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1.
Mol Cell ; 81(13): 2778-2792.e4, 2021 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-33932350

RESUMO

DNA polymerase ε (Polε) carries out high-fidelity leading strand synthesis owing to its exonuclease activity. Polε polymerase and exonuclease activities are balanced, because of partitioning of nascent DNA strands between catalytic sites, so that net resection occurs when synthesis is impaired. In vivo, DNA synthesis stalling activates replication checkpoint kinases, which act to preserve the functional integrity of replication forks. We show that stalled Polε drives nascent strand resection causing fork functional collapse, averted via checkpoint-dependent phosphorylation. Polε catalytic subunit Pol2 is phosphorylated on serine 430, influencing partitioning between polymerase and exonuclease active sites. A phosphormimetic S430D change reduces exonucleolysis in vitro and counteracts fork collapse. Conversely, non-phosphorylatable pol2-S430A expression causes resection-driven stressed fork defects. Our findings reveal that checkpoint kinases switch Polε to an exonuclease-safe mode preventing nascent strand resection and stabilizing stalled replication forks. Elective partitioning suppression has implications for the diverse Polε roles in genome integrity maintenance.


Assuntos
DNA Polimerase II/química , Exonucleases/química , Proteínas de Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/enzimologia , Substituição de Aminoácidos , Domínio Catalítico , DNA Polimerase II/genética , DNA Polimerase II/metabolismo , DNA Fúngico/biossíntese , DNA Fúngico/química , DNA Fúngico/genética , Exonucleases/genética , Exonucleases/metabolismo , Mutação de Sentido Incorreto , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo
2.
Cell ; 141(6): 982-93, 2010 Jun 11.
Artigo em Inglês | MEDLINE | ID: mdl-20550934

RESUMO

Defects in mitochondrial gene expression are associated with aging and disease. Mterf proteins have been implicated in modulating transcription, replication and protein synthesis. We have solved the structure of a member of this family, the human mitochondrial transcriptional terminator MTERF1, bound to dsDNA containing the termination sequence. The structure indicates that upon sequence recognition MTERF1 unwinds the DNA molecule, promoting eversion of three nucleotides. Base flipping is critical for stable binding and transcriptional termination. Additional structural and biochemical results provide insight into the DNA binding mechanism and explain how MTERF1 recognizes its target sequence. Finally, we have demonstrated that the mitochondrial pathogenic G3249A and G3244A mutations interfere with key interactions for sequence recognition, eliminating termination. Our results provide insight into the role of mterf proteins and suggest a link between mitochondrial disease and the regulation of mitochondrial transcription.


Assuntos
Fatores de Transcrição de Zíper de Leucina Básica/metabolismo , DNA Mitocondrial/metabolismo , Regiões Terminadoras Genéticas , Transcrição Gênica , Sequência de Aminoácidos , Fatores de Transcrição de Zíper de Leucina Básica/química , Fatores de Transcrição de Zíper de Leucina Básica/genética , DNA Mitocondrial/química , Humanos , Mitocôndrias/genética , Mitocôndrias/metabolismo , Doenças Mitocondriais/metabolismo , Proteínas Mitocondriais , Modelos Moleculares , Nucleotídeos/metabolismo , Mutação Puntual , RNA de Transferência de Leucina/genética
3.
Nucleic Acids Res ; 50(1): 322-332, 2022 01 11.
Artigo em Inglês | MEDLINE | ID: mdl-34928349

RESUMO

Mitochondrial transcription factor A (TFAM) plays a critical role in mitochondrial transcription initiation and mitochondrial DNA (mtDNA) packaging. Both functions require DNA binding, but in one case TFAM must recognize a specific promoter sequence, while packaging requires coating of mtDNA by association with non sequence-specific regions. The mechanisms by which TFAM achieves both sequence-specific and non sequence-specific recognition have not yet been determined. Existing crystal structures of TFAM bound to DNA allowed us to identify two guanine-specific interactions that are established between TFAM and the bound DNA. These interactions are observed when TFAM is bound to both specific promoter sequences and non-sequence specific DNA. These interactions are established with two guanine bases separated by 10 random nucleotides (GN10G). Our biochemical results demonstrate that the GN10G consensus is essential for transcriptional initiation and contributes to facilitating TFAM binding to DNA substrates. Furthermore, we report a crystal structure of TFAM in complex with a non sequence-specific sequence containing a GN10G consensus. The structure reveals a unique arrangement in which TFAM bridges two DNA substrates while maintaining the GN10G interactions. We propose that the GN10G consensus is key to facilitate the interaction of TFAM with DNA.


