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1.
Molecules ; 28(14)2023 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-37513201

RESUMO

Insects rely on carbohydrates such as starch and glycogen as an energy supply for growth of larvae and for longevity. In this sense α-amylases have essential roles under extreme conditions, e.g., during nutritional or temperature stress, thereby contributing to survival of the insect. This makes them interesting targets for combating insect pests. Drosophila melanogaster α-amylase, DMA, which belongs to the glycoside hydrolase family 13, sub family 15, has been studied from an evolutionary, biochemical, and structural point of view. Our studies revealed that the DMA enzyme is active over a broad temperature and pH range, which is in agreement with the fluctuating environmental changes with which the insect is confronted. Crystal structures disclosed a new nearly fully solvated metal ion, only coordinated to the protein via Gln263. This residue is only conserved in the subgroup of D. melanogaster and may thus contribute to the enzyme adaptive response to large temperature variations. Studies of the effect of plant inhibitors and the pseudo-tetrasaccharide inhibitor acarbose on DMA activity, allowed us to underline the important role of the so-called flexible loop on activity/inhibition, but also to suggest that the inhibition modes of the wheat inhibitors WI-1 and WI-3 on DMA, are likely different.


Assuntos
Drosophila melanogaster , alfa-Amilases , Animais , Drosophila melanogaster/metabolismo , Acarbose , Amido/química , Insetos/metabolismo
2.
Extremophiles ; 23(5): 495-506, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31147836

RESUMO

Crystal structures of phosphoglycerate kinase (PGK) from the psychrophile Pseudomonas sp. TACII 18 have been determined at high resolution by X-ray crystallography methods and compared with mesophilic, thermophilic and hyperthermophilic counterparts. PGK is a two-domain enzyme undergoing large domain movements to catalyze the production of ATP from 1,3-biphosphoglycerate and ADP. Whereas the conformational dynamics sustaining the catalytic mechanism of this hinge-bending enzyme now seems rather clear, the determinants which underlie high catalytic efficiency at low temperatures of this psychrophilic PGK were unknown. The comparison of the three-dimensional structures shows that multiple (global and local) specific adaptations have been brought about by this enzyme. Together, these reside in an overall increased flexibility of the cold-adapted PGK thereby allowing a better accessibility to the active site, but also a potentially more disordered transition state of the psychrophilic enzyme, due to the destabilization of some catalytic residues.


Assuntos
Adaptação Fisiológica , Proteínas de Bactérias/química , Temperatura Baixa , Fosfoglicerato Quinase/química , Pseudomonas/enzimologia , Simulação de Dinâmica Molecular , Domínios Proteicos
3.
J Biol Chem ; 287(47): 39642-52, 2012 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-23012371

RESUMO

The α-galactosidase AgaA from the thermophilic microorganism Geobacillus stearothermophilus has great industrial potential because it is fully active at 338 K against raffinose and can increase the yield of manufactured sucrose. AgaB has lower affinity for its natural substrates but is a powerful tool for the enzymatic synthesis of disaccharides by transglycosylation. These two enzymes have 97% identity and belong to the glycoside hydrolase (GH) family GH36 for which few structures are available. To understand the structural basis underlying the differences between these two enzymes, we determined the crystal structures of AgaA and AgaB by molecular replacement at 3.2- and 1.8 Å-resolution, respectively. We also solved a 2.8-Å structure of the AgaA(A355E) mutant, which has enzymatic properties similar to those of AgaB. We observe that residue 355 is located 20 Å away from the active site and that the A355E substitution causes structural rearrangements resulting in a significant displacement of the invariant Trp(336) at catalytic subsite -1. Hence, the active cleft of AgaA is narrowed in comparison with AgaB, and AgaA is more efficient than AgaB against its natural substrates. The structure of AgaA(A355E) complexed with 1-deoxygalactonojirimycin reveals an induced fit movement; there is a rupture of the electrostatic interaction between Glu(355) and Asn(335) and a return of Trp(336) to an optimal position for ligand stacking. The structures of two catalytic mutants of AgaA(A355E) complexed with raffinose and stachyose show that the binding interactions are stronger at subsite -1 to enable the binding of various α-galactosides.


