Detalhe da pesquisa
1.
Learning from the unknown: exploring the range of bacterial functionality.
Nucleic Acids Res
; 51(19): 10162-10175, 2023 10 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-37739408
2.
GOThresher: a program to remove annotation biases from protein function annotation datasets.
Bioinformatics
; 39(1)2023 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36688705
3.
Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia.
Bioinformatics
; 38(Suppl 1): i19-i27, 2022 06 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-35758800
4.
Deploying MMEJ using MENdel in precision gene editing applications for gene therapy and functional genomics.
Nucleic Acids Res
; 49(1): 67-78, 2021 01 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-33305328
5.
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).
PLoS Comput Biol
; 17(10): e1009463, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34710081
6.
Finding orthologous gene blocks in bacteria: the computational hardness of the problem and novel methods to address it.
Bioinformatics
; 36(Suppl_2): i668-i674, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381825
7.
Identifying antimicrobial peptides using word embedding with deep recurrent neural networks.
Bioinformatics
; 35(12): 2009-2016, 2019 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30418485
8.
Tracing the ancestry of operons in bacteria.
Bioinformatics
; 35(17): 2998-3004, 2019 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30689726
9.
Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains.
Drug Dev Res
; 81(1): 43-51, 2020 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-31483516
10.
Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.
Hum Mutat
; 40(9): 1530-1545, 2019 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31301157
11.
Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning.
PLoS Comput Biol
; 14(7): e1006337, 2018 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-30059508
12.
Chikungunya Virus in Febrile Humans and Aedes aegypti Mosquitoes, Yucatan, Mexico.
Emerg Infect Dis
; 22(10): 1804-7, 2016 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-27347760
13.
An event-driven approach for studying gene block evolution in bacteria.
Bioinformatics
; 31(13): 2075-83, 2015 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25717195
14.
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins.
BMC Bioinformatics
; 16: 381, 2015 Nov 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-26558535
15.
The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective.
Bioinformatics
; 30(17): i609-16, 2014 Sep 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25161254
16.
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space.
PLoS Comput Biol
; 9(5): e1003063, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-23737737
17.
EpicTope: narrating protein sequence features to identify non-disruptive epitope tagging sites.
bioRxiv
; 2024 Mar 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-38559275
18.
CAFA-evaluator: a Python tool for benchmarking ontological classification methods.
Bioinform Adv
; 4(1): vbae043, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38545087
19.
An accurate and interpretable model for antimicrobial resistance in pathogenic Escherichia coli from livestock and companion animal species.
PLoS One
; 18(8): e0290473, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37616210
20.
The field of protein function prediction as viewed by different domain scientists.
Bioinform Adv
; 2(1): vbac057, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-36699361