Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 82
Filtrar
1.
Photochem Photobiol Sci ; 22(4): 809-824, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-36527588

RESUMO

The blue-light hazard (BLH) has raised concerns with the increasing applications of white light-emitting diodes (LEDs). Many researchers believed that the shorter wavelength or more light components generally resulted in more severe retinal damage. In this study, based on the conventional phosphor-coated white LED, we added azure (484 nm), cyan (511 nm), and red (664 nm) light to fabricate the low-hazard light source. The low-hazard light sources and conventional white LED illuminated 68 Sprague-Dawley (SD) rats for 7 days. Before and after light exposure, we measured the retinal function, thickness of retinal layers, and fundus photographs. The expression levels of autophagy-related proteins and the activities of oxidation-related biochemical indicators were also measured to investigate the mechanisms of damaging or protecting the retina. With the same correlated color temperature (CCT), the low-hazard light source results in significantly less damage on the retinal function and photoreceptors, even if it has two times illuminance and blue-light hazard-weighted irradiance ([Formula: see text]) than conventional white LED. The results illustrated that [Formula: see text] proposed by IEC 62471 could not exactly evaluate the light damage on rats' retinas. We also figured out that more light components could result in less light damage, which provided evidence for the photobiomodulation (PBM) and spectral opponency on light damage.


Assuntos
Luz , Retina , Ratos , Animais , Ratos Sprague-Dawley
2.
Chem Rev ; 121(20): 12465-12547, 2021 10 27.
Artigo em Inglês | MEDLINE | ID: mdl-34702037

RESUMO

Heat is an abundant but often wasted source of energy. Thus, harvesting just a portion of this tremendous amount of energy holds significant promise for a more sustainable society. While traditional solid-state inorganic semiconductors have dominated the research stage on thermal-to-electrical energy conversion, carbon-based semiconductors have recently attracted a great deal of attention as potential thermoelectric materials for low-temperature energy harvesting, primarily driven by the high abundance of their atomic elements, ease of processing/manufacturing, and intrinsically low thermal conductivity. This quest for new materials has resulted in the discovery of several new kinds of thermoelectric materials and concepts capable of converting a heat flux into an electrical current by means of various types of particles transporting the electric charge: (i) electrons, (ii) ions, and (iii) redox molecules. This has contributed to expanding the applications envisaged for thermoelectric materials far beyond simple conversion of heat into electricity. This is the motivation behind this review. This work is divided in three sections. In the first section, we present the basic principle of the thermoelectric effects when the particles transporting the electric charge are electrons, ions, and redox molecules and describe the conceptual differences between the three thermodiffusion phenomena. In the second section, we review the efforts made on developing devices exploiting these three effects and give a thorough understanding of what limits their performance. In the third section, we review the state-of-the-art thermoelectric materials investigated so far and provide a comprehensive understanding of what limits charge and energy transport in each of these classes of materials.


Assuntos
Eletricidade , Temperatura
3.
J Am Chem Soc ; 143(42): 17526-17534, 2021 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-34644063

RESUMO

At the gas-liquid interface, the confined synthesis of metal-organic framework (MOF) films has been extensively developed by spreading an ultrathin oil layer on the aqueous surface as a reactor. However, this interface is susceptible to various disturbances and incapable of synthesizing large-area crystalline MOF films. Herein, we developed a polymer-assisted space-confined strategy to synthesize large-area films by blending poly(methyl methacrylate) (PMMA) into the oil layer, which improved the stability of the gas-liquid interface and the self-shrinkage of the oil layer on the water surface. Meanwhile, the as-synthesized MOFs as a quasi-solid substrate immobilized the edge of the oil layer, which maintained a large spreading area. Thanks to this synergistic effect, we synthesized the freestanding MOF-based film with a foot-level (0.66 ft) lateral dimension, which is the largest size reported so far. Besides, due to the phase separation of the two components, the MOF-PMMA composite film combined the conductivity of MOFs (1.13 S/m) with the flexibility of PMMA and exhibited excellent mechanical properties. More importantly, this strategy could be extended to the preparation of other MOFs, coordination polymers (CPs), and even inorganic material composite films, bringing light to the design and large-scale synthesis of various composite films for practical applications.