Assuntos
Geobacillus stearothermophilus/enzimologia , Rafinose/química , alfa-Galactosidase/química , Substituição de Aminoácidos , Cristalografia por Raios X , Geobacillus stearothermophilus/genética , Mutação de Sentido Incorreto , Estrutura Terciária de Proteína , Rafinose/metabolismo , Homologia Estrutural de Proteína , Relação Estrutura-Atividade , alfa-Galactosidase/genética
4.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 2): 298-307, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23385465

RESUMO

Sucrose isomerase is an enzyme that catalyzes the production of sucrose isomers of high biotechnological and pharmaceutical interest. Owing to the complexity of the chemical synthesis of these isomers, isomaltulose and trehalulose, enzymatic conversion remains the preferred method for obtaining these products. Depending on the microbial source, the ratio of the sucrose-isomer products varies significantly. In studies aimed at understanding and explaining the underlying molecular mechanisms of these reactions, mutations obtained using a random-mutagenesis approach displayed a major hydrolytic activity. Two of these variants, R284C and F164L, of sucrose isomerase from Rhizobium sp. were therefore crystallized and their crystal structures were determined. The three-dimensional structures of these mutants allowed the identification of the molecular determinants that favour hydrolytic activity compared with transferase activity. Substantial conformational changes resulting in an active-site opening were observed, as were changes in the pattern of water molecules bordering the active-site region.


Assuntos
Proteínas de Bactérias/química , Domínio Catalítico/genética , Glucosiltransferases/química , Glucosiltransferases/genética , Mutação , Rhizobium/enzimologia , 1-Desoxinojirimicina/química , Proteínas de Bactérias/genética , Cristalografia por Raios X/métodos , Dissacarídeos/química , Glucose/química , Hidrólise , Isomaltose/análogos & derivados , Isomaltose/química , Ligantes , Distribuição Aleatória , Rhizobium/genética , Sacarose/química
5.
Appl Microbiol Biotechnol ; 97(22): 9715-26, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23463249

RESUMO

The role of residue 219 in the physicochemical properties of D-glucose isomerase from Streptomyces sp. SK strain (SKGI) was investigated by site-directed mutagenesis and structural studies. Mutants G219A, G219N, and G219F were generated and characterized. Comparative studies of their physicochemical properties with those of the wild-type enzyme highlighted that mutant G219A displayed increased specific activity and thermal stability compared to that of the wild-type enzyme, while for G219N and G219F, these properties were considerably decreased. A double mutant, SKGI F53L/G219A, displayed a higher optimal temperature and a higher catalytic efficiency than both the G219A mutant and the wild-type enzyme and showed a half-life time of about 150 min at 85 °C as compared to 50 min for wild-type SKGI. Crystal structures of SKGI wild-type and G219A enzymes were solved to 1.73 and 2.15 Å, respectively, and showed that the polypeptide chain folds into two structural domains. The larger domain consists of a (ß/α)8 unit, and the smaller domain forms a loop of α helices. Detailed analyses of the three-dimensional structures highlighted minor but important changes in the active site region as compared to that of the wild-type enzyme leading to a displacement of both metal ions, and in particular that in site M2. The structural analyses moreover revealed how the substitution of G219 by an alanine plays a crucial role in improving the thermostability of the mutant enzyme.


Assuntos
Aldose-Cetose Isomerases/genética , Aldose-Cetose Isomerases/metabolismo , Streptomyces/enzimologia , Aldose-Cetose Isomerases/química , Substituição de Aminoácidos , Domínio Catalítico , Cristalografia por Raios X , Análise Mutacional de DNA , Estabilidade Enzimática , Modelos Moleculares , Mutagênese Sítio-Dirigida , Proteínas Mutantes/química , Proteínas Mutantes/genética , Proteínas Mutantes/metabolismo , Conformação Proteica , Dobramento de Proteína , Estabilidade Proteica , Estrutura Terciária de Proteína , Streptomyces/genética , Temperatura
6.
Antonie Van Leeuwenhoek ; 103(4): 701-12, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23180374

RESUMO

The gene encoding the ß-galactosidase from the dairy Lactococcus lactis IL1403 strain was cloned, sequenced and overexpressed in Escherichia coli. The purified enzyme has a tetrameric arrangement composed of four identical 120 kDa subunits. Biochemical characterization showed that it is optimally active within a wide range of temperatures from 15 to 55 °C and of pH from 6.0 to 7.5. For its maximal activity this enzyme requires only 0.8 mM Fe(2+) and 1.6 mM Mg(2+). Purified protein displayed a high catalytic efficiency of 102 s(-1) mM(-1) for lactose. The enzyme stability was increased by immobilization mainly at low pH (from 4.0 to 5.5) and high temperatures (55 and 60 °C). The bioconversion of lactose using the L. lactis ß-galactosidase allows the production of lactose with a high bioconversion rate (98 %) within a wide range of pH and temperature.


