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1.
Nature ; 582(7811): 294-297, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32523118

RESUMO

The primary structural component of the bacterial cell wall is peptidoglycan, which is essential for viability and the synthesis of which is the target for crucial antibiotics1,2. Peptidoglycan is a single macromolecule made of glycan chains crosslinked by peptide side branches that surrounds the cell, acting as a constraint to internal turgor1,3. In Gram-positive bacteria, peptidoglycan is tens of nanometres thick, generally portrayed as a homogeneous structure that provides mechanical strength4-6. Here we applied atomic force microscopy7-12 to interrogate the morphologically distinct Staphylococcus aureus and Bacillus subtilis species, using live cells and purified peptidoglycan. The mature surface of live cells is characterized by a landscape of large (up to 60 nm in diameter), deep (up to 23 nm) pores constituting a disordered gel of peptidoglycan. The inner peptidoglycan surface, consisting of more nascent material, is much denser, with glycan strand spacing typically less than 7 nm. The inner surface architecture is location dependent; the cylinder of B. subtilis has dense circumferential orientation, while in S. aureus and division septa for both species, peptidoglycan is dense but randomly oriented. Revealing the molecular architecture of the cell envelope frames our understanding of its mechanical properties and role as the environmental interface13,14, providing information complementary to traditional structural biology approaches.


Assuntos
Bacillus subtilis/citologia , Bacillus subtilis/ultraestrutura , Parede Celular/química , Parede Celular/ultraestrutura , Microscopia de Força Atômica , Staphylococcus aureus/citologia , Staphylococcus aureus/ultraestrutura , Bacillus subtilis/química , Viabilidade Microbiana , Peptidoglicano/química , Peptidoglicano/isolamento & purificação , Peptidoglicano/ultraestrutura , Staphylococcus aureus/química
2.
J Fish Biol ; 86(1): 1-15, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25307290

RESUMO

Life-history variables for three incidentally captured species of seahorse (Kellogg's seahorse Hippocampus kelloggi, the hedgehog seahorse Hippocampus spinosissimus and the three-spot seahorse Hippocampus trimaculatus) were established using specimens obtained from 33 fisheries landing sites in Peninsular Malaysia. When samples were pooled by species across the peninsula, sex ratios were not significantly different from unity, and height and mass relationships were significant for all species. For two of these species, height at physical maturity (HM ) was smaller than the height at which reproductive activity (HR ) commenced: H. spinosissimus (HM = 99·6 mm, HR = 123·2 mm) and H. trimaculatus (HM = 90·5 mm, HR = 121·8 mm). For H. kelloggi, HM could not be estimated as all individuals were physically mature, while HR = 167·4 mm. It appears that all three Hippocampus spp. were, on average, caught before reproducing; height at 50% capture (HC ) was ≥HM but ≤HR . The results from this study probe the effectiveness of assessment techniques for data-poor fisheries that rely heavily on estimates of length at maturity, especially if maturity is poorly defined. Findings also question the sustainability of H. trimaculatus catches in the south-west region of Peninsular Malaysia, where landed specimens had a notably smaller mean height (86·2 mm) and markedly skewed sex ratio (6% males) compared with samples from the south-east and north-west of the peninsula.


Assuntos
Pesqueiros , Smegmamorpha/fisiologia , Animais , Tamanho Corporal , Conservação dos Recursos Naturais , Feminino , Estágios do Ciclo de Vida , Malásia , Masculino , Dinâmica Populacional , Razão de Masculinidade
3.
J Fish Biol ; 78(6): 1681-724, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21651523

RESUMO

This article analyses the pressures on seahorses and explores conservation responses. It focuses on seahorses (Hippocampus spp.) but also considers pipefishes and seadragons, especially where they can fill gaps in seahorse knowledge. The charisma of many syngnathids can make them good flagship species for threats and solutions in marine conservation. The article combines a synthesis of published literature with new data on the trade in seahorses for traditional medicine, aquarium display and curiosities. Most traded seahorses come from trawl by-catch, although seahorses are also targeted. The total extraction is large, tens of millions of animals annually, and unsustainable. A first review of the effect of habitat change on syngnathids raises many questions, while suggesting that some species may cope better than others. The combination of pressures means that many species of syngnathid are now included in the IUCN Red List of Threatened Species or national equivalents. In addition, seahorse exports from 175 countries are limited to sustainable levels under the Convention on International Trade in Endangered Species (CITES) of Wild Fauna and Flora. Possible conservation measures include marine protected areas, fisheries management, select aquaculture ventures, trade regulation, improved governance (particularly) and consumer engagement.


