Detalhe da pesquisa
1.
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.
PLoS Genet
; 20(4): e1011184, 2024 Apr 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-38683871
2.
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host.
Mol Biol Evol
; 41(1)2024 Jan 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-38168711
3.
RecGraph: recombination-aware alignment of sequences to variation graphs.
Bioinformatics
; 2024 Apr 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38676570
4.
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes.
J Infect Dis
; 2024 Jan 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-38245822
5.
SARS-CoV-2 transmissibility compared between variants of concern and vaccination status.
Brief Bioinform
; 23(2)2022 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35062017
6.
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease.
Bioinformatics
; 39(1)2023 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36440957
7.
Bayesian Inference of Clonal Expansions in a Dated Phylogeny.
Syst Biol
; 71(5): 1073-1087, 2022 08 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34893904
8.
Additive Uncorrelated Relaxed Clock Models for the Dating of Genomic Epidemiology Phylogenies.
Mol Biol Evol
; 38(1): 307-317, 2021 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-32722797
9.
The bounded coalescent model: Conditioning a genealogy on a minimum root date.
J Theor Biol
; 548: 111186, 2022 09 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-35697144
10.
Identification of Hidden Population Structure in Time-Scaled Phylogenies.
Syst Biol
; 69(5): 884-896, 2020 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32049340
11.
Assessment of the Potential of Vaccination to Combat Antibiotic Resistance in Gonorrhea: A Modeling Analysis to Determine Preferred Product Characteristics.
Clin Infect Dis
; 71(8): 1912-1919, 2020 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-31905399
12.
A dynamic power-law sexual network model of gonorrhoea outbreaks.
PLoS Comput Biol
; 15(3): e1006748, 2019 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-30849080
13.
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
Nucleic Acids Res
; 46(22): e134, 2018 12 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-30184106
14.
Using rapid point-of-care tests to inform antibiotic choice to mitigate drug resistance in gonorrhoea.
Euro Surveill
; 25(43)2020 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33124551
15.
Framework for DNA Quantification and Outlier Detection Using Multidimensional Standard Curves.
Anal Chem
; 91(11): 7426-7434, 2019 06 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-31056898
16.
Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance.
Syst Biol
; 67(4): 719-728, 2018 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29432602
17.
A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.
PLoS Comput Biol
; 14(2): e1005958, 2018 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-29401456
18.
outbreaker2: a modular platform for outbreak reconstruction.
BMC Bioinformatics
; 19(Suppl 11): 363, 2018 Oct 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-30343663
19.
Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks.
Mol Biol Evol
; 34(4): 997-1007, 2017 04 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28100788
20.
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.
Mol Biol Evol
; 34(10): 2537-2554, 2017 10 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28595308