4.
Small ; 17(49): e2102155, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34309180

RESUMO

Energy shortages and greenhouse effects are two unavoidable problems that need to be solved. Photocatalytically converting CO2 into a series of valuable chemicals is considered to be an effective means of solving the above dilemmas. Among these photocatalysts, the utilization of black phosphorus for CO2 photocatalytic reduction deserves a lightspot not only for its excellent catalytic activity through different reaction routes, but also on account of the great preponderance of this relatively cheap catalyst. Herein, this review offers a summary of the recent advances in synthesis, structure, properties, and application for CO2 photocatalytic reduction. In detail, the review starts from the basic principle of CO2 photocatalytic reduction. In the following section, the synthesis, structure, and properties, as well as CO2 photocatalytic reduction process of black phosphorus-based photocatalyst are discussed. In addition, some possible influencing factors and reaction mechanism are also summarized. Finally, a summary and the possible future perspectives of black phosphorus-based photocatalyst for CO2 reduction are established.

5.
Opt Express ; 29(9): 13219-13230, 2021 Apr 26.
Artigo em Inglês | MEDLINE | ID: mdl-33985061

RESUMO

Micro-LEDs can work under an extremely high injection level and are widely used in high-brightness micro-displays and visible light communication. With the increase of carrier concentration, many-body effects gradually become important factors affecting devices' characteristics. Considering the effects of carrier scattering, bandgap renormalization, and Coulomb enhancement (CE), changes in the electroluminescence spectra of micro-LEDs are analyzed as the current density increases from 49.2 to 358.2 kA/cm2, the latter representing an ultra-high injection level. Affected by plasma screening, CE decreases below about 150 kA/cm2. After that, polarization screening dominates and effectively alleviates the spatial separation of electrons and holes, which results in CE increases to the maximum injection level of 358.2 kA/cm2. It is established that CE promotes radiative recombination processes. Different from the traditional phenomenon of "efficiency droop", the enhanced attraction between carriers leads to an abnormal increase of external quantum efficiency at high current density.

6.
Opt Express ; 29(20): 31594-31606, 2021 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-34615250

RESUMO

In this study, we propose a low-cost, simple and feasible post-processing approach to improve the light extraction efficiency (LEE) of LED packages. Amorphous photonic structures (APSs) with only short-range order are fabricated from anodic aluminum oxide (AAO) and transferred to intermediate polymer stamp (IPS) by nanoimprint technology. The IPS with APSs is directly mounted onto the surface of an LED package, where the LEE is achieved as 94.6%. The scanning electron microscope (SEM) images of AAO templates and imprinted IPS are analyzed by radial distribution function and diameter histogram. The far-field patterns of APS-mounted LED packages are measured in electroluminescence (EL). The three-dimensional finite-difference time-domain (3D-FDTD) calculations of transmittance of APSs confirm that they improve the light extraction above the critical angle. Two-dimensional Fourier power spectra from SEM images of APSs are also calculated. The LEE enhancement is attributed to that the APSs have short-range order on a length scale comparable to emission wavelength of LED. We provide novel multistage simulations in a simplified FDTD model for the LED package. Finally, we discuss the influence of the morphology of APSs on the LEE of the APS mounted LEDs.

7.
Small ; 16(29): e2001847, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32510861

RESUMO

Electrochemical CO2 reduction (ECR) to value-added chemicals and fuels is regarded as an effective strategy to mitigate climate change caused by CO2 from excess consumption of fossil fuels. To achieve CO2 conversion with high faradaic efficiency, low overpotential, and excellent product selectivity, rational design and synthesis of efficient electrocatalysts is of significant importance, which dominates the development of ECR field. Individual organic molecules or inorganic catalysts have encountered a bottleneck in performance improvement owing to their intrinsic shortcomings. Very recently, organic-inorganic hybrid nanomaterials as electrocatalysts have exhibited high performance and interesting reaction processes for ECR due to the integration of the advantages of both heterogeneous and homogeneous catalytic processes, attracting widespread interest. In this work, the recent advances in designing various organic-inorganic hybrid nanomaterials at the atomic and molecular level for ECR are systematically summarized. Particularly, the reaction mechanism and structure-performance relationship of organic-inorganic hybrid nanomaterials toward ECR are discussed in detail. Finally, the challenges and opportunities toward controlled synthesis of advanced electrocatalysts are proposed for paving the development of the ECR field.