Assuntos
Conservação dos Recursos Naturais , Pesqueiros , Smegmamorpha , Animais , Comércio , Ecossistema
4.
J Exp Med ; 188(2): 305-15, 1998 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-9670043

RESUMO

The incidence of septic shock caused by gram-positive bacteria has risen markedly in the last few years. It is largely unclear how gram-positive bacteria (which do not contain endotoxin) cause shock and multiple organ failure. We have discovered recently that two cell wall fragments of the pathogenic gram-positive bacterium Staphylococcus aureus, lipoteichoic acid (LTA) and peptidoglycan (PepG), synergize to cause the induction of nitric oxide (NO) formation, shock, and organ injury in the rat. We report here that a specific fragment of PepG, N-acetylglucosamine-beta-[1--> 4]-N-acetylmuramyl-L-alanine-D-isoglutamine, is the moiety within the PepG polymer responsible for the synergism with LTA (or the cytokine interferon gamma) to induce NO formation in the murine macrophage cell line J774.2. However, this moiety is also present in the PepG of the nonpathogenic bacterium Bacillus subtilis. We have discovered subsequently that S. aureus LTA synergizes with PepG from either bacterium to cause enhanced NO formation, shock, and organ injury in the rat, whereas the LTA from B. subtilis does not synergize with PepG of either bacterium. Thus, we propose that the structure of LTA determines the ability of a particular bacterium to cause shock and multiple organ failure (pathogenicity), while PepG acts to amplify any response induced by LTA.


Assuntos
Lipopolissacarídeos/química , Lipopolissacarídeos/farmacologia , Macrófagos/metabolismo , Macrófagos/microbiologia , Óxido Nítrico Sintase/biossíntese , Peptidoglicano/química , Peptidoglicano/farmacologia , Infecções Estafilocócicas/metabolismo , Staphylococcus aureus/metabolismo , Staphylococcus aureus/patogenicidade , Ácidos Teicoicos/química , Ácidos Teicoicos/farmacologia , Animais , Bacillus subtilis/metabolismo , Linhagem Celular , Indução Enzimática/efeitos dos fármacos , Camundongos , Insuficiência de Múltiplos Órgãos/metabolismo , Insuficiência de Múltiplos Órgãos/microbiologia , Fragmentos de Peptídeos/farmacologia , Ratos , Choque Séptico/metabolismo , Choque Séptico/microbiologia , Infecções Estafilocócicas/microbiologia
5.
J Fish Biol ; 76(10): 2434-54, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20557601

RESUMO

The current study presents information on size distributions, size at recruitment to the fishery, size at maturity and patterns of reproduction for several small benthic fishes caught as by-catch in the southern Gulf of California (Mexico) shrimp trawl fishery: sand perch Diplectrum spp., lumptail searobin Prionotus stephanophrys, bigscale goatfish Pseudupeneus grandisquamis and silver stardrum Stellifer illecebrosus. Pseudupeneus grandisquamis, P. stephanophrys and S. illecebrosus populations were all sexually dimorphic in size. Total-length (L(T))-based analyses did not provide reliable information on survival and growth. The majority of sampled P. grandisquamis and S. illecebrosus were caught before reproductive maturity, whereas the majority of Diplectrum spp. and almost all P. stephanophrys were mature when caught. L(T) at 50% gear retention (L(Tc), mm) v. 50% maturity (L(Tm), mm): Diplectrum spp. 124.53 v. 131.43; P. grandisquamis 90.98 v. 135.20; S. illecebrosus 82.55 v. 137.30. L(Tc) for P. stephanophrys was 104.73, but L(Tm) could not be modelled for this species as almost all captured individuals were mature. Diplectrum spp., P. grandisquamis and S. illecebrosus were indeterminate spawners, whereas P. stephanophrys appeared to be a determinate spawner. Sex ratios were equal for each of the gonochoristic species. In general, the gonado-somatic index (I(G)) increased with increasing L(T) for all except P. stephanophrys, where I(G) decreased with increasing L(T) for both males and females. Mature individuals of all taxa were found throughout the sampling period (September to March), and I(G) increased with sample day for all except females of P. grandisquamis. The current data suggest the potential for fishery effects on sampled populations of P. grandisquamis and S. illecebrosus.