Assuntos
Proteínas de Ligação a DNA/química , Proteínas Mitocondriais/química , Fatores de Transcrição/química , Sítios de Ligação , DNA/metabolismo , Proteínas de Ligação a DNA/metabolismo , Humanos , Proteínas Mitocondriais/metabolismo , Simulação de Dinâmica Molecular , Ligação Proteica , Fatores de Transcrição/metabolismo
4.
Clin Rehabil ; : 2692155241258299, 2024 Jun 10.
Artigo em Inglês | MEDLINE | ID: mdl-38856157

RESUMO

OBJECTIVE: Large numbers of people are subject to alterations and pathologies in the foot. To quantify how these problems of foot function affect the quality of life, clinicians and researchers have developed measures such as the Foot Function Index (FFI). Our aim is to determine the methodological quality of the FFI including adaptations to other languages. DATA SOURCES: The studies considered in this review were extracted from the PubMed, Embase and CINAHL databases. The inclusion criteria were followed: (1) studies of patients with no previous foot or ankle pathology and aged over 18 years; (2) based on English-language patient-reported outcome measures that assess foot function; (3) the patient-reported outcome measures should present measurement properties based on COnsensus-based Standards for the selection of health Measurement Instruments (COSMIN) criteria. REVIEW METHODS: The systematic review was conducted following the COSMIN criteria to establish the methodological quality of the original FFI, together with its variants and adaptations. The last search was carried out in May 2024. RESULTS: Of the 1994 studies obtained in the preliminary search, 20 were eligible for inclusion in the final analysis. These results are the validations and cross-cultural adaptations to the following languages: the original FFI has cross-cultural adaptation in 13 languages and the FFI-Revised Short Form has been adapted and validated for use in 2 languages. CONCLUSION: In terms of methodological quality, the FFI-Revised Short Form questionnaire is a valuable instrument for evaluating ankle and foot function and could usefully be expanded to be available in more languages.

5.
Dis Esophagus ; 2024 Jun 11.
Artigo em Inglês | MEDLINE | ID: mdl-38857460

RESUMO

High-resolution esophageal manometry [HRM] has become the gold standard for the evaluation of esophageal motility disorders. It is unclear whether there are HRM differences in diagnostic outcome based on regional or geographic distribution. The diagnostic outcome of HRM in a diverse geographical population of Mexico was compared and determined if there is variability in diagnostic results among referral centers. Consecutive patients referred for HRM during 2016-2020 were included. Four major referral centers in Mexico participated in the study: northeastern, southeastern, and central (Mexico City, two centers). All studies were interpreted by experienced investigators using Chicago Classification 3 and the same technology. A total of 2293 consecutive patients were included. More abnormal studies were found in the center (61.3%) versus south (45.8%) or north (45.2%) P < 0.001. Higher prevalence of achalasia was noted in the south (21.5%) versus center (12.4%) versus north (9.5%) P < 0.001. Hypercontractile disorders were more common in the north (11.0%) versus the south (5.2%) or the center (3.6%) P.001. A higher frequency of weak peristalsis occurred in the center (76.8%) versus the north (74.2%) or the south (69.2%) P < 0.033. Gastroesophageal junction obstruction was diagnosed in (7.2%) in the center versus the (5.3%) in the north and (4.2%) in the south p.141 (ns). This is the first study to address the diagnostic outcome of HRM in diverse geographical regions of Mexico. We identified several significant diagnostic differences across geographical centers. Our study provides the basis for further analysis of the causes contributing to these differences.

6.
J Shoulder Elbow Surg ; 33(2): 389-398, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37689101

RESUMO

BACKGROUND: Failure to achieve fixation of the glenoid baseplate will lead to clinical failure. The fixation of the baseplate to the scapula must be able to withstand sufficient shear forces to allow bony ingrowth. The importance of compression to neutralize the forces at the baseplate-bone interface has been assumed to be critical in limiting excessive micromotion. The purpose of this study is to determine the effect of compression on implant stability with different baseplate designs. METHODS: Various baseplate designs (1-piece monolithic central screw [1P], 2-piece locking central screw [2PL], and 2-piece nonlocking center screw [2PNL]) were investigated at 3 different compressive forces (high [810 N], medium [640 N], and low [530 N]). Synthetic bone cylinders were instrumented, and peripheral screws were used in all models. The combination of 1 locking and 3 nonlocking peripheral screw fixation was selected as worst-case scenario. Dynamic testing protocol followed the ASTM F2028-17 standard. The baseplate micromotion at high compression was compared to low compression. Additionally, the baseplate micromotion for each design was compared at baseline (first 50 cycles) and at 10,000 cycles for the 3 different compressive forces where motion above 150 µm was defined as failure. RESULTS: Baseplate micromotion was found to negatively correlate with compression (rpb = -0.83, P < .0001). At baseline, all baseplate designs were considered stable, regardless of compression. With high compression, average micromotion at the glenoid baseplate-bone interface remained below the 150-µm threshold for all baseplate designs at 10,000 cycles (1P: 50 ± 10 µm; 2PL: 78 ± 32 µm; 2PNL: 79 ± 8 µm; P = .060). With medium compression, average micromotion at 10,000 cycles for all 3 designs remained below the 150-µm threshold (1P: 88 ± 22 µm; 2PL: 132 ± 26 µm; 2PNL: 107 ± 39 µm). The 2PL design had the highest amount of micromotion (P = .013). With low compression, both 2-piece designs had an average micromotion above the 150-µm threshold whereas the 1-piece design did not (1P: 133 ± 35 µm; 2PL: 183 ± 21 µm; 2PNL: 166 ± 39 µm). The 2PL design had significantly higher micromotion when compared to 1P design (P = .041). DISCUSSION: The stability of a central screw baseplate correlates with the amount of compression obtained and is affected by implant design. For the same amount of compression, more micromotion is observed in a 2-piece design than a 1-piece design.