Assuntos
Lactococcus lactis/enzimologia , Lactose/metabolismo , beta-Galactosidase/metabolismo , Clonagem Molecular , Ativadores de Enzimas , Estabilidade Enzimática , Enzimas Imobilizadas/química , Enzimas Imobilizadas/metabolismo , Escherichia coli/genética , Concentração de Íons de Hidrogênio , Hidrólise , Lactococcus lactis/genética , Peso Molecular , Multimerização Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Temperatura , beta-Galactosidase/química , beta-Galactosidase/genética , beta-Galactosidase/isolamento & purificação
7.
J Ind Microbiol Biotechnol ; 39(4): 537-46, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22139345

RESUMO

The role of two amino acid residues linked to the two catalytic histidines His54 and His220 in kinetics and physicochemical properties of the Streptomyces sp. SK glucose isomerase (SKGI) was investigated by site-directed mutagenesis and molecular modeling. Two single mutations, F53L and G219D, and a double mutation F53L/G219D was introduced into the xylA SKGI gene. The F53L mutation increases the thermostability and the catalytic efficiency and also slightly shifts the optimum pH from 6.5 to 7, but displays a profile being similar to that of the wild-type enzyme concerning the effect of various metal ions. The G219D mutant is resistant to calcium inhibition retaining about 80% of its residual activity in 10 mM Ca²âº instead of 10% for the wild-type. This variant is activated by Mn²âº ions, but not Co²âº, as seen for the wild-type enzyme. It does not require the latter for its thermostability, but has its half-life time displaced from 50 to 20 min at 85°C. The double mutation F53L/G219D restores the thermostability as seen for the wild-type enzyme while maintaining the resistance to the calcium inhibition. Molecular modeling suggests that the increase in thermostability is due to new hydrophobic interactions stabilizing α2 helix and that the resistance to calcium inhibition is a result of narrowing the binding site of catalytic ion.


Assuntos
Aldose-Cetose Isomerases/genética , Mutagênese Sítio-Dirigida , Streptomyces/enzimologia , Aldose-Cetose Isomerases/química , Aldose-Cetose Isomerases/metabolismo , Sequência de Aminoácidos , Cálcio/metabolismo , Cobalto/metabolismo , Estabilidade Enzimática , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Mutação , Alinhamento de Sequência
8.
Biochem Biophys Res Commun ; 411(2): 265-70, 2011 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-21741359

RESUMO

AmyTM is a truncated mutant of the α-amylase of Bacillus stearothermophilus US100. It has been derived from the wild type amylase gene via a reading frame shift, following a tandem duplication of the mutant primer, associated to an Adenine base deletion. AmyTM was composed of 720 nucleotides encoding 240 amino acid residues out of 549 of the wild type. The AmyTM protein was devoided of the three catalytic residues but still retains catalytic activity. It is Ca-independent maltotetraose producing amylase, optimally active at pH 6 and 60°C, under monomeric or multimeric forms. AmyTM is the smallest functional truncated TIM barrel. It contains the ßαßα unit as the minimal subdomain associated to an enzymatic function. The enzymatic activity can, until now, be attributed to the presence of the whole domain B, in the structure of AmyTM. This mutant revealed, for the first time, the regeneration of a catalytic site after its abolition. This fact may be considered as the restoration of a primitive active site, which was lost in the course of evolution toward more stable domains.


Assuntos
Geobacillus stearothermophilus/enzimologia , alfa-Amilases/química , Sequência de Aminoácidos , Sequência de Bases , Geobacillus stearothermophilus/genética , Dados de Sequência Molecular , Dobramento de Proteína , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , alfa-Amilases/genética
9.
Microb Cell Fact ; 10: 96, 2011 Nov 10.
Artigo em Inglês | MEDLINE | ID: mdl-22074172