Assuntos
Pesqueiros , Perciformes/fisiologia , Animais , Tamanho Corporal , Feminino , Masculino , México , Dinâmica Populacional , Análise de Regressão , Reprodução , Razão de Masculinidade
6.
Clin Exp Immunol ; 157(2): 216-24, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19604261

RESUMO

Recent developments in the study of host-pathogen interactions have fundamentally altered our understanding of the nature of Staphylococcus aureus infection, and previously held tenets regarding the role of the granulocyte are being cast aside. Novel mechanisms of pathogenesis are becoming evident, revealing the extent to which S. aureus can evade neutrophil responses successfully by resisting microbicides, surviving intracellularly and subverting cell death pathways. Developing a detailed understanding of these complex strategies is especially relevant in light of increasing staphylococcal virulence and antibiotic resistance, and the knowledge that dysfunctional neutrophil responses contribute materially to poor host outcomes. Unravelling the biology of these interactions is a challenging task, but one which may yield new strategies to address this, as yet, defiant organism.


Assuntos
Pele/microbiologia , Infecções Estafilocócicas/imunologia , Staphylococcus aureus/fisiologia , Abscesso/imunologia , Morte Celular , Interações Hospedeiro-Patógeno , Humanos , Hospedeiro Imunocomprometido , Contagem de Leucócitos , Neutrófilos/imunologia , Infecções Estafilocócicas/tratamento farmacológico , Infecções Estafilocócicas/microbiologia , Virulência
7.
Ultramicroscopy ; 109(7): 775-80, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19268460

RESUMO

Coccoid cells of the bacterial species Staphylococcus aureus have been mechanically trapped in lithographically patterned substrates and imaged under growth media using atomic force microscopy (AFM) in order to follow cellular processes. The cells are not perturbed as there is no chemical linkage to the surface. Confinement effects are minimized compared to trapping the cells in porous membranes or soft gels. S. aureus cells have been imaged undergoing cell division whilst trapped in the patterned substrates. Entrapment in lithographically patterned substrates provides a novel way for anchoring bacterial cells so that the AFM tip will not push the cells off during imaging, whilst allowing the bacteria to continue with cellular processes.


Assuntos
Células Imobilizadas , Microscopia de Força Atômica/métodos , Staphylococcus aureus/ultraestrutura , Divisão Celular , Staphylococcus aureus/fisiologia , Propriedades de Superfície
8.
Lancet Respir Med ; 6(2): 97-106, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29373235

RESUMO

BACKGROUND: Children of preschool age often have episodes of virus-associated wheeze, and research assessing efficacy of corticosteroids for paediatric wheeze exacerbations is inconclusive. METHODS: This non-inferiority, randomised, double-blind, placebo-controlled trial was to compare the efficacy of placebo versus oral prednisolone in children aged 24-72 months presenting with virus-associated wheeze at the paediatric emergency department of Princess Margaret Hospital in Perth, WA, Australia. Eligible participants were randomly assigned (1:1) using a computer-generated random number program to receive placebo or prednisolone (1 mg/kg per day) for 3 days. The primary outcome was total length of stay in hospital until ready for discharge. Following an analysis to test the hypothesis that placebo is non-inferior to prednisolone, a post-hoc superiority analysis was done to test the hypothesis that prednisolone was superior to placebo. A non-inferiority margin of 10% was used to establish non-inferiority. Efficacy analyses were on a modified intention-to-treat basis, whereby patients were excluded from the final efficacy analysis if consent was withdrawn, two doses of study drug were vomited, or paperwork was lost. All participants were included in safety analyses. This study is registered with the Australian and New Zealand Clinical Trials Registry, number ACTRN12612000394842. FINDINGS: Between June 11, 2012, and June 10, 2015, we screened 3727 patients for eligibility. 624 eligible patients were randomly assigned to treatment, and 605 patients were included in the modified intention-to-treat analysis (300 patients from the placebo group, 305 patients from the prednisolone group). The median length of stay until ready for discharge was longer in the placebo group (540 min [IQR 124-971]) than in the prednisolone group (370 min [121-709]); placebo was inferior to prednisolone. In the post-hoc superiority analysis of 605 patients, the unadjusted ratio of geometric mean for length of stay was 0·79 (95% CI 0·64-0·97; p=0·0227) for the prednisolone group relative to the placebo group. No serious adverse events were reported during the study or follow-up period. One child in the placebo group had a non-specific maculopapular rash, which resolved spontaneously. Two children (one from each group) were reported to be hyperactive during follow-up assessments. INTERPRETATION: Oral prednisolone had a clear benefit over placebo at reducing the length of stay in children presenting to a paediatric emergency department with virus-associated wheeze and was well tolerated. FUNDING: Western Australian Department of Health.


