Detalhe da pesquisa
1.
Reconstruction Set Test (RESET): A computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error.
PLoS Comput Biol
; 20(4): e1012084, 2024 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-38683883
2.
Tissue-adjusted pathway analysis of cancer (TPAC): A novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue.
PLoS Comput Biol
; 20(1): e1011717, 2024 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-38206988
3.
CAMML with the Integration of Marker Proteins (ChIMP).
Bioinformatics
; 38(23): 5206-5213, 2022 11 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-36214642
4.
CBEA: Competitive balances for taxonomic enrichment analysis.
PLoS Comput Biol
; 18(5): e1010091, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35584140
5.
Analyzing cancer gene expression data through the lens of normal tissue-specificity.
PLoS Comput Biol
; 17(6): e1009085, 2021 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-34143767
6.
Zbtb20 Restrains CD8 T Cell Immunometabolism and Restricts Memory Differentiation and Antitumor Immunity.
J Immunol
; 205(10): 2649-2666, 2020 11 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32998985
7.
Associations between the gut microbiome and metabolome in early life.
BMC Microbiol
; 21(1): 238, 2021 08 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-34454437
8.
Pan-cancer evaluation of gene expression and somatic alteration data for cancer prognosis prediction.
BMC Cancer
; 21(1): 1053, 2021 Sep 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34563154
9.
Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models.
BMC Bioinformatics
; 21(1): 467, 2020 Oct 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33081688
10.
Comparison of pathway and gene-level models for cancer prognosis prediction.
BMC Bioinformatics
; 21(1): 76, 2020 Feb 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-32111152
11.
Computation and application of tissue-specific gene set weights.
Bioinformatics
; 34(17): 2957-2964, 2018 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29659714
12.
Gene set selection via LASSO penalized regression (SLPR).
Nucleic Acids Res
; 45(12): e114, 2017 Jul 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-28472344
13.
A multi-omics approach for identifying important pathways and genes in human cancer.
BMC Bioinformatics
; 19(1): 479, 2018 Dec 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-30541428
14.
A global test for gene-gene interactions based on random matrix theory.
Genet Epidemiol
; 40(8): 689-701, 2016 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-27386793
15.
Identifying significant gene-environment interactions using a combination of screening testing and hierarchical false discovery rate control.
Genet Epidemiol
; 40(7): 544-557, 2016 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-27578615
16.
Unsupervised gene set testing based on random matrix theory.
BMC Bioinformatics
; 17(1): 442, 2016 Nov 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27809777
17.
Spectral gene set enrichment (SGSE).
BMC Bioinformatics
; 16: 70, 2015 Mar 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-25879888
18.
Optimization of gene set annotations via entropy minimization over variable clusters (EMVC).
Bioinformatics
; 30(12): 1698-706, 2014 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-24574114
19.
A generalized eigenvector centrality for multilayer networks with inter-layer constraints on adjacent node importance.
Appl Netw Sci
; 9(1): 14, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38699246
20.
Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error.
bioRxiv
; 2023 Apr 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-37066315