RESUMO

BACKGROUND: L-arabinose isomerases catalyse the isomerization of L-arabinose into L-ribulose at insight biological systems. At industrial scale of this enzyme is used for the bioconversion of D-galactose into D-tagatose which has many applications in pharmaceutical and agro-food industries. The isomerization reaction is thermodynamically equilibrated, and therefore the bioconversion rates is shifted towards tagatose when the temperature is increased. Moreover, to prevent secondary reactions it will be of interest to operate at low pH. The profitability of this D-tagatose production process is mainly related to the use of lactose as cheaper raw material. In many dairy products it will be interesting to produce D-tagatose during storage. This requires an efficient L-arabinose isomerase acting at low temperature and pH values. RESULTS: The gene encoding the L-arabinose isomerase from Shewanella sp. ANA-3 was cloned and overexpressed in Escherichia coli. The purified protein has a tetrameric arrangement composed by four identical 55 kDa subunits. The biochemical characterization of this enzyme showed that it was distinguishable by its maximal activity at low temperatures comprised between 15-35°C. Interestingly, this biocatalyst preserves more than 85% of its activity in a broad range of temperatures from 4.0 to 45°C. Shewanella sp. ANA-3 L-arabinose isomerase was also optimally active at pH 5.5-6.5 and maintained over 80% of its activity at large pH values from 4.0 to 8.5. Furthermore, this enzyme exhibited a weak requirement for metallic ions for its activity evaluated at 0.6 mM Mn2+. Stability studies showed that this protein is highly stable mainly at low temperature and pH values. Remarkably, T268K mutation clearly enhances the enzyme stability at low pH values. Use of this L-arabinose isomerase for D-tagatose production allows the achievement of attractive bioconversion rates of 16% at 4°C and 34% at 35°C. CONCLUSIONS: Here we reported the purification and the biochemical characterization of the novel Shewanella sp. ANA-3 L-arabinose isomerase. Determination of the biochemical properties demonstrated that this enzyme was highly active at low temperatures. The generated T268K mutant displays an increase of the enzyme stability essentially at low pH. These features seem to be very attractive for the bioconversion of D-galactose into D-tagatose at low temperature which is very interesting from industrial point of view.


Assuntos
Aldose-Cetose Isomerases/química , Proteínas de Bactérias/química , Shewanella/enzimologia , Ácidos/metabolismo , Aldose-Cetose Isomerases/genética , Aldose-Cetose Isomerases/isolamento & purificação , Aldose-Cetose Isomerases/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Clonagem Molecular , Temperatura Baixa , Estabilidade Enzimática , Hexoses/metabolismo , Cinética , Dados de Sequência Molecular , Mutação , Alinhamento de Sequência , Shewanella/química , Shewanella/genética , Especificidade por Substrato
10.
J Biol Chem ; 284(44): 30257-63, 2009 Oct 30.
Artigo em Inglês | MEDLINE | ID: mdl-19759007

RESUMO

Unlike other antiapoptotic members of the Bcl-2 family, Bfl-1 does not contain a well defined C-terminal transmembrane domain, and whether the C-terminal tail of Bfl-1 functions as a membrane anchor is not yet clearly established. The molecular modeling study of the full-length Bfl-1 performed within this work suggests that Bfl-1 may co-exist in two distinct conformational states: one in which its C-terminal helix alpha9 is inserted in the hydrophobic groove formed by the BH1-3 domains of Bfl-1 and one with its C terminus. Parallel analysis of the subcellular localization of Bfl-1 indicates that even if Bfl-1 may co-exist in two distinct conformational states, most of the endogenous protein is tightly associated with the mitochondria by its C terminus in both healthy and apoptotic peripheral blood lymphocytes as well as in malignant B cell lines. However, the helix alpha9 of Bfl-1, and therefore the binding of Bfl-1 to mitochondria, is not absolutely required for the antiapoptotic activity of Bfl-1. A particular feature of Bfl-1 is the amphipathic character of its C-terminal helix alpha9. Our data clearly indicate that this property of helix alpha9 is required for the anchorage of Bfl-1 to the mitochondria but also regulates the antiapoptotic function Bfl-1.


