Analysis of molecular ligand functionalization process in nano-molecular electronic devices containing densely packed nano-particle functionalization shells.

Molecular electronic devices based on few and single-molecules have the advantage that the electronic signature of the device is directly dependent on the electronic structure of the molecules as well as of the electrode-molecule junction. In this work, we use a two-step approach to synthesise functionalized nanomolecular electronic devices (nanoMoED). In first step we apply an organic solvent-based gold nanoparticle (AuNP) synthesis method to form either a 1-dodecanethiol or a mixed 1-dodecanethiol/ω-tetraphenyl ether substituted 1-dodecanethiol ligand shell. The functionalization of these AuNPs is tuned in a second step by a ligand functionalization process where biphenyldithiol (BPDT) molecules are introduced as bridging ligands into the shell of the AuNPs. From subsequent structural analysis and electrical measurements, we could observe a successful molecular functionalization in nanoMoED devices as well as we could deduce that differences in electrical properties between two different device types are related to the differences in the molecular functionalization process for the two different AuNPs synthesized in first step. The same devices yielded successful NO2gas sensing. This opens the pathway for a simplified synthesis/fabrication of molecular electronic devices with application potential.

Transition metal silicide surface grafting by multiple functional groups and green optimization by mechanochemistry.

Chromium disilicide (CrSi2) particles were synthesized by using an arc melting furnace followed by mechanical milling. XRD and DLS analyses show that aggregates of around 3 µm containing about 10 nm sized crystallites were obtained. These aggregates were functionalized in solution by coupling agents with different anchoring groups (silane, phosphonic acid, alkene and thiol) in order to disperse them into an organic polymer. Dodecene was used to modify the CrSi2 surface during mechano-synthesis in a grinding bowl with quite little solvent quantity and the optimization step allowed the aggregate size to be reduced to 500 nm. A thermoelectric composite was then made of alkene CrSi2 grafted samples and poly(p-phénylène-2,6-benzobisoxazole). This study opens the route for new surface grafting of intermetallic silicides for applications linked to electronics and/or energy.

Photomodulation of DNA-Templated Supramolecular Assemblies.

A new type of DNA ligand that contains a phosphate-binding group and a photoresponsive azobenzene moiety is reported. When the azobenzene is in trans configuration, the ligand binds to the minor groove of a double-stranded DNA, whereas it partially desorbs upon trans-cis isomerisation with light. The ability to photoswitch the ligand upon interaction with DNA is evidenced by (chir)optical signatures, and deciphered by the differences of binding geometry, stability, and dynamics of the DNA/ligand complexes for the two isomers. We exploit these properties to photomodulate DNA-templated self-assembly, through the incorporation of another π-stacking DNA ligand, which together with the photoresponsive ligand form mixed supramolecular complexes along DNA. Our study demonstrates that well-designed photoresponsive DNA binders can be used to modulate multicomponent supramolecular DNA assemblies.

Low loss optical waveguiding in large single crystals of a thiophene-based oligomer.

Active optical waveguides based on functional small organic molecules in micro/nano regime have attracted great interest for their potential applications in high speed miniaturized photonic integrations. Here, we report on the active waveguiding properties of millimeter sized single crystals of a newly synthesized thiophene-based oligomer. These large crystals exhibit low optical loss compared to other organic nanostructures, and optical losses depend on the emission energy. Moreover, we find that the coupling of photoluminescence to waveguide modes is very efficient, typically greater than 40%. These features indicate that such perfect single crystals with a low density of defects and extremely smooth surfaces exhibit low propagation loss, which makes them good candidates for the design and the fabrication of novel organic optical fibers and lasers.

Generating long supramolecular pathways with a continuous density of states by physically linking conjugated molecules via their end groups.

Self-assembly of conjugated 2,5-dialkoxy-phenylene-thienylene-based oligomers on epitaxial monolayer graphene was studied in ultrahigh vacuum by low-temperature scanning tunneling microscopy (STM). The formation of long one-dimensional (1D) supramolecular chain-like structures has been observed, associated to a physical linking of their ends which involved the rotation of the end thiophene rings in order to allow π-π stacking of these end-groups. dI/dV maps taken at an energy corresponding to the excited states showed a continuous electronic density of states, which tentatively suggests that within such molecular chains conjugation of electrons is preserved even across physically linked molecules. Thus, in a self-organization process conjugation may be extended by appropriately adapting conformations of neighboring molecules. Our STM results on such self-organized end-linked molecules potentially represent a direct visualization of J-aggregates.

Two-photon-triggered drug delivery in cancer cells using nanoimpellers.

A therapy of cancer cells: Two-photon-triggered camptothecin delivery with nanoimpellers was studied in MCF-7 breast cancer cells. A fluorophore with a high two-photon absorption cross-section was first incorporated in the nanoimpellers. Fluorescence resonance energy transfer (FRET) from the fluorophore to the azobenzene moiety was demonstrated.

Synthesis of planar five-connected nodal ligands.