Assuntos
Glucocorticoides/uso terapêutico , Prednisolona/uso terapêutico , Sons Respiratórios/efeitos dos fármacos , Sons Respiratórios/etiologia , Infecções Respiratórias/complicações , Viroses/complicações , Administração Oral , Austrália , Pré-Escolar , Método Duplo-Cego , Feminino , Humanos , Tempo de Internação/estatística & dados numéricos , Masculino , Estudos Prospectivos , Infecções Respiratórias/virologia , Resultado do Tratamento
9.
J Clin Invest ; 99(7): 1614-27, 1997 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-9120005

RESUMO

To analyze the human kappa chain repertoire and the influences that shape it, a single cell PCR technique was used that amplified Vkappa Jkappa rearrangements from genomic DNA of individual human B cells. More than 350 productive and 250 nonproductive Vkappa Jkappa rearrangements were sequenced. Nearly every functional Vkappa gene segment was used in rearrangements, although six Vkappa gene segments, A27, L2, L6, L12a, A17, and O12/O2 were used preferentially. Of these, A27, L2, L6, and L12a showed evidence of positive selection based on the variable region and not CDR3, whereas A17 was overrepresented because of a rearrangement bias based on molecular mechanisms. Utilization of Jkappa segments was also nonrandom, with Jkappa1 and Jkappa2 being overrepresented and Jkappa3 and Jkappa5 underrepresented in the nonproductive repertoire, implying a molecular basis for the bias. In B cells with two Vkappa Jkappa rearrangements, marked differences were noted in the Vkappa segments used for the initial and subsequent rearrangements, whereas Jkappa segments were used comparably. Junctional diversity was generated by n-nucleotide addition in 60% and by exonuclease trimming in 75% of the Vkappa Jkappa rearrangements analyzed. Despite this large degree of diversity, a strict CDR3 length was maintained in both productive and nonproductive rearrangements. More than 23% of the productive rearrangements, but only 7% of the nonproductive rearrangements contained somatic hypermutations. Mutations were significantly more frequent in Vkappa sequences derived from CD5- as compared with CD5+ B cells. These results document that the gene segment utilization within the Vkappa repertoire is biased by both intrinsic molecular processes as well as selection after light chain expression. Moreover, IgM+ memory cells with highly mutated kappa genes reside within the CD5- but not the CD5+ B cell compartment.


Assuntos
Linfócitos B/imunologia , Imunoglobulina M/análise , Cadeias kappa de Imunoglobulina/genética , Antígenos CD5/análise , Rearranjo Gênico , Humanos , Região de Junção de Imunoglobulinas/genética , Região Variável de Imunoglobulina/genética , Memória Imunológica , Mutação
10.
J Clin Invest ; 102(4): 688-94, 1998 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-9710436

RESUMO

To determine whether receptor editing of Vkappa genes was involved in the pathogenesis of systemic lupus erythematosus (SLE), the usage of Vkappa and Jkappa gene elements from individual peripheral CD19(+) B cells obtained from a patient with untreated SLE was examined. No differences in the Vkappa and Jkappa gene usage in the nonproductive gene repertoire of this SLE patient were noted compared with the distribution of genes found in normal adults. However, an increased usage of Jkappa5 segments, and a significant overrepresentation of the Vkappa1 and Vkappa4 families, especially the L15, O14/O4, and B3 genes characterized the productive Vkappa gene repertoire of the SLE patient. Furthermore, Jkappa5-containing Vkappa gene rearrangements in the productive but not the nonproductive repertoire manifested significantly fewer mutations compared with Vkappa genes recombined with Jkappa1-4. These data are consistent with the conclusion that receptor editing of Vkappa is much more apparent in this SLE patient than in normals and suggest that a deficiency in this means to counteract the emergence of autoimmunity is not an essential feature of SLE.


Assuntos
Rearranjo Gênico do Linfócito B , Cadeias kappa de Imunoglobulina/genética , Lúpus Eritematoso Sistêmico/genética , Análise Mutacional de DNA , Humanos , Região de Junção de Imunoglobulinas/genética , Região Variável de Imunoglobulina/genética , Recém-Nascido , Pessoa de Meia-Idade , Dados de Sequência Molecular
11.
J Clin Invest ; 99(10): 2488-501, 1997 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-9153293