Assuntos
Artroplastia do Ombro , Articulação do Ombro , Humanos , Articulação do Ombro/cirurgia , Artroplastia , Escápula/cirurgia , Movimento (Física) , Fenômenos Biomecânicos
7.
Blood ; 137(23): 3291-3305, 2021 06 10.
Artigo em Inglês | MEDLINE | ID: mdl-33657221

RESUMO

Prior studies suggest increased cytomegalovirus (CMV) infection after haploidentical donor transplantation with posttransplant cyclophosphamide (HaploCy). The role of allograft source and posttransplant cyclophosphamide (PTCy) in CMV infection is unclear. We analyzed the effect of graft source and PTCy on incidence of CMV infection, and effects of serostatus and CMV infection on transplant outcomes. We examined patients reported to the Center for International Blood and Marrow Transplantation Research between 2012 and 2017 who had received HaploCy (n = 757), matched related (Sib) with PTCy (SibCy, n = 403), or Sib with calcineurin inhibitor-based prophylaxis (SibCNI, n = 1605). Cumulative incidences of CMV infection by day 180 were 42%, 37%, and 23%, respectively (P < .001). CMV disease was statistically comparable. CMV infection risk was highest for CMV-seropositive recipients (R+), but significantly higher in PTCy recipients regardless of donor (HaploCy [n = 545]: hazard ratio [HR], 50.3; SibCy [n = 279]: HR, 47.7; SibCNI [n = 1065]: HR, 24.4; P < .001). D+/R- patients also had increased risk for CMV infection. Among R+ or those developing CMV infection, HaploCy had worse overall survival and nonrelapse mortality. Relapse was unaffected by CMV infection or serostatus. PTCy was associated with lower chronic graft-versus-host disease (GVHD) overall, but CMV infection in PTCy recipients was associated with higher chronic GVHD (P = .006). PTCy, regardless of donor, is associated with higher incidence of CMV infection, augmenting the risk of seropositivity. Additionally, CMV infection may negate the chronic GVHD protection of PTCy. This study supports aggressive prevention strategies in all receiving PTCy.


Assuntos
Ciclofosfamida/efeitos adversos , Infecções por Citomegalovirus , Citomegalovirus , Transplante de Células-Tronco Hematopoéticas , Adolescente , Adulto , Idoso , Aloenxertos , Criança , Pré-Escolar , Doença Crônica , Ciclofosfamida/administração & dosagem , Infecções por Citomegalovirus/induzido quimicamente , Infecções por Citomegalovirus/mortalidade , Intervalo Livre de Doença , Feminino , Doença Enxerto-Hospedeiro/tratamento farmacológico , Doença Enxerto-Hospedeiro/metabolismo , Humanos , Incidência , Masculino , Pessoa de Meia-Idade , Taxa de Sobrevida
8.
Blood ; 137(4): 556-568, 2021 01 28.
Artigo em Inglês | MEDLINE | ID: mdl-33104215

RESUMO

Social determinants of health, including poverty, contribute significantly to health outcomes in the United States; however, their impact on pediatric hematopoietic cell transplantation (HCT) outcomes is poorly understood. We aimed to identify the association between neighborhood poverty and HCT outcomes for pediatric allogeneic HCT recipients in the Center for International Blood and Marrow Transplant Research database. We assembled 2 pediatric cohorts undergoing first allogeneic HCT from 2006 to 2015 at age ≤18 years, including 2053 children with malignant disease and 1696 children with nonmalignant disease. Neighborhood poverty exposure was defined a priori per the US Census definition as living in a high-poverty ZIP code (≥20% of persons below 100% federal poverty level) and used as the primary predictor in all analyses. Our primary outcome was overall survival (OS), defined as the time from HCT until death resulting from any cause. Secondary outcomes included relapse and transplantation-related mortality (TRM) in malignant disease, acute and chronic graft-versus-host disease, and infection in the first 100 days post-HCT. Among children undergoing transplantation for nonmalignant disease, neighborhood poverty was not associated with any HCT outcome. Among children undergoing transplantation for malignant disease, neighborhood poverty conferred an increased risk of TRM but was not associated with inferior OS or any other transplantation outcome. Among children with malignant disease, a key secondary finding was that children with Medicaid insurance experienced inferior OS and increased TRM compared with those with private insurance. These data suggest opportunities for future investigation of the effects of household-level poverty exposure on HCT outcomes in pediatric malignant disease to inform care delivery interventions.