Synthetic routes to a penta(4-pyridyl)cyclopentadienyl ligand are explored. The most successful route uses a palladium-catalysed pentapyridation of di(tert-butyl)phosphinoferrocene by using a procedure developed by Hartwig. The same method allows the synthesis of cyclopentadiene ligands substituted with 4-benzaldehydes or 4-phenylthiols. The pyridine ligands are formally five-connected nodes that may be linked by linear coordination metals to give closed spherical complexes of composition [(metal)(30)(ligand)(12)] as shown by molecular modelling. Experiment shows that the ligand complexes copper(I) and silver(I) with the expected 1:2.5 stoichiometry, and the (1)H NMR spectrum of the resulting product shows the ligands to be equivalent. NMR diffusion and light-scattering measurements support the formation of a species with a hydrodynamic radius of the order of 15 A, in agreement with the modelling studies. The resulting complex would be topologically identical to the C(60) fullerene structure.

Large-scale synthesis of alkyne-linked tripodal porphyrins via palladium-mediated coupling conditions.

Suzuki and Sonogashira couplings have been used in short and efficient sequences to give access to a new family of porphyrin trimers on a practical scale.

Dynamic synthesis of a macrocycle containing a porphyrin and an electron donor.

New macrocycles incorporating a porphyrin and a [small pi] electron-rich aromatic were prepared from a dynamic disulfide library. The outcome could be influenced by use of templates.

Inclusion of C60 into an adjustable porphyrin dimer generated by dynamic disulfide chemistry.

A new, highly flexible porphyrin dimer was isolated in preparative scale from a dynamic disulfide library; this receptor adjusts to fit guests with a wide range of steric requirements and, whilst C60 proved to be an unsuitable template for this library, a new C60-porphyrin complex was isolated and characterised.

Spontaneous assembly of silylethane-thiol derivatives on Au(111): a chemically robust thiol protecting group as the precursor for the direct formation of aromatic gold thiolate monolayers.

Self-assembled monolayers (SAMs) on gold were obtained by the direct absorption of a fully conjugated phenylenethienylene derivative () presenting robust silylethane-thiol protecting groups as anchoring agents. The thiol deprotection and SAM formation have been evidenced by quartz crystal microbalance (QCM) measurements and X-ray photoelectron spectroscopy (XPS), and have been compared to the SAM obtained from its thioacetate analog (5). The chemically robust silylethane-thiol protecting group appeared as a surprisingly effective anchoring agent for the preparation of aromatic SAMs on Au(111), suitable for subsequent post-functionalization.

Insertion of Helium and Molecular Hydrogen Through the Orifice of an Open Fullerene.

A "molecular surgery" approach has been used to create an opening within a fullerene cage that is large enough to allow atoms and small molecules to pass through. The thermodynamics for the insertion of He and H2 into the open fullerene (left and right pictures, respectively) as well as their escape have been studied by NMR spectroscopy and theoretical methods.

Theoretical study of the geometrical and electronic structures and thermochemistry of spherophanes.

A set of supramolecular cage-structures--spherophanes--was studied at the density functional B3LYP level. Full geometrical structure optimisations were made with 6-31G and 6-31G(d) basis sets followed by frequency calculations, and electronic energies were evaluated at B3LYP/6-31++G(d,p). Three different symmetries were considered: C1, Ci, and Oh. It was found that the bonds between the benzene rings are very long to allow pi-electron delocalisation between them. These spherophanes show portal openings of 2.596 A in Spher1, 4.000 A in Meth2, 3.659 A in Oxa3, and 4.412 A in Thia4. From the point of view of potential host-guest interaction studies, it should also be noted that the atoms nearest to the centre of the cavities are carbons bonded to X groups. These supramolecules seem to exhibit relatively large gap HOMO-LUMO: 2.89 eV(Spher1), 5.26 eV(Meth2), 5.73 eV(Oxa3), and 4.82 eV(Thia4). The calculated Delta H degrees (f) (298.15 K) values at B3LYP/6-31G(d) are (in kcal mol(-1)) 750.98, 229.78, -10.97, and 482.49 for Spher1, Meth2, Oxa3, and Thia4, respectively. Using homodesmotic reactions, relative to Spher1, the spherophanes Meth2, Oxa3, and Thia4 are less strained by -399.13 kcal mol(-1), -390.40 kcal mol(-1), and -411.38 kcal mol(-1), respectively. Their infrared and (13)C NMR calculated spectra are reported.

Structures and solution dynamics of pseudorotaxanes mediated by alkali-metal cations.

Kinetic stability studies of a series of pseudorotaxanes formed from electron-rich crown ethers (hosts 1 and 2) and naphthalene diimide (guest A) in the presence of alkali salt templates MX (where M+ = Li+ and Na+, and X- = Cl-, Br-, I-, NO3- and CF3SO3-) were performed by 1H NMR. The switching between the (bound) host 1 and its linkage isomer host 2 (free) was monitored in solution in the presence and absence of alkali salts, to establish the relative thermodynamic stabilities in the series. We also report here six new crystal structures, for pseudorotaxanes of type: [1.A], [M2.1.A]2+ and [M2.2.A]2+. Their solution-phase structures are in good agreement with the solid-state structures determined by X-ray crystallography.