8.
Fish Shellfish Immunol ; 98: 354-363, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31945483

RESUMO

L-type lectins (LTLs) belong to the lectin family and are characterized by a conserved structural motif in their carbohydrate recognition domain. LTLs are homologous to leguminous lectins. In this study, we identified and functionally characterized an LTL from kuruma shrimp Marsupenaeus japonicus. We designated this LTL as MjLTL2. MjLTL2 contains a signal peptide, a Lectin_leg domain, a coiled coil, and transmembrane domain. MjLTL2 is distributed in hemocytes, heart, hepatopancreas, gill, stomach, and intestine; higher expression levels are seen in hemocytes and the hepatopancreas than in other tissues. MjLTL2 was upregulated following challenge of shrimp with Vibrio anguillarum and white spot syndrome virus (WSSV). MjLTL2 can agglutinate several bacteria without Ca2+. In addition, MjLTL2 could bind to several Gram-positive and -negative bacteria by binding to their lipopolysaccharide and peptidoglycan. However, MjLTL2 could not enhance the clearance of V. anguillarum in vivo. In the presence of WSSV infection, MjLTL2 knockdown by RNA interference resulted in a 7-day lower cumulative mortality of M. japonicus. Moreover, less VP19, VP24, VP26, and VP28 mRNAs were extracted from the hemocytes of MjLTL2 knockdown shrimp than from the control. These results suggest that MjLTL2 is involved in immune responses in shrimp.


Assuntos
Proteínas de Artrópodes/metabolismo , Lectinas/metabolismo , Penaeidae/imunologia , Testes de Aglutinação , Sequência de Aminoácidos , Animais , Proteínas de Artrópodes/química , Proteínas de Artrópodes/genética , Resistência à Doença/genética , Regulação da Expressão Gênica , Imunidade Inata , Lectinas/química , Lectinas/genética , Penaeidae/classificação , Penaeidae/genética , Filogenia , Polissacarídeos Bacterianos/metabolismo , Alinhamento de Sequência , Taxa de Sobrevida , Distribuição Tecidual , Vibrio/fisiologia , Replicação Viral , Vírus da Síndrome da Mancha Branca 1/fisiologia
9.
Ecotoxicol Environ Saf ; 176: 11-19, 2019 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-30909000

RESUMO

Three-dimensional (3D) porous graphene oxide-maize amylopectin (GO-MA) composites with controllable pore-sizes composites in the range of 6-40 nm were prepared by facile hydrothermal-assisted assembly approaches. The morphologies, pore sizes, specific surface area (SSA) and compositions of GO-MAx:y composites with and different GO-to-MA mass ratios (x:y) were characterized by scanning electron microscopy (SEM), N2 adsorption-desorption isotherms, Fourier transform infrared spectroscopy (FT-IR) and X-ray photoelectron spectroscopy (XPS). To reveal the adsorption-desorption mechanism, effects of contact time, temperature, initial adsorbate concentration, pH value of the solution on the adsorption process were studied in detail. The adsorption capacities of 3D GO-MA20:1 composite for organic contaminants including tert-butyl hydroquinone (TBHQ), p-aminophenol (PAP), p-nitrophenol (PNP), o-nitrophenol (MNP), hydroquinone (HQ), alizarin red S (ARS) and neutral red (NR) were 22.17, 116.4, 44.78, 36.96, 16.10, 39.92 and 24.23 mg g-1, respectively. The adsorption capacities of GO-MA30:1 composite for inorganic substances including Pb2+, Mn2+, Cr2O72-, Cd2+, Cu2+, Nd3+, La3+, Y3+, Yb3+ and Er3+ were 84.76, 7.92, 13.6, 17.64, 30.56, 25.52, 12.48, 16.96, 23.32 and 30.32 mg g-1, respectively. In addition, GO-MAx:y composites also exhibited high mechanical properties and good reusability. Consequently, GO-MAx:y composites could be used as reusable adsorbents for removal/enrichment inorganic/organic substances in aqueous solutions.


