Genome-wide association study on legendre random regression coefficients for the growth and feed intake trajectory on Duroc Boars.

BACKGROUND: Feed intake and growth are economically important traits in swine production. Previous genome wide association studies (GWAS) have utilized average daily gain or daily feed intake to identify regions that impact growth and feed intake across time. The use of longitudinal models in GWAS studies, such as random regression, allows for SNPs having a heterogeneous effect across the trajectory to be characterized. The objective of this study is therefore to conduct a single step GWAS (ssGWAS) on the animal polynomial coefficients for feed intake and growth. RESULTS: Corrected daily feed intake (DFI Adj) and average daily weight measurements (DBW Avg) on 8981 (n=525,240 observations) and 5643 (n=283,607 observations) animals were utilized in a random regression model using Legendre polynomials (order=2) and a relationship matrix that included genotyped and un-genotyped animals. A ssGWAS was conducted on the animal polynomials coefficients (intercept, linear and quadratic) for animals with genotypes (DFIAdj: n=855; DBWAvg: n=590). Regions were characterized based on the variance of 10-SNP sliding windows GEBV (WGEBV). A bootstrap analysis (n=1000) was conducted to declare significance. Heritability estimates for the traits trajectory ranged from 0.34-0.52 to 0.07-0.23 for DBWAvg and DFIAdj, respectively. Genetic correlations across age classes were large and positive for both DBWAvg and DFIAdj, albeit age classes at the beginning had a small to moderate genetic correlation with age classes towards the end of the trajectory for both traits. The WGEBV variance explained by significant regions (P<0.001) for each polynomial coefficient ranged from 0.2-0.9 to 0.3-1.01% for DBWAvg and DFIAdj, respectively. The WGEBV variance explained by significant regions for the trajectory was 1.54 and 1.95% for DBWAvg and DFIAdj. Both traits identified candidate genes with functions related to metabolite and energy homeostasis, glucose and insulin signaling and behavior. CONCLUSIONS: We have identified regions of the genome that have an impact on the intercept, linear and quadratic terms for DBWAvg and DFIAdj. These results provide preliminary evidence that individual growth and feed intake trajectories are impacted by different regions of the genome at different times.

Assembly of Maghemite Nanoparticles Into Particulate Nanosheets and Their Application in Wastewater Treatment.

The maghemite particulate nanosheets (MPNs) are prepared in solvothermal system by connecting the nanoparticles in two-dimension. The interconnected MPNs sustain a mesopores structure with a high accessible surface area of 164 m2/g, and have a high performance for Cr6+ adsorption. The Cr6+ removal process fit with Langmuir adsorption model with an adsorption capacity of 20.41 mg/g. The purified solution could reach a residual concentration of 0.002 mg/L for MPNs, which is much less than the concentration in the solution of 0.249 mg/L when the nanoparticles are used. The synthesized MPNs with a saturation magnetization of 70.51 emu/g at room temperature can be easily collected and separated by an external magnet in liquid. Exchange coupling and shape anisotropy are the main reason for the higher Ms of MPNs. The unique structure with large surface area and high saturation magnetization make the MPNs favourable for the application of magnetic separation.

[Establishment of the detection method for two causative genes of cattle arachnomelia syndrome].

Arachnomelia syndrome (AS) is a recessive inherited disease in cattle. Although the arachnomelia phenotypes are virtually identical in Brown Swiss and Simmental cattle, the causative mutation are different, which are a 1 bp insertion c.363-364insG in the sulfite oxidase (SUOX) gene and a 2 bp deletion c.1224_1225delCA in the molybdenum cofactor syn-thesis step 1 (MOCS1) gene, respectively. In the current study, combining fluorescence PCR with capillary electrophoresis technology, an automatic fluorescence method was established, which could detect the two causative loci rapidly and cor-rectly with a single reaction. Samples from 51 Simmental bulls, 80 cows mated artificially using semen of Simmental bulls and their resulted 106 progeny, together with 55 Xinjiang Brown were collected and used for validation of the newly de-signed methods. Our results have laid a foundation for screening AS disease causing mutations in Chinese cattle.