Assuntos
Proteínas Reguladoras de Apoptose , Mitocôndrias/metabolismo , Proteínas Proto-Oncogênicas c-bcl-2/fisiologia , Aminoácidos , Animais , Apoptose , Linfócitos B/patologia , Linhagem Celular , Linhagem Celular Tumoral , Humanos , Linfócitos/citologia , Camundongos , Antígenos de Histocompatibilidade Menor , Modelos Moleculares , Ligação Proteica , Conformação Proteica , Proteínas Proto-Oncogênicas c-bcl-2/química , Proteínas Proto-Oncogênicas c-bcl-2/metabolismo
11.
Proteins ; 78(6): 1441-56, 2010 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-20034112

RESUMO

The 101-residue long Tat protein of primary isolate 133 of the human immunodeficiency virus type 1 (HIV-1), wt-Tat(133) displays a high transactivation activity in vitro, whereas the mutant thereof, STLA-Tat(133), a vaccine candidate for HIV-1, has none. These two proteins were chemically synthesized and their biological activity was validated. Their structural properties were characterized using circular dichroism (CD), fluorescence emission, gel filtration, dynamic light scattering, and small angle X-ray scattering (SAXS) techniques. SAXS studies revealed that both proteins were extended and belong to the family of intrinsically unstructured proteins. CD measurements showed that wt-Tat(133) or STLA-Tat(133) underwent limited structural rearrangements when complexed with specific fragments of antibodies. Crystallization trials have been performed on the two forms, assuming that the Tat(133) proteins might have a better propensity to fold in supersaturated conditions, and small crystals have been obtained. These results suggest that biologically active Tat protein is natively unfolded and requires only a limited gain of structure for its function.


Assuntos
HIV-1/química , Proteínas Mutantes/química , Produtos do Gene tat do Vírus da Imunodeficiência Humana/química , Vacinas contra a AIDS/química , Vacinas contra a AIDS/genética , Vacinas contra a AIDS/imunologia , Sequência de Aminoácidos , Cromatografia em Gel , Dicroísmo Circular , Cristalografia por Raios X , HIV-1/genética , HIV-1/isolamento & purificação , Interações Hidrofóbicas e Hidrofílicas , Fragmentos de Imunoglobulinas , Luz , Metilaminas , Dados de Sequência Molecular , Dobramento de Proteína , Espalhamento de Radiação , Espalhamento a Baixo Ângulo , Espectrofotometria Ultravioleta , Trifluoretanol , Água , Produtos do Gene tat do Vírus da Imunodeficiência Humana/genética , Produtos do Gene tat do Vírus da Imunodeficiência Humana/imunologia , Produtos do Gene tat do Vírus da Imunodeficiência Humana/metabolismo
12.
Biochem Biophys Res Commun ; 385(1): 78-83, 2009 Jul 17.
Artigo em Inglês | MEDLINE | ID: mdl-19422796

RESUMO

To provide insight into the potential role of a loop in domain B of several bacterial alpha-amylases, molecular and structural investigation of Bacillus stearothermophilus alpha-amylase (Amy US100) was used as a model. Combination deletion mutants of G(213), I(214) and G(215), described as a loop-forming on the surface bacterial amylases, were subjected to biochemical and structural investigation. Thermoactivity, thermostability as well calcium requirement were studied for each mutant. Thus, deletion of one residue differently affects only the thermostability. Shortening the loop by deletion of G(213)-I(214) or I(214)-G(215) improved the thermostability and reduces calcium requirement. However, the deletion of three residues has a negative effect on thermostability and reduces the optimal temperature by 17 degrees C. The structural investigation showed that stabilizing deletions contribute to reinforce the architecture of domain B and the active site conformation. The deletion of three residues reduces the flexibility of this region and abolishes a denser hydrogen bond network.


Assuntos
Geobacillus stearothermophilus/enzimologia , alfa-Amilases/química , Cálcio/química , Quelantes/química , Ácido Edético/química , Estabilidade Enzimática/genética , Temperatura Alta , Estrutura Terciária de Proteína/genética , Deleção de Sequência , alfa-Amilases/genética
13.
Biotechnol Bioeng ; 102(2): 380-9, 2009 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-18951544

RESUMO

AmyUS100DeltaIG is a variant of the most thermoactive and thermostable maltohexaose forming alpha-amylase produced by Geobacillus stearothermophilus sp.US100. This enzyme which was designed to improve the thermostability of the wild-type enzyme has acquired a very high resistance to chelator agents. According to modeling structural studies and with the aim of enhancing its resistance towards chemical oxidation, a mutant (AmyUS100DeltaIG/M197A) was created by substituting methionine 197 to alanine. The catalytic proprieties of the resulting mutant show alterations in the specific activity and the profile of starch hydrolysis. Interestingly, AmyUS100DeltaIG/M197A displayed the highest resistance to oxidation compared to the AmyUS100DeltaIG and to Termamyl300, the well-known commercial amylase used in detergent. Further, performance of the engineered alpha-amylase was estimated in the presence of commonly used detergent compounds and a wide range of commercial detergent (liquid and solid). These studies indicated a high compatibility and performance of AmyUS100DeltaIG/M197A, suggesting its potential application in detergent industry.