Assuntos
Amilopectina/química , Grafite/química , Poluentes Químicos da Água/análise , Purificação da Água/métodos , Adsorção , Amilopectina/isolamento & purificação , Compostos Orgânicos , Óxidos/química , Espectroscopia Fotoeletrônica , Porosidade , Espectroscopia de Infravermelho com Transformada de Fourier , Temperatura , Água/química , Poluentes Químicos da Água/química , Zea mays/química
10.
Ecotoxicol Environ Saf ; 172: 167-175, 2019 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-30708228

RESUMO

In this study, platinum nanochains (PtNCs), multi-walled carbon nanotubes (MWCNTs) and graphene nanoparticles (GNPs) were assembled together to form a novel nanocomposite by a facile ultrasonic-assisted blending process. The PtNCs-MWCNTs-GNPs nanocomposite was characterized by high resolution transmission electron microscopy (HR-TEM), energy dispersive X-ray spectroscopy (EDS), scanning electron microscopy (SEM) and X-ray diffraction (XRD). The nanocomposite was used for the modification of glass carbon electrode (GCE) and simultaneous determination of dopamine (DA) and ascorbic acid (AA) by differential pulse voltammetry (DPV) and cycle voltammetry (CV). Under the optimum conditions, the calibration curves obtained are linear for the currents versus DA and AA concentrations over the range 2.00-50.0 µM and 100-1200 µM, respectively. And the detection limits for DA and AA are 0.500 µM and 10.0 µM, respectively. The detection and quantitative analysis of DA and AA in human serum and vitamin C tablets on PtNCs-MWCNTs-GNPs/GCE gave the recoveries of 104-110% and 101-108% with relative standard deviations (RSD) of 4.36-7.48% and 0.620-2.90%, respectively. The proposed PtNCs-MWCNTs-GNPs composite could provide a new platform for the routine analysis of DA and AA in terms of its good anti-interference ability, excellent reproducibility and repeatability, and feasibility of use.


Assuntos
Ácido Ascórbico/análise , Dopamina/análise , Platina/química , Ácido Ascórbico/sangue , Técnicas Biossensoriais , Dopamina/sangue , Técnicas Eletroquímicas , Eletrodos , Grafite/química , Humanos , Limite de Detecção , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Nanocompostos/química , Nanopartículas/química , Nanotubos de Carbono/química , Reprodutibilidade dos Testes
11.
Opt Express ; 26(5): 5265-5274, 2018 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-29529731

RESUMO

GaN/InGaN multi-quantum-wells (MQWs) micron light emitting diodes (µLEDs) with the size ranging from 10 to 300 µm are fabricated. Effects of strain relaxation on the performance of µLEDs have been investigated both experimentally and numerically. Kelvin probe force microscopy (KPFM) and micro-photoluminescence (µPL) are used to characterize the strained area on micron pillars. Strain relaxation and reducing polarization field in MQWs almost affects the whole mesa for 10 µm LEDs and about 4% area around the lateral for 300 µm LEDs. It makes a great contribution to high performance for smaller size µLEDs. Moreover, an indirect nanoscale strain measurement for µLEDs are provided.

12.
BMC Cancer ; 18(1): 658, 2018 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-29907144

RESUMO

BACKGROUND: CHD5 is a conventional tumour-suppressing gene in many tumours. The aim of this study was to determine whether CHD5 variants contribute to the risk of hepatocellular carcinoma (HCC). METHODS: Gene variants were identified using next-generation sequencing targeted on referenced mutations followed by TaqMan genotyping in two case-control studies. RESULTS: We discovered a rare variant (haplotype AG) in CHD5 (rs12564469-rs9434711) that was markedly associated with the risk of HCC in a Chinese population. A logistical regression model and permutation test confirmed the association. Indeed, the association quality increased in a gene dose-dependent manner as the number of samples increased. In the stratified analysis, this haplotype risk effect was statistically significant in a subgroup of alcohol drinkers. The false-positive report probability and multifactor dimensionality reduction further supported the finding. CONCLUSIONS: Our results suggest that the rare CHD5 gene haplotype and alcohol intake contribute to the risk of HCC. Our findings can be valuable to researchers of cancer precision medicine looking to improve diagnosis and treatment of HCC.