Development and application of arachnomelia syndrome genetic detection in four Chinese dual-purpose cattle populations.

Arachnomelia syndrome (AS) is an autosomal recessive hereditary disorder in cattle, and affected calves are usually stillborn and characterized by complex anomalies. Therefore, identification of the carrier animals based on genetic tests is important for the control and elimination of this defect. The aim of this study was to build an effective workflow to routinely screen the AS mutations in bovine MOSC1 and SUOX genes and determine individuals carrying the AS mutations in four Chinese cattle populations. By combining the fluorescence-labeled PCR and capillary electrophoresis, we established a convenient and cost-effective workflow to detect two AS casual mutations simultaneously. Sanger sequencing was further used as a validation criterion and showed that 100% of the tests (37/37) had consistent results with genotype calls determined by our established workflow. Then, 582 bulls and 1-926 cows from Chinese dual-purpose cattle populations of Simmental, Sanhe, Shuxuan, and Xinjiang Brown were subjected to AS detection. The results showed that four bulls and 11 cows in the Simmental population, and six bulls and six cows in the Sanhe population were identified as AS carriers with the MOCS1 mutation c.1224_1225delCA. However, no animal was found to carry the c.363_364insG mutation in the SUOX gene. The frequencies of AS carriers were 1.08% and 1.65% in the Simmental and Sanhe populations, respectively, with a frequency of 1.076% in four populations. The pedigree analysis found that all carriers could be traced back to a common ancestor, the German Simmental sire ROMEL. Those findings suggested that this genetic defect spread into China mainly through the wide use of ROMEL. In conclusion, the occurrence of AS has not had a wide impact on the Chinese cattle industry; however, a screening system and mating strategy should be employed to gradually eliminate this recessive gene from the Chinese dual-purpose cattle population.

[Arachnomelia syndrome: a skeletal system malformation inherited disorder].

Arachnomelia syndrome (AS) is a lethal congenital malformation of skeleton in cattle, which proved to be an autosomal recessive inherited defect. This disease was mainly observed in European Brown Swiss and German Fleckvieh populations. This review focused on the discovery history, pathologic characteristics, mode of inheritance, and progresses on molecular mechanism of AS in both European Brown Swiss and German Fleckvieh populations. Moreover, through analyzing candidate genes in the mapping region related to bone development and using the methods of comparative genomics, this paper provides a starting point of identifying the causal gene(s) of AS and establishing detection method of the mutations.

Influence of polyols on the formation of iron oxide nanoparticles in solvothermal system.

We reported a simple solvothermal route in phase-controllable synthesis of iron oxide nanoparticles by using polyols as solvent. Magnetite and hematite are selectively synthesized while Fe(NO3)3.9H2O is used as single iron source and without any additives. While ethylene glycol, 1,2propanediol, 1,3-butanediol, or glycerol is used as solvents, magnetite nanoparticles are obtained, and the average particle sizes vary from 10 to 40 nm. While 1,4-butanediol or 1,5-pentanediol is used as solvents, hematite nanoparticles are obtained. Our results suggest that the polyols with neighboring hydroxyl groups is favorable for the formation of magnetite nanoparticles.

PVDF-Modified TiO2 Nanowires Membrane with Underliquid Dual Superlyophobic Property for Switchable Separation of Oil-Water Emulsions.

