Assessment of biostimulation and bioaugmentation for removing chlorinated volatile organic compounds from groundwater at a former manufacture plant.

Site in a former chemical manufacture plant in China was found contaminated with high level of chlorinated volatile organic compounds (CVOCs). The major contaminants chloroform (CF), 1,2-dichloroethane (1,2-DCA) and vinyl chloride (VC) in groundwater were up to 4.49 × 104, 2.76 × 106 and 4.35 × 104 µg/L, respectively. Ethene and methane were at concentrations up to 2219.80 and 165.85 µg/L, respectively. To test the hypothesis that the CVOCs in groundwater at this site could be removed via biodegradation, biomarker analyses and microcosm studies were conducted. Dehalococcoides 16S rRNA gene and VC-reductase gene vcrA at densities up to 1.5 × 104 and 3.2 × 104 copies/L were detected in some of the groundwater samples, providing strong evidence that dechlorinating bacteria were present in the aquifer. Results from the microcosm studies showed that at moderate concentrations (CF about 4000 µg/L and 1,2-DCA about 100 µg/L), CF was recalcitrant under natural condition but was degraded under biostimulation and bioaugmentation, while 1,2-DCA was degraded under all the three conditions. At high concentration (CF about 1,000,000 µg/L and 1,2-DCA about 20,000 µg/L), CF was recalcitrant under all the three treatments and 1,2-DCA was only degraded under bioaugmentation, indicating that high concentrations of contaminants were inhibitory to the bacteria. Electron donors had influence on the degradation of contaminants. Of the four fatty acids (pyruvate, acetate, propionate and lactate) examined, all could stimulate the degradation of 1,2-DCA at both moderate and high concentrations, whereas only pyruvate and acetate could stimulate the degradation of CF at moderate concentration. In the microcosms, the observed first-order degradation rates of CF and 1,2-DCA were up to 0.12 and 0.11/day, respectively. Results from the present study provided scientific basis for remediating CVOCs contaminated groundwater at the site.

Effects of 1,1,1-trichloroethane on enzymatic activity and bacterial community in anaerobic microcosm form sequencing batch reactors.

1,1,1-Trichloroethane (TCA), a major organic and groundwater contaminant, has very strong toxic effects on humans, plants and microorganisms. Effects of TCA on enzymatic activity and microbial diversity were investigated in the anaerobic sequencing batch reactor (ASBR) under methanogenic, nitrate-reducing, sulfate-reducing and benzene/toluene degrading conditions. The activities of three enzymes (lactate dehydrogenase, phosphatase and protease) were significantly decreased in the presence of 5 mg/L TCA. Within these three affected enzymes, phosphatase activity may serve as a noteworthy marker of bacterial toxicity. The activity of phosphatase was 0.2 U/L in methanogenic conditions with 5 mg/L TCA, which was 99% lower than the controls, and the enzyme activity was 18.6 U/L in methanogenic conditions with 1 mg/L TCA, which was 7% lower than the controls. DGGE profiles showed that TCA altered the bacterial community distribution and diversity obviously during the 21 day of TCA exposure. The enzyme activities decreased second lowest but TCA degrading strains Clostridium sp. DhR-2/LM-G01, Bacterial clone DCE25 and Bacterial clone DPHB06 were enriched in the methanogenic ASBR amended TCA.

Effect of in vitro cultured Anoectochilus formosanus on lipid metabolism in clinical uses.

A clinical study was performed on the effect of in vitro cultured Anoectochilus formosanus HAYATA on lipid-metabolism. Sixty-six volunteers, including 36 healthy, 14 high-triglyceride-, 11 high-cholesterol- and 5 high-triglyceride- and high cholesterol- subjects, were administrated with A. formosanus (450 mg/day) for 6 months or 12 months. A. formosanus significantly decreased the concentrations of the serum levels of cholesterol, low density lipoprotein and very low density lipoprotein in all volunteers. The results of the present study suggested that A. formosanus might function as a liver activator resulting in improvement of lipid-metabolism.

Prognostic value of Sox2 expression in digestive tract cancers: A meta-analysis.