Assuntos
Bacillus/enzimologia , Detergentes/química , Engenharia de Proteínas , alfa-Amilases/química , alfa-Amilases/genética , Alanina/química , Alanina/genética , Substituição de Aminoácidos , Catálise , Estabilidade Enzimática/genética , Escherichia coli/genética , Temperatura Alta , Metionina/química , Metionina/genética , Mutagênese , Oligossacarídeos/biossíntese , Oxirredução , Conformação Proteica , Relação Estrutura-Atividade , alfa-Amilases/biossíntese
14.
FEBS Lett ; 582(17): 2567-71, 2008 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-18588886

RESUMO

Certain starch hydrolases possess secondary carbohydrate binding sites outside of the active site, suggesting that multi-site substrate interactions are functionally significant. In barley alpha-amylase both Tyr380, situated on a remote non-catalytic domain, and Tyr105 in subsite -6 of the active site cleft are principal carbohydrate binding residues. The dual active site/secondary site mutants Y105A/Y380A and Y105A/Y380M show that each of Tyr380 and Tyr105 is important, albeit not essential for binding, degradation, and multiple attack on polysaccharides, while Tyr105 predominates in oligosaccharide hydrolysis. Additional delicate structure/function relationships of the secondary site are uncovered using Y380A/H395A, Y380A, and H395A AMY1 mutants.


Assuntos
Hordeum/enzimologia , Proteínas de Plantas/química , Amido/química , alfa-Amilases/química , beta-Ciclodextrinas/química , Sítios de Ligação , Domínio Catalítico , Cristalografia por Raios X , Mutação , Proteínas de Plantas/genética , Tirosina/química , Tirosina/genética , alfa-Amilases/genética
15.
Biochem J ; 407(2): 293-302, 2007 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-17635108

RESUMO

The psychrophilic cellulase, Cel5G, from the Antarctic bacterium Pseudoalteromonas haloplanktis is composed of a catalytic module (CM) joined to a carbohydrate-binding module (CBM) by an unusually long, extended and flexible linker region (LR) containing three loops closed by three disulfide bridges. To evaluate the possible role of this region in cold adaptation, the LR was sequentially shortened by protein engineering, successively deleting one and two loops of this module, whereas the last disulfide bridge was also suppressed by replacing the last two cysteine residue by two alanine residues. The kinetic and thermodynamic properties of the mutants were compared with those of the full-length enzyme, and also with those of the cold-adapted CM alone and with those of the homologous mesophilic enzyme, Cel5A, from Erwinia chrysanthemi. The thermostability of the mutated enzymes as well as their relative flexibility were evaluated by differential scanning calorimetry and fluorescence quenching respectively. The topology of the structure of the shortest mutant was determined by SAXS (small-angle X-ray scattering). The data indicate that the sequential shortening of the LR induces a regular decrease of the specific activity towards macromolecular substrates, reduces the relative flexibility and concomitantly increases the thermostability of the shortened enzymes. This demonstrates that the long LR of the full-length enzyme favours the catalytic efficiency at low and moderate temperatures by rendering the structure not only less compact, but also less stable, and plays a crucial role in the adaptation to cold of this cellulolytic enzyme.


Assuntos
Celulase/química , Celulase/fisiologia , Temperatura Baixa , Pseudoalteromonas/enzimologia , Aclimatação , Catálise , Celulase/genética , Estabilidade Enzimática , Mutação , Conformação Proteica
16.
FEBS J ; 274(19): 5055-67, 2007 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-17803687