Assuntos
Transplante de Células-Tronco Hematopoéticas , Pobreza , Determinantes Sociais da Saúde , Adolescente , Causas de Morte , Criança , Pré-Escolar , Doença Crônica/mortalidade , Doença Crônica/terapia , Bases de Dados Factuais , Feminino , Seguimentos , Doença Enxerto-Hospedeiro/epidemiologia , Doença Enxerto-Hospedeiro/etiologia , Transplante de Células-Tronco Hematopoéticas/efeitos adversos , Transplante de Células-Tronco Hematopoéticas/economia , Transplante de Células-Tronco Hematopoéticas/mortalidade , Transplante de Células-Tronco Hematopoéticas/estatística & dados numéricos , Humanos , Lactente , Infecções/epidemiologia , Cobertura do Seguro/estatística & dados numéricos , Masculino , Medicaid , Neoplasias/mortalidade , Neoplasias/terapia , Recidiva , Análise de Sobrevida , Transplante Homólogo , Resultado do Tratamento , Estados Unidos
9.
Clin Exp Rheumatol ; 41(5): 1179-1182, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-36700641

RESUMO

OBJECTIVES: To evaluate the association between liver fibrosis and the HLACw6 allele in psoriatic arthritis (PsA) patients. METHODS: A retrospective longitudinal study involving PsA patients with determination of the HLA-Cw6 allele was performed. Liver fibrosis was estimated by using the FIB-4 (fibrosis-4) score. A multivariate logistic model was undertaken to assess the odds ratio (OR), with its 95% confidence interval, of liver fibrosis after adjustment for potential confounding factors. RESULTS: A total of 209 PsA patients were included: 25.3% HLA-Cw6 were positive, 59.8% were receiving biological disease-modifying anti-rheumatic drugs (bDMARDs), 29.6% had arterial hypertension (AHT), 24% dyslipidaemia, and 4.2% acute myocardial infarction (AMI). The HLA-Cw6 allele was more frequent in PsA patients with normal FIB-4 values (p=0.024), as opposed to AHT (p=0.002), AMI (p=0.023) and dyslipidaemia (p=0.030), which were found more frequently in subjects with altered FIB-4 values. The presence HLA-Cw6 and the use of bDMARDs were confirmed as protective factors against liver fibrosis (OR 0.210, 0.062-0.707, p=0.012 and OR 0.397, 0.166-0.949, p=0.038, respectively). Conversely, AHT emerged as a risk factor (OR 2.973, 1.125-7.858, p=0.028). CONCLUSIONS: In PsA, the HLA-Cw6 allele and bDMARDs behave as protective factors for liver fibrosis, while AHT is an independent risk factor.


Assuntos
Antirreumáticos , Artrite Psoriásica , Psoríase , Humanos , Artrite Psoriásica/tratamento farmacológico , Artrite Psoriásica/genética , Psoríase/tratamento farmacológico , Alelos , Estudos Longitudinais , Estudos Retrospectivos , Fatores de Proteção , Antígenos HLA-C/genética , Antirreumáticos/uso terapêutico , Cirrose Hepática/diagnóstico , Cirrose Hepática/genética , Cirrose Hepática/prevenção & controle , Terapia Biológica
10.
Clin Rehabil ; 37(10): 1332-1346, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36987581

RESUMO

OBJETIVE: Chronic ankle instability is generally associated with ankle sprain. Its consequences can be measured by means of patient-reported outcome measures (PROMs). The aim of this review is to identify the PROMs specifically available for chronic ankle instability and to evaluate their methodological quality and that of the cross-cultural adaptations made. DATA SOURCES: Papers were retrieved from PubMed, Embase, Scopus and Google Scholar databases, with no time limit applied, based on the following inclusion criteria: (1) type of participants: patients with chronic ankle instability, over 18 years of age; (2)type of study: those specifically focused on this pathology, using PROMs specific to chronic ankle instability and published in English; (3) type of outcome: measurement properties based on COSMIN criteria in patient-reported outcomes associated with chronic ankle instability. METHODS: This systematic review, following the COSMIN checklist, was conducted to determine the methodological quality of PROMs specific to foot and ankle pathologies, for patients presenting chronic ankle instability. RESULTS: Of the 576 studies identified in the initial search, 34 were included in the final analysis of measurement properties. Four - the Ankle Instability Instrument, the Chronic Ankle Instability Scale, the Cumberland Ankle Instability Tool and the Identification of Functional Ankle Instability - were original questionnaires, and the remaining 30 were cross-cultural adaptations. CONCLUSION: The Cumberland Ankle Instability Tool and the Identification of Functional Ankle Instability questionnaires can be useful instruments for evaluating chronic ankle instability, both in patients with this condition and also in non-pathological patients.


Assuntos
Tornozelo , Instabilidade Articular , Humanos , Adolescente , Adulto , Psicometria , Articulação do Tornozelo , Medidas de Resultados Relatados pelo Paciente , Inquéritos e Questionários , Instabilidade Articular/diagnóstico , Instabilidade Articular/etiologia , Qualidade de Vida
11.
Ecotoxicol Environ Saf ; 256: 114883, 2023 May.
Artigo em Inglês | MEDLINE | ID: mdl-37043946