Assuntos
Carcinoma Hepatocelular/genética , DNA Helicases/genética , Neoplasias Hepáticas/genética , Proteínas do Tecido Nervoso/genética , Adulto , Idoso , Consumo de Bebidas Alcoólicas/efeitos adversos , Povo Asiático/genética , Estudos de Casos e Controles , Feminino , Interação Gene-Ambiente , Predisposição Genética para Doença , Haplótipos , Humanos , Masculino , Pessoa de Meia-Idade , Polimorfismo de Nucleotídeo Único
13.
Fish Shellfish Immunol ; 75: 223-230, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29427718

RESUMO

Activating transcription factor 6 (ATF6) pathway is the key branch of unfolded protein response (UPR). In this study, a homolog of ATFα from Marsupenaeus japonicus (MjATF6) was identified using genome sequencing and characterized, so as to investigate the role of ATF6 pathway in anti-viral immunity of M. japonicus. The cDNA of MjATF6 obtained was 1008 bp in length, with an open reading frame (ORF) of 849bp, which had encoded a putative of 283 amino acid proteins. Results of qRT-PCR showed that MjATF6 was distributed in all the six tested tissues, with the higher expression level being seen in hemocytes and hepatopancreas. Furthermore, MjATF6 expression would be up-regulated from 1 day to 7 day under white spot syndrome virus (WSSV) challenge. In comparison, RNA interference-induced MjATF6 knockdown had resulted in a lower 7-day cumulative mortality of M. japonicus in the presence of WSSV infection. Additionally, our results also revealed that less VP28 mRNA was extracted from hemocytes or hepatopancreas of MjATF6 knockdown shrimp than that from the control. Taken together, these results have confirmed that ATF6 pathway is vital for WSSV replication, and that UPR in M. japonicus may facilitate WSSV infection.


Assuntos
Fator 6 Ativador da Transcrição/genética , Fator 6 Ativador da Transcrição/imunologia , Regulação da Expressão Gênica/imunologia , Imunidade Inata/genética , Penaeidae/genética , Penaeidae/imunologia , Fator 6 Ativador da Transcrição/química , Sequência de Aminoácidos , Animais , Proteínas de Artrópodes/química , Proteínas de Artrópodes/genética , Proteínas de Artrópodes/imunologia , Sequência de Bases , Perfilação da Expressão Gênica , Filogenia , Alinhamento de Sequência , Vírus da Síndrome da Mancha Branca 1/fisiologia
14.
Ecotoxicol Environ Saf ; 166: 1-10, 2018 Dec 30.
Artigo em Inglês | MEDLINE | ID: mdl-30240929

RESUMO

Graphene oxide (GO) nanosheets were immobilized and cross-linked by high-gluten flour (HGF), and a series of biomass-GO composites with various HGF-to-GO mass ratios were fabricated through a one-step hydrothermal method. The HGF-GO composites were used as novel adsorbents to adsorb rare earth ions (REE3+: La3+, Yb3+, Y3+, Er3+ and Nd3+) from aqueous solutions, and their adsorption properties were also investigated detailly. To evaluate the physicochemical properties of HGF-GO composites and further understand the mechanisms of adsorption of REE3+ onto HGF-GO composites, the HGF-GO composites were characterized by scanning electron microscopy (SEM), thermal gravimetric analyzer (TGA), Raman spectroscopy and Fourier transform infrared (FT-IR) spectroscopy. Several important condition parameters including contact time, initial REE3+concentrations, solution pH values and temperature that might affect the adsorption process were studied in detail. The maximum adsorption capacities of HGF-GO1:1 composite toward La3+, Yb3+, Y3+, Er3+ and Nd3+ were 30.32, 36.64, 32.84, 42.36 and 48.68 mg g-1, respectively. The experimental data indicated that the adsorption of REE3+ onto HGF-GO1:1 was well fitted by the pseudo-second order kinetic model and the Langmuir isotherm model, and the adsorption process was a spontaneous and endothermic reaction. The HGF-GO1:1 composite could be well regenerated and reused after five adsorption-desorption cycles, and its removal efficiency for Yb3+ remained as a constant of 100%.


