely arose from past hybridization between Cx. quinquefasciatus and Cx. pipiens f. pipiens/Cx. pipiens f. molestus. Our results do not suggest it derives from ongoing hybridization. Finally, genetic differentiation within the Cx. pipiens f. pipiens and Cx. pipiens f. molestus samples suggests that they collectively form two separate geographic clades, one in North America and one in Europe and the Mediterranean. This may indicate that the Cx. pipiens f. molestus form has two distinct origins, arising from Cx. pipiens f. pipiens in each region. However, ongoing genetic exchange within and between these taxa have obscured their evolutionary histories, and could also explain the absence of monophyly among our samples. Overall, this work suggests many avenues that warrant further investigation.


Assuntos
Culex/classificação , Mosquitos Vetores/classificação , Animais , Austrália , Culex/genética , Europa (Continente) , Variação Genética , Hibridização Genética , Mosquitos Vetores/genética , América do Norte , Filogenia
18.
Biomarkers ; 14(1): 26-37, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19283521

RESUMO

The serum amyloid A protein is one of the major reactants in the acute-phase response. Using representational difference analysis comparing RNA from normal and involuting quarters of a dairy cow mammary gland, we found an mRNA encoding the SAA3 protein (M-SAA3). The M-SAA3 mRNA was localized to restricted populations of bovine mammary epithelial cells (MECs). It was expressed at a moderate level in late pregnancy, at a low level through lactation, was induced early in milk stasis, and expressed at high levels in most MECs during mid to late involution and inflammation/mastitis. The mature M-SAA3 peptide was expressed in Escherichia coli, antibodies made, and shown to have antibacterial activity against E. coli, Streptococcus uberis and Pseudomonas aeruginosa. These results suggest that the mammary SAA3 may have a role in protection of the mammary gland during remodelling and infection and possibly in the neonate gastrointestinal tract.


Assuntos
Glândulas Mamárias Animais/metabolismo , Proteína Amiloide A Sérica/metabolismo , Animais , Sequência de Bases , Northern Blotting , Western Blotting , Bovinos , Primers do DNA , Ensaio de Imunoadsorção Enzimática , Reação em Cadeia da Polimerase , RNA Mensageiro/genética , Proteína Amiloide A Sérica/genética , Proteína Amiloide A Sérica/imunologia
19.
J Phys Chem A ; 113(30): 8724-30, 2009 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-19719317

RESUMO

The stability of cis,trans-dihydropyridines and cis,trans-pyrans has been studied using ab initio methods. The strain introduced by the trans double bond has been determined relative to the cis,cis-isomers and introduces 58-69 kcal x mol(-1) of strain energy, at the G3 level of theory, depending on the particular isomer. Double bond rotation barriers have been calculated at the MRMP2/MCSCF level and range from 2.2 kcal x mol(-1) to 11.0 kcal x mol(-1), significantly lower than butadiene (50.3 kcal x mol(-1)). Evidence of resonance through delocalization of the pi electrons is present for the conjugated double bond isomers which lowers the activation barriers. The transition states for trans double bond rotation have significant biradical character but markedly less than that for butadiene. The early transition states with H-C=C-H dihedral angles of 130-150 degrees, as opposed to 90 degrees for butadiene, are consistent with the reduction in the natural orbital occupation numbers. We could not locate a minimum for a structure having both double bonds in the trans configuration and so report that one trans bond is the most the rings can accommodate.


Assuntos
Di-Hidropiridinas/química , Piranos/química , Termodinâmica , Simulação por Computador , Isomerismo , Modelos Químicos , Teoria Quântica
20.
Zootaxa ; 4543(3): 341-374, 2019 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-30647293

RESUMO

Etheophanus Broun is considered a molytine based on the form of the pharyngeal plate, presence of a small spiculum relictum in the male, and presence of a pair of small internal apodemes on the antero-lateral corners of the 5th abdominal ventrite of the female. Examination of primary type specimens and newer material confirm one new species Etheophanus kuscheli sp. n. and two synonomies (Etheophanus nitidellus Broun, 1923 [= Etheophanus obscurus Broun, 1923] and Etheophanus striatus Broun, 1910 [=Etheophanus punctiventris Broun, 1914]). Generic and species diagnoses, a key to the species, and lectotype designations for three species are included. Phylogenetic reconstructions based on a combined analysis of the nuclear 28S rRNA and mitochondrial cytochrome c oxidase subunit I genes confirmed the status of E. kuscheli and a species complex, the E. nitidellus/E. optandus clade distributed in the southern portion of the South Island. The relationship E. pinguis [northern North Island] (E. striatus [southern North Island, northern South Island] (E. kuscheli [northwestern South Island] (E. nitidellus, E. optandus [southwestern North Island]) corresponds to geographic patterns found in other beetle lineages. Etheophanus striatus is composed of three lineages, one widespread in the north and south islands and two allopatric populations in the northwest South Island. The E. nitidellus/E. optandus complex includes four distinct lineages, one restricted to Fiordland, the other three sympatric in the region affected by the Haast Corridor.


Assuntos
Filogenia , Gorgulhos , Animais , Besouros , Feminino , Masculino , Nova Zelândia
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