RESUMO

This study proposes using the network of urban gardens to grow vegetables and to monitor air quality, and it also evaluates whether food grown on a clean substrate in an urban environment is safe for consumption. For this purpose, lettuces were exposed to different degrees of air pollution in five locations in the city of Copenhagen, plus a reference site. Six specimens were placed at each site and, after the exposure period, half of each sample was washed. Subsamples were then digested by a total extraction method and a bioaccessible extraction method, and the concentration of 23 elements subsequently measured by ICP-MS. The results showed that exposed samples in areas of higher atmospheric pollution accumulated a larger amount of trace elements associated with typical urban sources. They also highlighted the importance of washing food to remove particles that adhere to their surface. However, bioaccessibility testing demonstrated the importance of including bioaccessibility in risk analyses and how this factor varies depending on the type of matrix. In this case, bioaccessibility was higher for plant tissue than for particulate matter. Lastly, metal concentrations in lettuce were compared with legal values and an analysis of daily intake showed that the levels in Copenhagen were within limits for the protection of human health.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Humanos , Lactuca , Biomarcadores Ambientais , Monitoramento Ambiental/métodos , Poluição Ambiental/análise , Poluição do Ar/análise , Material Particulado/análise , Poluentes Atmosféricos/análise
12.
J Shoulder Elbow Surg ; 32(6S): S46-S52, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36822501

RESUMO

BACKGROUND: Revision of unstable reverse shoulder arthroplasty (RSA) is significantly challenging, with recurrence rates ranging from 20% to 40%. The purpose of this study was to identify factors associated with recurrent instability. The factors studied included (1) indication for revision RSA (failed primary RSA vs. failed revision RSA), (2) previous attempt at stabilization, (3) mechanism of instability, (4) clinical history of instability, and (5) surgical technique. Outcomes were reported in patients with 2-year follow-up. METHODS: All patients undergoing RSA for instability at our institution were identified. A total of 43 surgical procedures in 36 patients were included. Arthroplasty indication prior to instability (14 failed primary RSAs vs. 22 failed revision RSAs), instances of prior attempts at stabilization (14 patients treated at outside institution), mechanism-of-instability classification, clinical history of instability (17 recurrent and 26 chronic cases), and surgical technique were collected. Stability at final follow-up (minimum, 12 months) and clinical outcomes at 2-year follow-up were assessed. RESULTS: Overall, 32 of 36 patients (89%) required 38 revisions to achieve stability at final follow-up (mean, 53 ± 47 months; range, 12-210 months). On comparison of stability by indication, stability was achieved in 13 of 14 patients (93%) in the failed primary group (mean, 65 ± 59 months; range, 12-210 months) compared with 19 of 22 (86%) in the failed revision group (mean, 45 ± 36 months; range, 12-148 months; P = .365). The average number of procedures per patient was 3 (range, 2-10) in the failed primary group vs. 4.5 (range, 3-7) in the failed revision group (P = .008). Stability was achieved in 12 of 14 patients (86%) with a history of failed stabilization procedures. The most common mechanism leading to persistent instability was loss of compression. Stability was achieved in 14 of 16 patients treated for recurrent instability compared with 18 of 20 treated for chronically locked dislocation (P = .813). Continued instability occurred in 33% of patients who underwent glenoid side-only management, 33% who underwent humeral side-only management, and 10% who underwent bipolar revision tactics. At 2-year follow-up, stability was achieved in 18 of 21 patients, with improvements in the American Shoulder and Elbow Surgeons (ASES) score, forward flexion, abduction, external rotation, and the Simple Shoulder Test score (P = .016, P < .01, P = .01, P < .01, and P = .247, respectively). CONCLUSION: Patients who underwent multiple revisions after failed previous arthroplasty will require more surgical attempts to achieve stability compared with patients who underwent a revision after failed primary RSA. Loss of compression was the most common mechanism of persistent instability. Stabilization was more reliably achieved in cases of recurrent instability than in cases of chronically locked dislocation. Continued instability was noted in one-third of patients who underwent humeral side-only or glenoid side-only revisions and in 10% of those who underwent bipolar revisions. Patients in whom stabilization was successful had improved clinical outcomes.


Assuntos
Artroplastia do Ombro , Luxações Articulares , Articulação do Ombro , Humanos , Artroplastia do Ombro/efeitos adversos , Articulação do Ombro/cirurgia , Escápula/cirurgia , Úmero/cirurgia , Luxações Articulares/cirurgia , Fatores de Risco , Resultado do Tratamento , Estudos Retrospectivos , Amplitude de Movimento Articular , Reoperação/métodos
13.
Int J Mol Sci ; 24(4)2023 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-36835561

RESUMO

The cpdB gene is pro-virulent in avian pathogenic Escherichia coli and in Salmonella enterica, where it encodes a periplasmic protein named CpdB. It is structurally related to cell wall-anchored proteins, CdnP and SntA, encoded by the also pro-virulent cdnP and sntA genes of Streptococcus agalactiae and Streptococcus suis, respectively. CdnP and SntA effects are due to extrabacterial hydrolysis of cyclic-di-AMP, and to complement action interference. The mechanism of CpdB pro-virulence is unknown, although the protein from non-pathogenic E. coli hydrolyzes cyclic dinucleotides. Considering that the pro-virulence of streptococcal CpdB-like proteins is mediated by c-di-AMP hydrolysis, S. enterica CpdB activity was tested as a phosphohydrolase of 3'-nucleotides, 2',3'-cyclic mononucleotides, linear and cyclic dinucleotides, and cyclic tetra- and hexanucleotides. The results help to understand cpdB pro-virulence in S. enterica and are compared with E. coli CpdB and S. suis SntA, including the activity of the latter on cyclic-tetra- and hexanucleotides reported here for the first time. On the other hand, since CpdB-like proteins are relevant to host-pathogen interactions, the presence of cpdB-like genes was probed in eubacterial taxa by TblastN analysis. The non-homogeneous genomic distribution revealed taxa with cpdB-like genes present or absent, identifying eubacteria and plasmids where they can be relevant.