RESUMO

To analyze the immunoglobulin repertoire of human IgM+ B cells and the CD5(+) and CD5(-) subsets, individual CD19(+)/ IgM+/CD5(+) or CD5(-) B cells were sorted and non-productive as well as productive VH gene rearrangements were amplified from genomic DNA and sequenced. In both subsets, the VH3 family was overrepresented largely as a result of preferential usage of a small number of specific individual family members. In the CD5(+) B cell subset, all other VH families were found at a frequency expected from random usage, whereas in the CD5(-) population, VH4 appeared to be overrepresented in the nonproductive repertoire, and also negatively selected since it was found significantly less often in the productive compared to the nonproductive repertoire; the VH1 family was significantly diminished in the productive rearrangements of CD5(-) B cells. 3-23/DP-47 was the most frequently used VH gene segment and was found significantly more often than expected from random usage in productive rearrangements of both CD5(+) and CD5(-) B cells. Evidence for selection based on the D segment and the JH gene usage was noted in CD5(+) B cells. No differences were found between the B cell subsets in CDR3 length, the number of N-nucleotides or evidence of exonuclease activity. Somatically hypermutated VHDJH rearrangements were significantly more frequent and extensive in CD5(-) compared to CD5(+) IgM+ B cells, indicating that IgM+ memory B cells were more frequent in the CD5(-) B cell population. Of note, the frequency of specific VH genes in the mutated population differed from that in the nonmutated population, suggesting that antigen stimulation imposed additional biases on the repertoire of IgM+ B cells. These results indicate that the expressed repertoire of IgM+ B cell subsets is shaped by recombinational bias, as well as selection before and after antigen exposure. Moreover, the influences on the repertoires of CD5(+) and CD5(-) B cells are significantly different, suggesting that human peripheral blood CD5(+) and CD5(-) B cells represent different B cell lineages, with similarities to murine B-1a and B-2 subsets, respectively.


Assuntos
Linfócitos B/imunologia , Antígenos CD5/sangue , Genes de Imunoglobulinas , Antígenos HLA-D/genética , Cadeias Pesadas de Imunoglobulinas/genética , Imunoglobulina M/sangue , Região Variável de Imunoglobulina/genética , Adulto , Sequência de Aminoácidos , Animais , Antígenos CD/sangue , Antígenos CD19/sangue , Subpopulações de Linfócitos B/imunologia , Rearranjo Gênico , Humanos , Masculino , Camundongos , Pessoa de Meia-Idade , Dados de Sequência Molecular , Reação em Cadeia da Polimerase
12.
Sci Immunol ; 2(8)2017 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-28386604

RESUMO

Hypoxia and bacterial infection frequently co-exist, in both acute and chronic clinical settings, and typically result in adverse clinical outcomes. To ameliorate this morbidity, we investigated the interaction between hypoxia and the host response. In the context of acute hypoxia, both S. aureus and S. pneumoniae infections rapidly induced progressive neutrophil mediated morbidity and mortality, with associated hypothermia and cardiovascular compromise. Preconditioning animals through longer exposures to hypoxia, prior to infection, prevented these pathophysiological responses and profoundly dampened the transcriptome of circulating leukocytes. Specifically, perturbation of HIF pathway and glycolysis genes by hypoxic preconditioning was associated with reduced leukocyte glucose utilisation, resulting in systemic rescue from a global negative energy state and myocardial protection. Thus we demonstrate that hypoxia preconditions the innate immune response and determines survival outcomes following bacterial infection through suppression of HIF-1α and neutrophil metabolism. The therapeutic implications of this work are that in the context of systemic or tissue hypoxia therapies that target the host response could improve infection associated morbidity and mortality.

13.
Trends Microbiol ; 7(11): 458-62, 1999 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-10542426

RESUMO

Staphylococcus aureus is a major human pathogen of increasing importance as a result of the spread of antibiotic resistance. It causes a wide range of diseases and survives outside the host by virtue of its adaptability and resistance to environmental stress. Several cellular components involved in Staphylococcus aureus stress resistance have begun to be characterized.


Assuntos
Infecções Estafilocócicas/microbiologia , Staphylococcus aureus/fisiologia , Staphylococcus aureus/patogenicidade , Adaptação Fisiológica , Meio Ambiente , Humanos , Virulência
14.
Biochim Biophys Acta ; 1083(3): 230-4, 1991 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-1646638

RESUMO

We have evaluated the effect of native low-density lipoproteins (LDL) on the production of leukotriene B4 (LTB4), a potent inflammatory and chemotactic factor, by human monocyte-derived macrophages. The capacity of LDL (d, 1.024-1.050 g/ml) to increase LTB4 secretion was dose-dependent with an optimal response at 100 micrograms LDL protein/ml, representing an approx. 7.5-fold stimulation over basal levels at 10 days of culture; the half-maximal response occurred at 20 micrograms/ml. The effect of LDL on LTB4 production was rapid (within 15 min) and was maintained for at least 21 h. The generation of LTB4 in response to LDL was partially inhibited (approx. 70% inhibition) by EDTA (5 mM) and by a monoclonal antibody (IgG-C7; 160 micrograms/ml) directed against the binding site of the cellular LDL receptor. In addition, the effects of native LDL and acetylated LDL were additive. These findings suggest that the specific interaction of LDL with its high affinity receptor represents a major component in the stimulation of the production of LTB4 by human monocyte-derived macrophages.