The aim of the present study was to accurately evaluate the association of Sox2 expression with the survival of patients with digestive tract cancers. Relevant literatures were identified by comprehensively searching databases including the Pubmed, Embase, CBMdisc, and Wanfang (up to October 2014). A meta-analysis was performed to clarify the association between Sox2 expression and overall survival or clinicopathological parameters of patients with digestive tract cancers (esophageal, gastric, and colorectal cancers). The results showed a significant association between high Sox2 expression and poor overall survival in patients with digestive tract carcinomas (HR=1.55, 95% CI=1.04-2.31), especially for patients with esophageal cancer (HR=2.04, 95%CI=1.30-3.22), colorectal cancer (HR=1.40, 95% CI=1.04-1.89), and digestive tract adenocarcinoma (HR=1.80, 95% CI=1.12-2.89), for Europeans (HR=1.98, 95% CI=1.44-2.71) or patients who did not receive neoadjuvant treatment (HR=1.73, 95% CI=1.10-2.72). Furthermore, Sox2 over-expression was highly correlated with vascular invasion (OR=1.86, 95% CI=1.25-2.77) and poor differentiation (OR=1.88, 95% CI=1.14-3.08), especially in esophageal and colorectal cancers. In conclusion, Sox2 expression may serve as a novel prognostic factor for patients with digestive tract cancers. Over-expression of Sox2 that is correlated with vascular invasion and poor differentiation suggests poor outcomes of patients with digestive tract cancers.

Clinicopathological and prognostic role of SIRT1 in breast cancer patients: a meta-analysis.

BACKGROUND: Silent mating type information regulation 2 homolog-1 (SIRT1) plays an important role in the progression and development of cancer, including breast cancer. However, the association between SIRT1 expression and clinicopathological parameters and prognosis in breast cancer remains inconclusive. To accurately evaluate the significance of SIRT1 expression in breast cancer, a meta-analysis based on published studies was performed. METHODS: The PubMed, Embase, ISI Web of Science, Science Direct, and Chinese National Knowledge Infrastructure databases were screened to retrieve relevant literature. The reported odds ratios (ORs) and hazard ratios (HRs) and their 95% corresponding confidence intervals (CIs) were pooled to estimate the strength of specific associations. RESULTS: Six studies involving 604 patients were included in the meta-analysis. The pooled analyses showed a significant correlation between SIRT1 expression and poor disease-free survival (DFS) (HR = 3.07, 95% CI: 1.92-4.91, Z = 4.69, P < 0.001) and overall survival (OS) (HR = 3.94, 95% CI: 2.19-7.10, Z = 4.57, P < 0.001). SIRT1 expression also significantly correlated with high TNM stage (pooled OR = 2.92, 95% CI: 1.84-4.63) and lymph node metastasis (pooled OR = 3.22, 95% CI: 0.98-10.57). CONCLUSIONS: Our meta-analysis shows that SIRT1 expression correlates with unfavorable clinical outcomes. We suggest that SIRT1 expression may have potential value in the pathological diagnosis and clinical treatment of patients with breast cancer. More studies are warranted to investigate the effect of SIRT1 on the survival of breast cancer patients.

Petroleum contamination of soil and water, and their effects on vegetables by statistically analyzing entire data set.

Aliphatic hydrocarbons have been used to assess total oil concentrations, petroleum sources, and petroleum degradation. In this study, surface soil, groundwater, surface water, and vegetables were collected from the outskirts of Xi'an, the largest city in northwestern China, and the samples were analyzed for aliphatic hydrocarbon contents. The concentrations of n-alkanes were 1.06-4.01 µg/g in the soil. The concentrations and the geochemical characteristics of n-alkanes showed that the low carbon number hydrocarbons were mainly from petroleum sources, whereas the high carbon number hydrocarbons received more hydrocarbons from herbaceous plants. The concentrations of n-alkanes were 9.20-93.44 µg/L and 23.74-118.27 µg/L in the groundwater and the surface water, respectively. The water had characteristics of petroleum and submerged/floating macrophytes and was found in concentrations that would cause chronic disruption of sensitive organisms. The concentrations and geochemical characteristics of n-alkanes in Brassica chinensis L. and Apium graveolens were different, but both were contaminated by petroleum hydrocarbons. The results from principal component analysis (PCA) indicated that the sorption of n-alkanes to soil particles could not be described by linear models. The distributions of n-alkanes in vegetables were positively correlated with those in soil, and the correlation coefficient was up to 0.9310 using the constructed vectors. Therefore, the researchers should pay close attention to the effect of soil contamination on vegetables.

Correlation and prognostic value of SIRT1 and Notch1 signaling in breast cancer.