Assuntos
Proteínas de Escherichia coli , Salmonella enterica , Streptococcus suis , Escherichia coli/metabolismo , Salmonella enterica/metabolismo , Streptococcus suis/metabolismo , Virulência , AMP Cíclico , Genômica , Proteínas de Escherichia coli/metabolismo , 2',3'-Nucleotídeo Cíclico Fosfodiesterases/genética
14.
J Biol Chem ; 297(5): 101257, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34597669

RESUMO

Healing of cutaneous wounds requires the collective migration of epithelial keratinocytes to seal the wound bed from the environment. However, the signaling events that coordinate this collective migration are unclear. In this report, we address the role of phosphorylation of eukaryotic initiation factor 2 (eIF2) and attendant gene expression during wound healing. Wounding of human keratinocyte monolayers in vitro led to the rapid activation of the eIF2 kinase GCN2. We determined that deletion or pharmacological inhibition of GCN2 significantly delayed collective cell migration and wound closure. Global transcriptomic, biochemical, and cellular analyses indicated that GCN2 is necessary for maintenance of intracellular free amino acids, particularly cysteine, as well as coordination of RAC1-GTP-driven reactive oxygen species (ROS) generation, lamellipodia formation, and focal adhesion dynamics following keratinocyte wounding. In vivo experiments using mice deficient for GCN2 validated the role of the eIF2 kinase during wound healing in intact skin. These results indicate that GCN2 is critical for appropriate induction of collective cell migration and plays a critical role in coordinating the re-epithelialization of cutaneous wounds.


Assuntos
Movimento Celular , Queratinócitos/enzimologia , Proteínas Serina-Treonina Quinases/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Cicatrização , Aminoácidos/metabolismo , Animais , Linhagem Celular Transformada , Adesões Focais/genética , Adesões Focais/metabolismo , Humanos , Queratinócitos/patologia , Camundongos , Camundongos Knockout , Proteínas Serina-Treonina Quinases/genética , Pseudópodes/genética , Pseudópodes/metabolismo , Pele/enzimologia , Pele/lesões , Pele/patologia
15.
Hum Mol Genet ; 29(8): 1292-1309, 2020 05 28.
Artigo em Inglês | MEDLINE | ID: mdl-32191790

RESUMO

As the powerhouses of the eukaryotic cell, mitochondria must maintain their genomes which encode proteins essential for energy production. Mitochondria are characterized by guanine-rich DNA sequences that spontaneously form unusual three-dimensional structures known as G-quadruplexes (G4). G4 structures can be problematic for the essential processes of DNA replication and transcription because they deter normal progression of the enzymatic-driven processes. In this study, we addressed the hypothesis that mitochondrial G4 is a source of mutagenesis leading to base-pair substitutions. Our computational analysis of 2757 individual genomes from two Italian population cohorts (SardiNIA and InCHIANTI) revealed a statistically significant enrichment of mitochondrial mutations within sequences corresponding to stable G4 DNA structures. Guided by the computational analysis results, we designed biochemical reconstitution experiments and demonstrated that DNA synthesis by two known mitochondrial DNA polymerases (Pol γ, PrimPol) in vitro was strongly blocked by representative stable G4 mitochondrial DNA structures, which could be overcome in a specific manner by the ATP-dependent G4-resolving helicase Pif1. However, error-prone DNA synthesis by PrimPol using the G4 template sequence persisted even in the presence of Pif1. Altogether, our results suggest that genetic variation is enriched in G-quadruplex regions that impede mitochondrial DNA replication.


Assuntos
DNA Helicases/genética , DNA Polimerase gama/genética , DNA Primase/genética , Replicação do DNA/genética , DNA Polimerase Dirigida por DNA/genética , Quadruplex G , Enzimas Multifuncionais/genética , DNA Mitocondrial/genética , Genoma Mitocondrial/genética , Guanina/metabolismo , Humanos , Itália , Mitocôndrias/genética , Mutagênese/genética , Mutação/genética , Conformação de Ácido Nucleico , Sequenciamento Completo do Genoma
16.
Vox Sang ; 117(10): 1220-1229, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36102135

RESUMO

BACKGROUND AND OBJECTIVES: Extracorporeal photopheresis (ECP) has been shown to be an effective treatment for graft-versus-host disease (GvHD). However, information regarding lymphocyte collection for ECP in children is limited. The aim of this study was to analyse and compare lymphocyte collection for ECP in children using different devices and protocols. Moreover, we have studied both safety and variables of the infused product related to treatment efficacy. PATIENTS AND METHODS: This was a retrospective study of 91 patients who underwent 1524 apheresis procedures with either the COBE Spectra or Spectra Optia system. The comparison study between the Optia protocols (MNC and CMNC) was prioritized. We analysed 578 procedures using the Optia blood cell separator: 204 and 374 using the MNC and the CMNC protocol, respectively. RESULTS: The Optia CMNC protocol showed better collection efficiency, with increased lymphocyte collection per kg of body weight (p < 0.001). On multivariate analysis, the type of protocol showed no relationship with haematocrit or platelet loss. Most procedures were well-tolerated, with the most frequent adverse events related to venous access (21.7%). Seventy-one percent of patients had either partial or complete clinical GvHD response. In the multivariate model, only two variables were associated with a better response to ECP, younger age and a greater increase of B lymphocytes after treatment. CONCLUSION: Lymphocyte collection for ECP is well-tolerated in most children, achieving complete or partial response in more than half of GvHD patients. CMNC is the optimal software to perform lymphocyte collection in children.


Assuntos
Remoção de Componentes Sanguíneos , Doença Enxerto-Hospedeiro , Fotoferese , Remoção de Componentes Sanguíneos/métodos , Criança , Doença Enxerto-Hospedeiro/terapia , Humanos , Leucócitos Mononucleares , Fotoferese/métodos , Estudos Retrospectivos
17.
J Clin Apher ; 37(5): 420-429, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-35662241

RESUMO

INTRODUCTION: Mobilization regimes in pediatric patients at high risk for poor mobilization are not standardized across different institutions. We present a retrospective analysis of our experience with a high-dose granulocyte colony-stimulating factor (G-CSF) regime of 12 µg/Kg per body weight (BW) twice a day for 4 days used in high-risk patients. MATERIAL AND METHODS: We report the results of all pediatric patients mobilized with high-dose G-CSF between January 1999 and February 2021 in our center. A successful mobilization was defined as a peripheral blood (PB) CD34+ cell count of ≥10 CD34+ cells/µl on the fifth day of mobilization immediately before leukapheresis. A minimum cell yield of ≥2 × 106 CD34+ cells/Kg of BW was required for a successful collection. RESULTS: Of the 262 patients included in the analysis, mobilization failure was found in 27 (10.3%). In a univariate analysis, this was associated with age, weight, baseline diagnosis, and having undergone a previous mobilization cycle, the latter being the only factor that remained significantly associated in a multivariate analysis (P = 0.03). The 54 patients (20.6%) did not reach the minimum required CD34+ cell yield. 50.4% of the patients reported adverse events (AEs) during the mobilization period, and 23 (9.1%) reported 3 or more concomitant AEs. However, all of them were mild and did not affect the mobilization schedule. CONCLUSIONS: Although most high-risk pediatric patients are successfully mobilized with the high-dose G-CSF regime, this approach does not salvage all of them and significantly increases the presence of AEs in comparison to standard-dose regimes.


Assuntos
Mobilização de Células-Tronco Hematopoéticas , Transplante de Células-Tronco Hematopoéticas , Antígenos CD34/análise , Criança , Fator Estimulador de Colônias de Granulócitos/efeitos adversos , Mobilização de Células-Tronco Hematopoéticas/métodos , Humanos , Leucaférese , Estudos Retrospectivos
18.
J Shoulder Elbow Surg ; 31(7): 1515-1523, 2022 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35085600

RESUMO

BACKGROUND: Variations in humeral component designs in hemiarthroplasty and anatomic total shoulder arthroplasty cases can impact the degree of difficulty during a revision surgery that necessitates the removal of the humeral stem. However, no metric exists to define stem extraction effort nor to identify associated factors that contribute to extraction difficulty. The purpose of this study is to describe a method to quantify stem extraction difficulty and to define features that will impact the effort during stem removal. METHODS: This was a retrospective review of 58 patients undergoing revision of hemiarthroplasty or anatomic total shoulder arthroplasty requiring stem extraction. Each included patient had existing preoperative radiographic examination, an intraoperative video of the stem removal process, and explants available for analysis by 3 surgeons. The following factors were assessed for the impact on extraction difficulty: (1) preoperative features such as cement use, fill of proximal humerus, and stem design features; (2) intraoperative data on extraction time and bone removal; and (3) postoperative findings related to extraction artifacts (EAs). A scoring system was established to distinguish easy (Easy group) and difficult (Difficult group) stem removal cases and further used to identify the features that may affect intraoperative difficulty of stem removal. RESULTS: The Difficult group accounted for 26% (15/58) of the study population with an 18-minute average stem extraction time, average EA count of 69, and 35 mm of bone removed. The Easy group accounted for 74% (43/58) of patients, with a 4-minute average extraction time, average EA count of 23, and 10 mm of bone removed. Logistic regression model was able to correctly classify 82% of the cases, explaining 26.7% of the variance in humeral stem removal with cement and proximal coating variables. The likelihood of cemented stem removal being difficult is 5 times greater compared to an uncemented stem, and having proximal coating doubles the likelihood of a difficult stem removal compared to cases with no coating. CONCLUSIONS: Quantifying stem extraction difficulty is possible with intraoperative video as well as explant analysis. Preoperative features of the fixation type and specific features of stem design such as proximal coating will impact difficulty of stem extraction.