Assuntos
Leucotrieno B4/biossíntese , Lipoproteínas LDL/farmacologia , Macrófagos/metabolismo , Anticorpos Monoclonais/farmacologia , Células Cultivadas , Relação Dose-Resposta a Droga , Ácido Edético/farmacologia , Humanos , Lipoproteínas LDL/antagonistas & inibidores , Macrófagos/efeitos dos fármacos , Receptores de LDL/efeitos dos fármacos , Estimulação Química
15.
J Mol Biol ; 313(1): 111-22, 2001 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-11601850

RESUMO

In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. The autoinducer-2 production protein LuxS, is involved in a novel quorum-sensing system and is thought to catalyse the degradation of S-ribosylhomocysteine to homocysteine and the autoinducer molecule 4,5-dihydroxy-2,3-pentadione. The crystal structure of Bacillus subtilis LuxS has been determined at 1.2 A resolution, together with the binary complexes of LuxS with S-ribosylhomocysteine and homocysteine to 2.2 and 2.3 A resolution, respectively. These structures show that LuxS is a homodimer with an apparently novel fold based on an eight-stranded beta-barrel, flanked by six alpha-helices. Each active site contains a zinc ion coordinated by the conserved residues His54, His58 and Cys126, and includes residues from both subunits. S-ribosylhomocysteine binds in a deep pocket with the ribose moiety adjacent to the enzyme-bound zinc ion. Access to the active site appears to be restricted and possibly requires conformational changes in the protein involving the movement of residues 125-129 and those at the N terminus. The structure contains an oxidised cysteine residue in the active site whose role in the biological process of LuxS has not been determined. The autoinducer-2 signalling pathway has been linked to aspects of bacterial virulence and pathogenicity. The structural data on LuxS will provide opportunities for targeting this enzyme for the rational design of new antibiotics.


Assuntos
Bacillus subtilis/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Sequência de Aminoácidos , Sítios de Ligação , Liases de Carbono-Enxofre , Cristalografia por Raios X , Homocisteína/análogos & derivados , Homocisteína/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Estrutura Quaternária de Proteína , Estrutura Secundária de Proteína , Selenometionina/metabolismo , Alinhamento de Sequência , Zinco/metabolismo
16.
Microbes Infect ; 3(8): 633-7, 2001 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-11445449

RESUMO

Many of the genes encoding the virulence factors for Staphylococcus aureus are controlled by the accessory gene regulator (agr) and staphylococcal accessory regulator (sar). This regulation may be affected by the environment in which the organisms are grown. In the majority of ecosystems, bacteria grow attached to surfaces and form biofilms. We used S. aureus strains containing mutations inactivating agr and sar to determine whether the presence of these genes influences the attachment of the bacterium to a surface. We also used strains harbouring reporter constructs of the agr and sar operons to determine their expression in biofilms. The attachment study results showed that the sarA mutant strain adhered better to glass than did the agrA mutant or the wild type. There was an increased adherence to fibronectin-coated glass for all three strains compared to glass. Thus, these adhesion studies demonstrate that agr and sar have pleiotrophic effects on the surface expression of molecules responsible for binding to different substrata. In the biofilms higher numbers of bacteria and the greatest expression were observed at the base, but there were no observable differences between the reporter constructs. Expression of the agr and sar reporter fusions was significantly higher in the deepest layers of the biofilms where the greatest numbers of bacteria were also observed, perhaps as one might expect for genes that are regulated in a cell density dependent fashion.


Assuntos
Aderência Bacteriana/fisiologia , Proteínas de Bactérias/metabolismo , Biofilmes/crescimento & desenvolvimento , Staphylococcus aureus/fisiologia , Transativadores , Fatores de Transcrição/metabolismo , Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica , Vidro , Mutação , Staphylococcus aureus/genética , Fatores de Transcrição/genética
17.
J Med Chem ; 37(1): 113-24, 1994 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-8289184