Assuntos
Glutens/química , Óxidos/química , Adsorção , Farinha , Grafite/química , Concentração de Íons de Hidrogênio , Íons/química , Cinética , Metais Terras Raras , Espectroscopia de Infravermelho com Transformada de Fourier , Temperatura , Poluentes Químicos da Água/análise , Purificação da Água/métodos
15.
Biochem Biophys Res Commun ; 490(2): 147-154, 2017 08 19.
Artigo em Inglês | MEDLINE | ID: mdl-28602698

RESUMO

Early growth response factor 1 (Egr-1) is a zinc finger transcription factor which responses rapidly to a variety of extracellular stimuli. Previous studies have suggested that Egr-1 exerts pathological functions in chronic obstructive pulmonary disease (COPD) by regulation of cigarette smoking-induced autophagy, cell death, and inflammation. However, little is known about the role of Egr-1 in regulation of mucus production in airway epithelium. In this study, we observed that cigarette smoke extract (CSE) induced a successive expression of Egr-1 and MUC5AC in human bronchial epithelial (HBE) cells. Knockdown of Egr-1 markedly attenuated CSE-induced MUC5AC production, and chromatin immunoprecipitation revealed that Egr-1 transcriptionally bound to MUC5AC promoter upon CSE stimulation. Concurrently, CSE increased the expression of c-Jun and c-Fos, two subunits of activator protein 1 (AP-1) which also critically regulates CSE-induced MUC5AC in HBE cells. CSE also induced a physical interaction of Egr-1 and AP-1, and knockdown of Egr-1 significantly decreased CSE-induced expression of c-Fos and c-Jun. Furthermore, knockdown of c-Fos remarkably attenuated the CSE-induced Egr-1 binding to MUC5AC promoter. These data taken together demonstrate that Egr-1 is essential for CSE-induced MUC5AC production in HBE cells likely through interaction with and modulation of AP-1, and re-emphasize targeting Egr-1 as a novel therapeutic strategy for COPD.


Assuntos
Brônquios/metabolismo , Proteína 1 de Resposta de Crescimento Precoce/metabolismo , Células Epiteliais/metabolismo , Mucina-5AC/genética , Fumar , Brônquios/patologia , Células Cultivadas , Proteína 1 de Resposta de Crescimento Precoce/genética , Proteína 1 de Resposta de Crescimento Precoce/isolamento & purificação , Células Epiteliais/patologia , Humanos , Mucina-5AC/metabolismo
18.
Sheng Li Xue Bao ; 68(3): 276-84, 2016 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-27350200

RESUMO

Previously, we have reported that transcription factor E2F1 expression is up-regulated in approximately 95% of small cell lung cancer tissue samples and closely associated with invasion and metastasis, but few studies have investigated specific target genes regulated by E2F1 in this disease. The aim of this study was to clarify the target genes controlled by E2F1 in the small cell lung cancer cell line H1688. The results of chromatin immunoprecipitation sequencing (ChIP-seq) showed that total 5 326 potential target genes were identified, in which 4 700 were structural genes and 626 long non-coding RNAs (lncRNAs). Gene Ontology (GO) and enrichment map analysis results indicated that these target genes were associated with three main functions: (1) cell cycle regulation, (2) chromatin and histone modification, and (3) protein transport. MEME4.7.0 software was used to identify the E2F1 binding DNA motif, and six motifs were discovered for coding genes and lncRNAs. These results clarify the target genes of E2F1, and provide the experimental basis for further exploring the roles of E2F1 in tumorigenesis, development, invasion and metastasis, recurrence, and drug resistance in small cell lung cancer.