RESUMO

Some starch-degrading enzymes accommodate carbohydrates at sites situated at a certain distance from the active site. In the crystal structure of barley alpha-amylase 1, oligosaccharide is thus bound to the 'sugar tongs' site. This site on the non-catalytic domain C in the C-terminal part of the molecule contains a key residue, Tyr380, which has numerous contacts with the oligosaccharide. The mutant enzymes Y380A and Y380M failed to bind to beta-cyclodextrin-Sepharose, a starch-mimic resin used for alpha-amylase affinity purification. The K(d) for beta-cyclodextrin binding to Y380A and Y380M was 1.4 mm compared to 0.20-0.25 mm for the wild-type, S378P and S378T enzymes. The substitution in the S378P enzyme mimics Pro376 in the barley alpha-amylase 2 isozyme, which in spite of its conserved Tyr378 did not bind oligosaccharide at the 'sugar tongs' in the structure. Crystal structures of both wild-type and S378P enzymes, but not the Y380A enzyme, showed binding of the pseudotetrasaccharide acarbose at the 'sugar tongs' site. The 'sugar tongs' site also contributed importantly to the adsorption to starch granules, as Kd = 0.47 mg.mL(-1) for the wild-type enzyme increased to 5.9 mg.mL(-1) for Y380A, which moreover catalyzed the release of soluble oligosaccharides from starch granules with only 10% of the wild-type activity. beta-cyclodextrin both inhibited binding to and suppressed activity on starch granules for wild-type and S378P enzymes, but did not affect these properties of Y380A, reflecting the functional role of Tyr380. In addition, the Y380A enzyme hydrolyzed amylose with reduced multiple attack, emphasizing that the 'sugar tongs' participates in multivalent binding of polysaccharide substrates.


Assuntos
Hordeum/enzimologia , alfa-Amilases/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Domínio Catalítico , Cristalografia por Raios X , Primers do DNA , Hidrólise , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Ressonância de Plasmônio de Superfície , alfa-Amilases/química , alfa-Amilases/genética , beta-Ciclodextrinas/metabolismo
17.
Biochem J ; 394(Pt 1): 51-6, 2006 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-16197365

RESUMO

The implications of Asn315 and Val450 in the atypical starch hydrolysis profile of Bacillus stearothermophilus Amy (a-amylase) US100 have been suggested previously [Ben Ali, Mhiri, Mezghani and Bejar (2001) Enzyme Microb. Tech. 28, 537-542]. In order to confirm this hypothesis, three mutants were generated. Of these two have a single mutation, N315D or V450G, whereas the third contains both mutations. Analysis of the starch breakdown-profile of these three mutants, as well as of the wild-type, allowed us to conclude that each single mutation induces a small variation in the hydrolysis product. However, the major end product produced by the double mutant shifts from maltopentaose/maltohexaose to maltose/maltotriose, confirming the involvement of these two residues in starch hydrolysis. The superimposition of AmyUS100 model with that of Bacillus licheniformis shows in AmyUS100 an additional loop containing residues Ile214 and Gly215. Remarkably, the deletion of these two residues increases the half-life at 100 degrees C from 15 min to approx. 70 min. Moreover, this engineered amylase requires less calcium, 25 p.p.m. instead of 100 p.p.m., to reach maximal thermostability.


Assuntos
Amilases/metabolismo , Geobacillus stearothermophilus/classificação , Geobacillus stearothermophilus/enzimologia , Temperatura Alta , Oligossacarídeos/biossíntese , Amido/metabolismo , Substituição de Aminoácidos , Cálcio/metabolismo , Estabilidade Enzimática , Hidrólise , Modelos Moleculares , Mutação , Oligossacarídeos/metabolismo , Estrutura Terciária de Proteína
18.
Biochem J ; 395(2): 345-53, 2006 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-16405427

RESUMO

BmrA from Bacillus subtilis is a half-size ABC (ATP-binding cassette) transporter involved in multidrug resistance. Although its supramolecular organization has been investigated after reconstitution in a lipid bilayer environment, and shows a dimeric and possibly a tetrameric form, the precise quaternary structure in a detergent-solubilized state has never been addressed. In the present study, BmrA was purified from Escherichia coli membranes using an optimized purification protocol and different detergents. Furthermore, the ATPase activity of BmrA and the quantity of bound lipids and detergent were determined, and the oligomeric state was analysed using SEC (size-exclusion chromatography) and analytical ultracentrifugation. The activity and the quaternary structure of BmrA appeared to be strongly influenced by the type and concentration of the detergent used. SEC data showed that BmrA could be purified in a functional form in 0.05 and 0.01% DDM (n-dodecyl-beta-D-maltoside) and was homogeneous and monodisperse with an R(s) (Stokes radius) of 5.6 nm that is compatible with a dimer structure. Sedimentation-velocity and equilibrium experiments unequivocally supported that BmrA purified in DDM is a dimer and excluded the presence of other oligomeric states. These observations, which are discussed in relation to results obtained in proteoliposomes, also constitute an important first step towards crystallographic studies of BmrA structure.