Assuntos
Artroplastia do Ombro , Articulação do Ombro , Prótese de Ombro , Artroplastia do Ombro/métodos , Cimentos Ósseos , Humanos , Úmero/diagnóstico por imagem , Úmero/cirurgia , Reoperação/métodos , Estudos Retrospectivos , Articulação do Ombro/diagnóstico por imagem , Articulação do Ombro/cirurgia , Resultado do Tratamento
19.
J Shoulder Elbow Surg ; 31(8): e386-e398, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35339705

RESUMO

BACKGROUND: The rationale for advances in implant design is to improve performance in comparison to their predecessors. The purpose of this study was to compare a newer, self-pressurizing peripheral peg glenoid to a traditional polyethylene pegged glenoid through biomechanical evaluation and a retrospective radiographic and clinical review. METHODS: Three testing conditions (uncemented, partially cemented, and fully cemented) were chosen to assess the 2 component designs in a foam block model. The number of hammer hits to seat the component, amount of time to seat the component, and resistance-to-seat were collected. The implants were then cyclically loaded following ASTM F2028-17 testing standard. Clinically, postoperative radiographs of patients with a self-pressurized glenoid component (n = 225 patients) and traditional glenoid component (n = 206 patients) were evaluated for radiolucent lines and glenoid seating at various timepoints. Clinical outcomes (American Shoulder and Elbow Surgeons Standardized Shoulder Assessment Form, Simple Shoulder Test, and visual analog scale pain scores) and complications were recorded. The presence of radiolucent lines at the bone-cement interface was evaluated using the Modified Franklin Grade and the Lazarus grade. RESULTS: The self-pressurizing glenoid design required significantly more hammer hits than traditional glenoid designs in all groups tested (P < .029). Moreover, the self-pressurizing design had significantly more resistance-to-seat than traditional components in both the uncemented and partially cemented group (P < .002). No difference in resistance-to-seat was found between designs in the fully cemented group. The uncemented and partially cemented groups did not survive the full 50,000 cycles; however the self-pressurizing design had significantly less motion than the traditional design (P < .001). No differences between component designs were found in the fully cemented group at 50,000 cycles. The self-pressurizing glenoid component had 0.005% radiographic radiolucent lines, and the traditional glenoid component had 45% radiographic radiolucent lines, with 38% of the radiolucencies in the traditional glenoid component group being defined as grade E. There were no progressive radiolucencies, differences in clinical outcomes, or complications at 2 years postoperatively. CONCLUSION: In the fully cemented condition, the 2 component designs had comparable performance; however, the differences in designs could be better observed in the uncemented group. The self-pressurizing all-polyethylene design studied has superior biomechanical stability. Clinically, the improved stability of the glenoid component correlated with a reduction of radiolucent lines and will likely lead to a reduction in glenoid component loosening.


Assuntos
Cavidade Glenoide , Articulação do Ombro , Seguimentos , Humanos , Polietileno , Desenho de Prótese , Falha de Prótese , Estudos Retrospectivos , Articulação do Ombro/diagnóstico por imagem , Articulação do Ombro/cirurgia , Resultado do Tratamento
20.
Trop Anim Health Prod ; 54(5): 299, 2022 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-36107260

RESUMO

The objective of this observational study was to estimate milk loss from subclinical mastitis (SCM) using a nonlinear one-phase exponential decay function fitted to the relationship between the sum of the California mastitis test scores of productive quarters (x1, 0 to 16) and daily milk production per cow (y, kg/day). The function was y = (a - b)e-c1*x1 + b, where a is the predicted y when x is zero, b is the y when x1 tends to infinity, and c1 is a rate constant. The fitted function was y = (10.02 - 5.76)e-0.06137*x1 + 5.76, with an adjusted coefficient of determination (R2adj) of 0.0692, a standard deviation of the residual (Sy.x) equal to 13.49, and an Akaike's information criterion corrected (AICC) of 3902.8. To this function, we added the multiplicative factors test day (x2, 1 to 12), the number of productive quarters (x3, 2, 3 or 4), months of age of cow (x4, 25 to 209), and days in milk (x5, 2 to 196), to adjust the decay function for their effects. The fitted model was y = [(9.65 - 3.95)e-0.03415*x1 + 3.95] (x2-0.1081) (x30.1049) (x40.1589) (x5-0.1972) with R2 of 0.3166, Sy.x = 11.38, and AICC = 3821.9. We used the adjusted decay function parameters to compute a conversion factor (CF, 0 to 1) each x1 integer value from 0 to 16 to project its actual y to that of an SCM-free udder (x = 0). Then, the CF for a x1 of 0 equals to 9.65/9.65 = 1, and for a x1 of 8 equals 8.28, so its CF would be 8.29/9.65 = 0.8588. A cow with a 5.5 kg/day milk production at an x1 score of 8 would have an SCM-free production of 5.5/0.8588 = 6.4 kg/day, and its daily milk loss would be 6.4-5.5 = 0.9 kg/day. The difference, multiplied by MX$ 5.50 (US$ 0.275), would result in an economic loss of 4.95 Mexican pesos per day. This procedure makes possible the timely on-site estimation of economic losses due to subclinical mastitis.


Assuntos
Doenças dos Bovinos , Mastite Bovina , Animais , Bovinos , Feminino , Glândulas Mamárias Animais , Leite , Dinâmica não Linear
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