RESUMO

The investigation of the SAR of 5-lipoxygenase (5-LO) inhibition of a series of racemic (methoxyalkyl)thiazoles, exemplified by compound 7 (ZM-211965), has led to other active, racemic derivatives in which the thiazole moiety has been replaced by an ester or an ether. Furthermore, the cyclization of the ethers has given a highly potent, but achiral series, the methoxytetrahydropyrans (methoxyTHP), exemplified by 41 (ZD-2138) presently under clinical evaluation. More recent structural investigations have led to chiral members of this series bearing a 2-methyl substituent in the tetrahydropyran ring. The potential for enantioselectivity in each of the three noncyclic, racemic series led us to synthesize the pure enantiomers ((R)-13c, (S)-13c, (R)-13d, (S)-13d, (R)-15c, (S)-15c, (R)-16b, (S)-16b, and (R)-16c, (S)-16c) and to determine their absolute configuration. The biological activity of each enantiomer was evaluated in intact mouse macrophages and in human whole blood and showed that, of these three series, only the thiazole is enantioselective and that the active configuration is (S) (being between 2 and 3 orders of magnitude more potent than the (R) isomer in mouse macrophages). Conformational analysis using systematic conformational searching, molecular mechanics, and semiempirical methods has been performed on the chiral compounds, and the results have helped to explain the enantioselectivity in the thiazole series and to define the role of the substituents around the quaternary carbon. Simultaneously in the achiral tetrahydropyran (THP) series, the critical role of the methoxy substituent has been examined through the synthesis of the ethyl (24b), ester (22b), methoxymethyl ether (26), hydroxymethyl (25b), aldehyde (27b), ketone (29b), hydroxy (31b), and methyl (23b) analogues and by analysis of their biological and conformational properties. This approach, complemented by the results of a similar study carried out on the Z and E isomers of the chiral ethyl-2-methylTHP derivative (39b and 40b), has also led to the characterization of the active conformation in this series. The whole study has identified new elements to clarify the 3D structural requirements of the 5-LO active site.


Assuntos
Inibidores de Lipoxigenase , Naftalenos/química , Piranos/química , Quinolonas/química , Tiazóis/química , Animais , Araquidonato 5-Lipoxigenase/química , Sítios de Ligação , Simulação por Computador , Humanos , Macrófagos/metabolismo , Camundongos , Modelos Moleculares , Conformação Molecular , Albumina Sérica/metabolismo , Relação Estrutura-Atividade
18.
J Med Chem ; 34(7): 2176-86, 1991 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-1648621

RESUMO

(Methoxyalkyl)thiazoles are novel 5-lipoxygenase (5-LPO) inhibitors that are neither redox agents nor iron chelators. Consideration of a hypothetical model of the enzyme active site led to this series which is exemplified by 1-[3-(naphth-2-ylmethoxy)phenyl]-1-(thiazol-2-yl)propy l methyl ether (2d, ICI211965). 2d inhibits cell-free guinea pig 5-LPO activity, LTC4 synthesis in plasma free mouse macrophages, and LTB4 synthesis in rat and human blood (IC50s 0.1 microM, 8 nM, 0.5 microM, and 0.4 microM, respectively) but does not inhibit the synthesis of cyclooxygenase products at concentrations up to 50 microM in macrophages and 100 microM in blood. 2d is orally active in rat (ex vivo ED50 10 mg/kg in blood taken in 1 h after dosing). SAR studies show that high in vitro potency requires methoxy, thiazolyl, and naphthyl groups and depends critically on the substitution pattern. (Methoxyalkyl)thiazoles are chiral. Resolution of 1-methoxy-6-(naphth-2-ylmethoxy)-1-(thiazol-2-yl)indan (2j, ICI216800) shows that (+)-2j is 50-150-fold more potent than (-)-2j in in vitro assays. Thus, (methoxyalkyl)thiazoles are a new series of orally active, selective 5-LPO inhibitors and represent the first class of inhibitors in which inhibition is mediated by specific, enantioselective interactions with the enzyme.


Assuntos
Inibidores Enzimáticos/síntese química , Inibidores de Lipoxigenase , Naftalenos/síntese química , Tiazóis/síntese química , Administração Oral , Animais , Fenômenos Químicos , Química , Cobaias , Humanos , Leucotrieno B4/biossíntese , Camundongos , Naftalenos/farmacologia , Ratos , Relação Estrutura-Atividade , Tiazóis/farmacologia , Tromboxano B2/biossíntese
19.
J Med Chem ; 42(23): 4890-908, 1999 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-10579851

RESUMO

Tumor necrosis factor alpha convertase (TACE), the enzyme responsible for the processing of pro-TNFalpha to TNFalpha, has been reported to be a metalloproteinase closely related to matrix metalloproteinases (MMPs). Current inhibitors of TACE such as succinate-based hydroxamic acids exemplified by Marimastat (TACE IC(50): 3.8 nM; blood IC(50): 7 microM) and BB1101 (TACE IC(50): 0.2 nM; blood IC(50): 2.3 microM) suffer from modest potency in blood and poor in vivo properties. The introduction of new bulky alpha-substituents into these succinate-based hydroxamic acids was studied. Substituents such as thioethers, sulfonamides, and ethers showed improved potency against TACE when compared with Marimastat. Although this improvement did not translate into better blood potency for thioether or ether substituents, the sulfonamide series exhibited improved potency both against TACE and in blood when compared with Marimastat. Optimization of this sulfonamide series has culminated in the identification of heterocyclic bicyclic sulfonamides such as 3t (TACE IC(50): 0.57 nM; blood IC(50): 0.28 microM).


Assuntos
Ácidos Hidroxâmicos/síntese química , Metaloendopeptidases/antagonistas & inibidores , Inibidores de Proteases/síntese química , Quinazolinas/síntese química , Succinatos/síntese química , Fator de Necrose Tumoral alfa/antagonistas & inibidores , Proteínas ADAM , Proteína ADAM17 , Administração Oral , Animais , Callithrix , Humanos , Ácidos Hidroxâmicos/química , Ácidos Hidroxâmicos/farmacocinética , Ácidos Hidroxâmicos/farmacologia , Metaloendopeptidases/sangue , Inibidores de Proteases/química , Inibidores de Proteases/farmacocinética , Inibidores de Proteases/farmacologia , Quinazolinas/química , Quinazolinas/farmacocinética , Quinazolinas/farmacologia , Succinatos/química , Succinatos/farmacocinética , Succinatos/farmacologia , Fator de Necrose Tumoral alfa/metabolismo
20.
J Med Chem ; 35(14): 2600-9, 1992 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-1321908

RESUMO

Investigation of the SAR of the lead (methoxyalkyl)thiazole 1-[3-(naphth-2-ylmethoxy)phenyl]-1-thiazol-2-ylprop yl methyl ether (1, ICI 211965) led to the methoxytetrahydropyrans, a new series of 5-lipoxygenase (5-LPO) inhibitors exemplified by the parent compound 4-[3-(naphth-2-ylmethoxy)phenyl]-4- methoxy-3,4,5,6-tetrahydro-2H-pyran (4f). In vitro 4f inhibited leukotriene C4 (LTC4) synthesis in zymosan-stimulated plasma-free mouse macrophages and LTB4 synthesis in A-23187-stimulated human whole blood (IC50s 0.5 nM and 0.07 microM, respectively). In the rat 4f inhibited LTB4 synthesis in blood ex vivo and in zymosan-inflamed air pouch exudate with an ED50 3 h after oral dosing of 10 mg/kg in each system. In seeking more potent orally active compounds, strategies were explored in congeners of 4f for reducing lipophilicity without sacrificing potency. For example, replacement of 2-naphthyl of 4f by various aza- and oxoheterocycles afforded compounds in which log P is reduced by 1.7-2.3 units while potency in human whole blood in vitro was maintained or enhanced relative to 4f. In addition, the oxoheterocyclic replacements provided compounds with improved oral potency and the preferred compound from this group is 6-[[3-fluoro-5-(4-methoxy-3,4,5,6-tetrahydro-2H-pyran-4- yl)phenoxy]methyl]-1-methylquinol-2-one (4y). In the in vitro systems, 4y inhibited LT formation with IC50s in mouse macrophages and human whole blood of 3 nM and 0.02 microM, respectively. 4y did not inhibit the synthesis of cyclooxygenase (CO) products at concentrations up to 500 microM in human blood, a selectivity for 5-LPO over CO of greater than 20,000-fold. In the rat 4y inhibited the formation of LTB4 in blood ex vivo and in inflammatory exudate with ED50s 3 h after oral dosing of 0.9 and 0.3 mg/kg, respectively. 4y was more potent in vitro in human whole blood and in rat blood ex vivo at 3 h than either the 5-LPO inhibitor A-64077 or the FLAP antagonist MK-886. Based on these data 4y (ICI D2138) has been entered into development as an orally active, selective 5-LPO inhibitor for clinical evaluation in inflammatory conditions in which LTs are believed to play a role.


Assuntos
Inibidores de Lipoxigenase/farmacologia , Piranos/farmacologia , Administração Oral , Animais , Calcimicina/farmacologia , Interações Medicamentosas , Eicosanoides/metabolismo , Humanos , Leucotrieno B4/antagonistas & inibidores , Leucotrieno B4/biossíntese , Inibidores de Lipoxigenase/administração & dosagem , Inibidores de Lipoxigenase/química , Macrófagos/efeitos dos fármacos , Macrófagos/metabolismo , Camundongos , Naftalenos/química , Naftalenos/farmacologia , Cavidade Peritoneal/citologia , Piranos/administração & dosagem , Piranos/química , Quinolonas/química , Quinolonas/farmacologia , Ratos , Relação Estrutura-Atividade , Tiazóis/química , Tiazóis/farmacologia
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