BACKGROUND: SIRT1 expression and Notch1 signaling have been implicated in tumorigenesis in many cancers, but their association with survival in breast cancer has not been determined. The purpose of this study was to assess the possible prognostic value of SIRT1, N1IC, and Snail expression in breast cancer patients. METHODS: Immunohistochemistry was performed to examine the expression of SIRT1, N1IC, and Snail, and the combined expression of SIRT1 and N1IC, using tissue microarrays containing breast cancer tissue and matched adjacent normal breast tissue from 150 breast cancer patients. Survival analysis was carried out using the Kaplan-Meier method. Univariate and multivariate analysis were used to evaluate the prognostic value of SIRT1, N1IC, Snail and combined SIRT1/N1IC expression, in addition to other clinicopathological factors, including grade, lymph node status, disease stage, and estrogen, progesterone, and human epidermal growth factor receptor 2 receptor status in breast carcinoma patients. RESULTS: SIRT1, N1IC, and Snail were all found to be highly expressed and an inverse correlation between SIRT1 and N1IC in breast cancer tissue. The three markers significantly correlated with lymph node status. Patients with low SIRT1 expression exhibited shorter overall survival (OS) and disease-free survival (DFS), and patients with combined low expression of SIRT1 and high expression of N1IC had the worse OS and DFS. Univariate and multivariate survival analysis revealed that low expression of SIRT1 and SIRT1-low/N1IC-high expression were independent prognostic factors for poor survival. CONCLUSIONS: These results suggest that low expression of SIRT1 or the combined low expression of SIRT1 and high expression of N1IC could be used as indicators of poor prognosis, and may represent novel therapeutic targets in breast cancer.

Notch1 single nucleotide polymorphism rs3124591 is associated with the risk of development of invasive ductal breast carcinoma in a Chinese population.

Accumulated evidence has revealed the presence of Notch receptor polymorphisms in non-tumorous diseases; however, few studies have investigated the association of Notch polymorphisms with breast cancer risk. A total of 100 invasive ductal carcinoma (IDC) and 50 ductal carcinoma in situ (DCIS) patients and 100 usual ductal hyperplasia (UDH) controls were genotyped for the following Notch receptor single nucleotide polymorphisms (SNPs) using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: Notch1, rs3124591; Notch2, rs11249433; Notch3, rs3815188, and rs1043994; and Notch4, rs367398, and rs520692. Immunohistochemistry was used to determine the effect of Notch polymorphisms on corresponding Notch protein expression in successfully genotyped patients. The frequency of rs3124591 TC genotype was significantly higher in IDC (24.7%, 20/81) and DCIS (30%, 12/40) patients than in UDH controls (8%, 8/97) (P = 0.002 and P = 0.011, respectively). However, the distribution of other SNP genotypes was not significantly different between IDC and DCIS patients and UDH controls. The frequency of TC genotype was significantly higher in poorly differentiated tumors than in well-differentiated and moderately differentiated tumors (P = 0.022). Importantly, a positive correlation between the rs3124591 TC genotype and high Notch1 protein expression was observed in DCIS patients (P = 0.043) but not in IDC patients. This is the first study to suggest an increased risk of IDC and DCIS of the breast for the Notch1 rs3124591 variant. Furthermore, given the inconsistent associations between the rs3124591 variant and Notch1 expression in IDC and DCIS, this variant may affect breast cancer risk through mechanisms in the latter stage other than alterations in Notch1 protein expression.

[Sand box study on fingering front morphology for NAPLs infiltrated in homogeneous porous media].

Abstract: 1,2-dichloroethane and tetrachlorethylene were studied in four different unsaturated porous media to determine the impact of the properties of media and fluids on the infiltration aided by digital image analysis technique. The results indicated that the whole process of NAPLs migration can be recorded dynamically using the digital image analysis technique. The unstable flow "fingering" occurred in the process of infiltration. Fingering mechanisms such as splitting, coalescing, and shielding were observed in the process of fingering. Front morphology of the infiltration was influenced by the properties of porous media and fluids. The vertical migration rates and the growth rates of area development were positively correlated to the size of medium particle and the density of the NAPLs (except for toluene) in the process of infiltrating. The number of fingers and the wavelength of fingering were also closely correlated with the properties of media and fluid. DNAPLs infiltrated faster compared with LNAPLs, which resulted in larger pollution area within the same infiltration time. It can be concluded that the environmental risk of DNAPLs is significantly greater than the LNAPLs.

Effects of pollution sources and soil properties on distribution of polycyclic aromatic hydrocarbons and risk assessment.

In this study, the concentrations of polycyclic aromatic hydrocarbons (PAHs) in soil profiles and the soil properties were analyzed in Hunpu, a typical wastewater irrigation area, northeast of China. The total concentrations of 16 priority control PAHs ranged from 7.88 to 2,231.42 µg/kg. Among 16 PAHs, the most abundant was Phenanthrene and the 3- or 4- ring PAHs were predominant. The PAH concentrations were higher in the upland fields near the oil wells, whereas leaching of PAH into the groundwater caused low concentrations in the paddy fields. The geochemical indices and the results from the principal component analysis of all 16 PAHs indicated that PAHs were mainly from atmospheric dusts in the top soil in I-1P/I-3P/I-7P and through soil profiles in I-4U/I-5P/I-8U, whereas those in the bottom layers were mainly from petroleum production and wastewater irrigation in I-1P/I-3P/I-7P and through soil profiles in I-2U and I-6U. In the redundancy analysis, PAHs exhibited negative correlation with pH, depth, silt, and clay, but had positive correlation with sand and organic matter. Finally, total toxic equivalent in the soil profiles and the calculated health risk of PAHs in the surface soil using contaminated land exposure assessment model elucidated the cancer risk that PAHs pose on human health in the Hunpu region.

[Influence of image process on fractal morphology characterization of NAPLs vertical fingering flow].

Dyes are frequently used to visualize fingering flow pathways, where the image process has an important role in the result analysis. The theory of fractal geometry is applied to give quantitative description of the stain patterns via image analysis, which is helpful for finger characterization and prediction. This description typically involves two parameters, a mass fractal dimension (D(m)) relative to the area, and a surface fractal dimension (D(s)) relative to the perimeter. This work detailed analyzes the influence of various choices during the thresholding step that transformed the origin color images to binary ones which are needed in the fractal analysis. One hundred and thirty images were obtained from laboratory two-dimension sand box infiltration experiments of four dyed non-aqueous phase liquids. Detailed comparisons of D(m) and D(s) were made respectively, considering a set of threshold algorithms and the filling of lakes. Results indicate that adjustments of the saturation threshold influence are less on both D(m) and D(s) in the laboratory experiments. The brightness threshold adjustments decrease the D(m) by 0.02 and increase the D(s) by 0.05. Filling lakes influence the D(m) less while the D(s) decrease by 0.10. Therefore the D(m) was recommended for further analysis to avoid subjective choices' influence in the image process.

[Fractal characteristics of capillary finger flow for NAPLs infiltrated in porous media].

Non-aqueous phase liquids (NAPLs) like petroleum hydrocarbons and chlorinated solvents have resulted in contamination of soils and ground water, which aroused widespread concern. It's quite important to delineate pollution area for remediation according to different soil types with pollutants properties in consideration. In this paper, a two-dimension visual sand box apparatus was constructed, with four typical NAPLs selected for infiltration experiments conducted in initially dry porous media. The main driving force was identified and fingering patterns were compared. The fractal dimension was used to give quantitative description. The present work indicates that the main driving force was capillary forces and the mechanism was the capillary fingering. The fingers varied from skeletal patterns to fleshy patterns and the infiltration area increased when the capillary number and the bond number decreased for NAPLs with the same level of viscosity. The high viscous force resulted in larger finger width and infiltration area. The same change between fluids happened in finer media. Fractal dimensions were positively correlated with the finger width and infiltration area, which is helpful in the pollution area characterization.

Biodegradation of perchloroethylene and chlorophenol co-contamination and toxic effect on activated sludge performance.

This study investigated the effects of PCE and 2-CP co-contamination on growth of microbial community in terms of enzymatic activity and microbial diversity in activated sludge. Results showed that the activities of three key enzymes (dehydrogenase, phosphatase and urease) decreased significantly when PCE (in the range of 5-150 mg/L) was mixed with 2-CP (in the range of 25-150 mg/L). Especially, activity of dehydrogenase decreased by more than 93% as the concentration of PCE and 2-CP both reached 150 mg/L. PCR-DGGE revealed that short-term exposure with PCE and 2-CP did not lead to shift in the microbial community structure, while clone library demonstrated a significant change in the microbial diversity after long-term exposure. As the population of Alphaproteobacteria and Gamaproteobacteria decreased, with Actinobacteria eventually disappeared, species including Firmicutes, Bacteroidetes and Synergistetes became dominating groups. This study demonstrated that co-contamination with PCE and 2-CP affected the performance of activated sludge in a significant way.

Pharmacologically active compounds in the Anoectochilus and Goodyera species.

The extract of Anoectochilus formosanus showed significant activity in decreasing the levels of the cytosolic enzymes LDH, GOT, and GPT, and the result demonstrated that A. formosanus possessed prominent hepatoprotective activity against CCl(4)-induced hepatotoxicity. Moreover, in the results of the test using aurothioglucose-induced obese mice, the extract showed a significant antihyperliposis effect. A. formosanus grown in the wild and propagated by tissue culture contain ten compounds, including a major known component, (3R)-3-(beta-D-glucopyranosyloxy)butanolide (kinsenoside; 1), and two new components, (3R)-3-(beta-D-glucopyranosyloxy)-4-hydroxybutanoic acid (2) and 2-[(beta-D-glucopyranosyloxy)methyl]-5-hydroxymethylfuran (3), along with the known compounds, isopropyl-beta-D-glucopyranoside (4), (R)-3,4-dihydroxybutanoic acid gamma-lactone (5), 4-(beta-D-glucopyranosyloxy) benzyl alcohol (6), (6R,9S)-9-(beta-D-glucopyranosyloxy)megastigma-4,7-dien-3-one (7), and (3R)-3-(beta-D-glucopyranosyloxy)-4-hydroxybutanolide (8). Since a higher concentration of kinsenoside (1) was detected in the crude drugs A. formosanus and A. koshunensis by high-performance liquid chromatography (HPLC) analysis, we proved a simple purification system for kinsenoside (1), giving 180 mg of kinsenoside (1) from 1 g of dried samples for further pharmacological experiments. In an anti-hyperliposis assay using high-fat-diet rats, 1 significantly reduced the weights of the body and the liver, and also decreased the triglyceride level in the liver compared to those of control rats. On the other hand, the epimer of 1, (3S)-3-(beta-D-glucopyranosyloxy)butanolide, goodyeroside A (9), which was isolated from the Goodyera species, had no effect for anti-hyperliposis. In aurothioglucose-induced obese mice, 1 suppressed the body and liver weight increase, significantly ameliorated the triglyceride level in the liver, and also reduced the deposition of uterine fat pads. The anti-hepatoxic activities of 9 and goodyerosides B (10) were studied on injury induced by CCl(4) in primary cultured rat hepatocytes by measuring the levels of LDH, GOT, and GPT. In the CCl(4)-treated control group, there were marked increases in LDH, GOT, and GPT activities compared with the normal group. In contrast, these levels were suppressed in 9- and 10-treated groups. Goodyerin (11), a new typical flavone glycoside, exhibited a significant and dose-dependent sedative and anticonvulsant effect.

[Estimation of forest canopy closure by using partial least square regression].

Based on remote sensing and forest resources inventory data, this paper approached the feasibility of using Bootstrap approach to select optimal variables and using partial least square (PLS) regression to build a model for estimating forest canopy closure. The results showed that whether using a model built with all variables or a model with the optimal variables selected by Bootstrap approach, the relative deviation in estimating forest canopy closure was about 5%. The optimal variables selected in this paper differed greatly with those in the studies for other areas, suggesting that besides selection method, zonal vegetation and terrain could also induce the differences of selected optimal variables for the estimation of forest canopy closure.

Hepatoprotective and antihyperliposis activities of in vitro cultured Anoectochilus formosanus.

The pharmacological effects of an aqueous extract of the whole plants of in vitro cultured Anoectochilus formosanus were investigated experimentally for hepatoprotective and antihyperliposis activities. The extract showed significant antihepatotoxic activity against carbon tetrachloride induced cytotoxicity in primary cultured rat hepatocytes. In an assay for antihyperliposis using aurothioglucose-induced obese mice, the extract suppressed significantly the increase in the weights of body and liver, ameliorated triglyceride levels in the liver and serum, and also significantly reduced the deposition of adipose tissue.

Sedative and anticonvulsant activities of goodyerin, a flavonol glycoside from Goodyera schlechtendaliana.

Goodyerin is a flavonol glycoside isolated from the whole plants of Goodyera schlechtendaliana which has been used as a substitute for the crude drug, Anoectochilus formosanus. The pharmacological properties of goodyerin were assayed for effects on spontaneous locomotor activity, on pentobarbital-induced hypnosis, and on anticonvulsant activity against picrotoxin-induced seizures in rodents. Goodyerin exhibited a significant and dose-dependent sedative and anticonvulsant effect.