Approaches to open fullerenes: synthesis and kinetic stability of diels-alder adducts of substituted isobenzofurans and C60.

We have examined the reactions of 1,3-disubstituted isobenzofurans with the fullerene C60 in the context of an approach to open a large orifice on the fullerene framework. A variety of substituted isobenzofurans (6a-h), generated from the reaction of 1,4-substituted 1,4-epoxynaphthalenes 3a-h with 3,6-bis(2-pyridyl)-1,2,4,5-tetrazine (4a) or 1,2,4,5-tetrazine (4b), were added to C60 to afford the Diels-Alder adducts 7a-h. The thermal stability of these adducts toward retro-Diels-Alder fragmentation differs greatly in solution from that in the solid state. In solution, the relatively facile retro-Diels-Alder fragmentation of monoadducts 7a and 7c, to give C60 and the free isobenzofurans 6a and 6c, have rate constants (and activation barriers) of k=9.29x10(-5) s-1 at 70 degrees C (Ea=32.6 kcal mol-1) and k=1.36x10(-4) s-1 at 40 degrees C (Ea=33.7 kcal mol-1), respectively, indicating that the addition of isobenzofurans to C60 is readily reversible at those temperatures. In the solid state, thermogravimetric analysis of adduct 7a indicates that its decomposition occurs only within the temperature range of 220-300 degrees C. As a result, these compounds can be stored at room temperature in the solid state for several weeks without significant decomposition but have to be handled within several hours in solution.

Approaches to open fullerenes: synthesis and thermal stability of cis-1 bis(isobenzofuran) Diels-Alder adducts of C60.

In a quest to form wider openings within the cage of the fullerene C60 through controlled bond-breaking reactions, we have examined the double saturation of adjacent C=C bonds within a six-membered ring of C60. We have investigated the double Diels-Alder cycloaddition of two tethered isobenzofurans to the fullerene C60. We obtained cis-1 adducts in good yields after reacting the methylene- or quinoxaline-tethered bis(isobenzofuran) precursors 2a-k with parent 3,6-dihydro-1,2,4,5-tetrazine (3b). The X-ray structure of the methylene-tethered bis(isobenzofuran)-C60 adduct 4b has been obtained; four-eclipsed substituents are held rigidly by the bicyclic addends. The cis-1 bis(isobenzofuran) bisadducts 4b and 4e-j are kinetically far more stable toward thermal retro-Diels-Alder fragmentation than are mono(isobenzofuran) adducts of C60, in solution and in the solid state as determined by 1H NMR spectroscopy or thermogravimetric analysis. A methodology for the reversible solubilization of other fullerene derivatives based on this work is also presented.

Amplification of acetylcholine-binding catenanes from dynamic combinatorial libraries.

Directed chemical synthesis can produce a vast range of molecular structures, but the intended product must be known at the outset. In contrast, evolution in nature can lead to efficient receptors and catalysts whose structures defy prediction. To access such unpredictable structures, we prepared dynamic combinatorial libraries in which reversibly binding building blocks assemble around a receptor target. We selected for an acetylcholine receptor by adding the neurotransmitter to solutions of dipeptide hydrazones [proline-phenylalanine or proline-(cyclohexyl)alanine], which reversibly combine through hydrazone linkages. At thermodynamic equilibrium, the dominant receptor structure was an elaborate [2]-catenane consisting of two interlocked macrocyclic trimers. This complex receptor with a 100 nM affinity for acetylcholine could be isolated on a preparative scale in 67% yield.

Switchable neutral bistable rotaxanes.

Two switchable neutral bistable [2]rotaxanes have been synthesized, and their chemically induced mechanical switching has been studied in solution by 1H NMR spectroscopy. One of the rotaxanes was prepared by a thermodynamically controlled slippage mechanism, while the other rotaxane was obtained by a dynamic covalent chemistry protocol involving the assembly of its dumbbell component by olefin metathesis. The recognition sites present in the rod section of the dumbbell component, namely, naphthodiimide (NpI) and pyromellitic diimide (PmI) residues, were chosen in the knowledge that the ring component, 1,5-dinaphtho[38]crown-10 (1/5DNP38C10), will bind preferentially to the NpI site. However, upon introduction of Li+ ions into the solution, a 1:2 complex is formed between the PmI site, encircled by the 1/5DNP38C10 ring and two Li+ ions. Since this complex is more stable overall than the binding between the 1/5DNP38C10 ring and the NpI site, the ring component moves from the NpI site to the PmI one. This mechanical movement can be reversed by adding an excess of [12]crown-4 to the solution to act as a sequestering agent for the Li+ ions.