Assuntos
Transportadores de Cassetes de Ligação de ATP/química , Bacillus subtilis/química , Detergentes/farmacologia , Transportadores de Cassetes de Ligação de ATP/metabolismo , Cromatografia em Gel , Dimerização , Glucosídeos/farmacologia , Fosfolipídeos/metabolismo , Ligação Proteica/efeitos dos fármacos , Estrutura Quaternária de Proteína/efeitos dos fármacos , Solubilidade/efeitos dos fármacos , Ultracentrifugação
19.
J Mol Biol ; 348(5): 1211-24, 2005 May 20.
Artigo em Inglês | MEDLINE | ID: mdl-15854656

RESUMO

Pseudoalteromonas haloplanktis is a psychrophilic Gram-negative bacterium isolated in Antarctica, that lives on organic remains of algae. This bacterium converts the cellulose, highly constitutive of algae, into an immediate nutritive form by biodegrading this biopolymer. To understand the mechanisms of cold adaptation of its enzymatic components, we studied the structural properties of an endoglucanase, Cel5G, by complementary methods, X-ray crystallography and small angle X-ray scattering. Using X-ray crystallography, we determined the structure of the catalytic core module of this family 5 endoglucanase, at 1.4A resolution in its native form and at 1.6A in the cellobiose-bound form. The catalytic module of Cel5G presents the (beta/alpha)(8)-barrel structure typical of clan GH-A of glycoside hydrolase families. The structural comparison of the catalytic core of Cel5G with the mesophilic catalytic core of Cel5A from Erwinia chrysanthemi revealed modifications at the atomic level leading to higher flexibility and thermolability, which might account for the higher activity of Cel5G at low temperatures. Using small angle X-ray scattering we further explored the structure at the entire enzyme level. We analyzed the dimensions, shape, and conformation of Cel5G full length in solution and especially of the linker between the catalytic module and the cellulose-binding module. The results showed that the linker is unstructured, and unusually long and flexible, a peculiarity that distinguishes it from its mesophilic counterpart. Loops formed at the base by disulfide bridges presumably add constraints to stabilize the most extended conformations. These results suggest that the linker plays a major role in cold adaptation of this psychrophilic enzyme, allowing steric optimization of substrate accessibility.


Assuntos
Proteínas de Bactérias/química , Celulase/química , Pseudoalteromonas/enzimologia , Sequência de Aminoácidos , Sítios de Ligação , Catálise , Celobiose/metabolismo , Biologia Computacional , Cristalografia por Raios X , Dados de Sequência Molecular , Estrutura Molecular , Conformação Proteica , Espalhamento de Radiação , Eletricidade Estática , Raios X
20.
Artigo em Inglês | MEDLINE | ID: mdl-16511267

RESUMO

Palatinose (isomaltulose, alpha-D-glucosylpyranosyl-1,6-D-fructofuranose), a nutritional and acariogenic reducing sugar, is industrially obtained from sucrose by using immobilized cells of Protaminobacter rubrum that produce the sucrose isomerase SmuA. The isomerization of sucrose catalyzed by this enzyme also results in the formation of trehalulose (alpha-D-glucosylpyranosyl-1,1-D-fructofuranose) in smaller amounts and glucose, fructose and eventually isomaltose as by-products, which lower the yield of the reaction and complicate the recovery of palatinose. The determination of the three-dimensional structure of SmuA will provide a basis for rational protein-engineering studies in order to optimize the industrial production of palatinose. A recombinant form of the 67.3 kDa SmuA enzyme has been crystallized in the native state by the vapour-diffusion method. Crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 61.6, b = 81.4, c = 135.6 A, and diffract to 1.95 A resolution on a synchrotron-radiation source.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Gammaproteobacteria/enzimologia , Glucosiltransferases/genética , Glucosiltransferases/isolamento & purificação , Proteínas de Bactérias/biossíntese , Cristalização , Cristalografia por Raios X/métodos , Dissacarídeos/química , Ativação Enzimática , Escherichia coli/genética , Gammaproteobacteria/genética , Glucosiltransferases/biossíntese , Isomaltose/análogos & derivados , Isomaltose/biossíntese , Isomaltose/síntese química , Sacarose/química
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