Assuntos
Regulação Neoplásica da Expressão Gênica , Neoplasias Pulmonares , Carcinoma de Pequenas Células do Pulmão , Cromatina , Fator de Transcrição E2F1 , Humanos , Regulação para Cima
19.
Nucleic Acids Res ; 41(2): e35, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23132350

RESUMO

More and more evidences demonstrate that the long non-coding RNAs (lncRNAs) play many key roles in diverse biological processes. There is a critical need to annotate the functions of increasing available lncRNAs. In this article, we try to apply a global network-based strategy to tackle this issue for the first time. We develop a bi-colored network based global function predictor, long non-coding RNA global function predictor ('lnc-GFP'), to predict probable functions for lncRNAs at large scale by integrating gene expression data and protein interaction data. The performance of lnc-GFP is evaluated on protein-coding and lncRNA genes. Cross-validation tests on protein-coding genes with known function annotations indicate that our method can achieve a precision up to 95%, with a suitable parameter setting. Among the 1713 lncRNAs in the bi-colored network, the 1625 (94.9%) lncRNAs in the maximum connected component are all functionally characterized. For the lncRNAs expressed in mouse embryo stem cells and neuronal cells, the inferred putative functions by our method highly match those in the known literature.


Assuntos
Anotação de Sequência Molecular/métodos , RNA Longo não Codificante/fisiologia , Algoritmos , Animais , Encéfalo/metabolismo , Células-Tronco Embrionárias/metabolismo , Expressão Gênica , Humanos , Camundongos , Neurônios/metabolismo , Mapas de Interação de Proteínas , RNA Longo não Codificante/metabolismo
20.
Am J Physiol Lung Cell Mol Physiol ; 306(11): L1016-25, 2014 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-24727585

RESUMO

Autophagy plays a pivotal role in cellular homeostasis and adaptation to adverse environments, although the regulation of this process remains incompletely understood. We have recently observed that caveolin-1 (Cav-1), a major constituent of lipid rafts on plasma membrane, can regulate autophagy in cigarette smoking-induced injury of lung epithelium, although the underlying molecular mechanisms remain incompletely understood. In the present study we found that Cav-1 interacted with and regulated the expression of ATG12-ATG5, an ubiquitin-like conjugation system crucial for autophagosome formation, in lung epithelial Beas-2B cells. Deletion of Cav-1 increased basal and starvation-induced levels of ATG12-ATG5 and autophagy. Biochemical analyses revealed that Cav-1 interacted with ATG5, ATG12, and their active complex ATG12-ATG5. Overexpression of ATG5 or ATG12 increased their interactions with Cav-1, the formation of ATG12-ATG5 conjugate, and the subsequent basal levels of autophagy but resulted in decreased interactions between Cav-1 and another molecule. Knockdown of ATG12 enhanced the ATG5-Cav-1 interaction. Mutation of the Cav-1 binding motif on ATG12 disrupted their interaction and further augmented autophagy. Cav-1 also regulated the expression of ATG16L, another autophagy protein associating with the ATG12-ATG5 conjugate during autophagosome formation. Altogether these studies clearly demonstrate that Cav-1 competitively interacts with the ATG12-ATG5 system to suppress the formation and function of the latter in lung epithelial cells, thereby providing new insights into the molecular mechanisms by which Cav-1 regulates autophagy and suggesting the important function of Cav-1 in certain lung diseases via regulation of autophagy homeostasis.


Assuntos
Células Epiteliais Alveolares/fisiologia , Autofagia , Caveolina 1/metabolismo , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas Modificadoras Pequenas Relacionadas à Ubiquitina/metabolismo , Sequência de Aminoácidos , Animais , Proteína 12 Relacionada à Autofagia , Proteína 5 Relacionada à Autofagia , Proteínas Relacionadas à Autofagia , Ligação Competitiva , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Caveolina 1/genética , Linhagem Celular , Citoplasma/metabolismo , Regulação da Expressão Gênica , Humanos , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Knockout , Proteínas Associadas aos Microtúbulos/genética , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Mapeamento de Interação de Proteínas , Proteínas Modificadoras Pequenas Relacionadas à Ubiquitina/genética
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA