Genetic evaluation of Atlantic salmon for growth traits incorporating SNP markers.

Genetic evaluations of individual fish were calculated for growth traits in North American Atlantic salmon with and without inclusion of genetic markers. The number of SNP markers was reduced to 6,000 and further to 270 in order to reduce the problem of overparameterization. SNP genotypes were predicted for all ungenotyped animals in the pedigree. Analysis of traits used a model with polygenic effects and SNP markers together. Polygenic effects refer to the additive genetic effects that remain after accounting for SNP genotypes. SNP marker genotypes were included as covariates to evaluate fish for growth traits (weight and length) in different environments (freshwater and seawater) with genders separated. Including regressions on SNP marker genotypes reduced the sum of squares of residuals by 2.7%-12.5% and increased the variability of Mendelian sampling effects (i.e., within-family variation) compared to traditional animal model evaluations. Genetic evaluations may be carried out with a few hundred markers which may be more affordable for genotyping large numbers of fish.

Variation in temperature tolerance among families of Atlantic salmon (Salmo salar) is associated with hypoxia tolerance, ventricle size and myoglobin level.

In fishes, performance failure at high temperature is thought to be due to a limitation on oxygen delivery (the theory of oxygen and capacity limited thermal tolerance, OCLTT), which suggests that thermal tolerance and hypoxia tolerance might be functionally associated. Here we examined variation in temperature and hypoxia tolerance among 41 families of Atlantic salmon (Salmo salar), which allowed us to evaluate the association between these two traits. Both temperature and hypoxia tolerance varied significantly among families and there was a significant positive correlation between critical maximum temperature (CTmax) and hypoxia tolerance, supporting the OCLTT concept. At the organ and cellular levels, we also discovered support for the OCLTT concept as relative ventricle mass (RVM) and cardiac myoglobin (Mb) levels both correlated positively with CTmax (R(2)=0.21, P<0.001 and R(2)=0.17, P=0.003, respectively). A large RVM has previously been shown to be associated with high cardiac output, which might facilitate tissue oxygen supply during elevated oxygen demand at high temperatures, while Mb facilitates the oxygen transfer from the blood to tissues, especially during hypoxia. The data presented here demonstrate for the first time that RVM and Mb are correlated with increased upper temperature tolerance in fish. High phenotypic variation between families and greater similarity among full- and half-siblings suggests that there is substantial standing genetic variation in thermal and hypoxia tolerance, which could respond to selection either in aquaculture or in response to anthropogenic stressors such as global climate change.

Investigations into valorisation of trade wastewater for biomethane production.

Biogas production from wastewater is one way that industrial sites can work towards the UN Sustainable Development Goals, while recovering a valuable resource. The objective of this study was to investigate the suitability of data collected by municipal wastewater service providers as a method of classifying and screening waste producers as potential sites for biogas resource recovery by anaerobic digestion. Industrial wastewater samples, including raw effluent and treated waste ready for discharge, were examined, and biomethane potential assays performed. Results of chemical analysis and lab-scale digestion were compared to historical service provider data, and patterns were observed. Biomethane yields of up to 357 mL/gVS and 287mL/gVS were achieved from raw and treated effluent respectively. Digestion at the top four prospects could produce over 4690 GJ of methane and save $47,000 in natural gas costs, offsetting 490 tonnes of CO2 equivalent annually. These streams, from logistics, waste management, food and animal product businesses, combined high levels of degradable substrates and low levels of inhibitory components. While it is unlikely that this type of screening program can be completely accurate, certain parameters, including high sodium concentration, are applicable for discounting the potential for biogas production. This knowledge can be a valuable tool in the process of selecting sites for future resource recovery, therefore increasing the uptake of these processes, resulting in economic, environmental, and climate change mitigation benefits.