Separation membranes with underliquid dual superlyophobicity have recently caused widespread concern due to their switchable separation of oil-water mixtures and emulsions. However, the fabrication of the reported underliquid dual superlyophobic membranes is difficult, and the design of the underliquid dual superlyophobic surface of these membranes is challenging because of their complex surface composition. Theoretically, underliquid dual superlyophobicity is an underliquid Cassie state attainable by the synergy of the underliquid dual lyophobic surface and the construction of a high-roughness surface. Herein, we fabricated an underliquid dual superlyophobic membrane by combining underliquid dual lyophobic polyvinylidene fluoride (PVDF) and TiO2 nanowires. PVDF-modified TiO2 nanowire membranes with underliquid dual superlyophobicity were prepared via a simple adsorption and filtration approach. PVDF was coated onto TiO2 nanowires to form a PVDF layer with a thickness of 6 nm. The PVDF modification provided flexibility to the fragile TiO2 nanowires membrane and changed its wettability from underwater superoleophobicity/underoil superhydrophilicity to underliquid dual superlyophobicity. The PVDF-modified TiO2 nanowires membrane efficiently separated both oil-in-water and water-in-oil emulsions. The binary cooperative effect between the TiO2 nanowires and the coated PVDF layer was responsible for the underliquid dual superlyophobicity.

A Flexible, Self-Floating Composite for Efficient Water Evaporation.

A flexible, self-floating W18O49/carbon foam composite is fabricated by calcining melamine foam with W18O49 as an adsorbate in N2 atmosphere. This self-floating property is simply realized by a carbonization process other than the complicated surface modification process. The simple synthesis procedure helps to increase not only the solar absorption but also the retention of W18O49 in the porous net structure. This composite absorbs almost the whole solar spectrum and generates localized heat at the surface, which is beneficial for water evaporation. Its water evaporation rate is 6.6 times higher than that of pure water. It has a stable cyclic performance over ten cycles under the illumination of simulated sunlight (500 W Xe lamp). Its flexibility makes it easy to reuse and transfer, which is evaluated by the bending deformation test. The W18O49/carbon foam composite is a prospective material in solar energy conversion field, and the preparation procedure is feasible to scale-up.

Photothermal Conversion of W18O49 with a Tunable Oxidation State.

W18O49 with a tunable oxidation state was prepared by addition of NaNO3 or NaBH4 as a redox agent in the solvothermal system. The addition of redox agents has no influence on the crystallization of W18O49. The obtained W18O49 structures keep their morphology as a bundle of nanowires with a regular hexagonal on the cross-section. W18O49 exhibits strong valence-dependent absorption features in the near-IR region. Reduced W18O49 with more W5+ has a higher concentration of oxygen vacancies, which enhances the localized surface plasmon resonance effect. Reduced W18O49 exhibits a high photothermal conversion efficiency of 59.6 % and has good photothermal stability.

Porous TiO2 Assembled from Monodispersed Nanoparticles.

Porous TiO2 were assembled by evaporating or refluxing TiO2 colloid, which was obtained by dispersing the TiO2 nanoparticles with a crystallite size (d XRD) of 3.2 nm into water or ethanol without any additives. Porous transparent bulk TiO2 was obtained by evaporating the TiO2-C2H5OH colloid at room temperature for 2 weeks, while porous TiO2 nanospheres were assembled by refluxing the TiO2-H2O colloid at 80 °C for 36 h. Both of the porous TiO2 architectures were pore-size-adjustable depending on the further treating temperature. Porous TiO2 nanospheres exhibited enhanced photocatalysis activity compared to the nanoparticles.

Fast response and highly selective sensing of amine vapors using a luminescent coordination polymer.

Detecting volatile amines is a significant topic in the quality control of food and medical diagnosis. We report the first Eu-coordination polymer (CP) as a sensory material for the detection of a class of amine vapors with high selectivity and rapid response.

A top-down route for preparation of ultrathin zinc oxide nanowires.

Zinc oxide nanowires have been successfully obtained through the splitting of layered basic zinc acetates. The layered basic zinc acetates nanobelts served as intermediates are prepared by adding water into zinc oxide ethanol colloids. Zinc oxide nanowires have uniform diameters of about 3-5 nm and lengths of several hundred nanometers. The formation mechanism of zinc oxide nanowires is proposed. The mechanism is that zinc oxide nanowires are generated by the splitting of the layered compound. From this mechanism, we find that the structure characteristic of layered basic zinc acetates is essential for the formation of ZnO nanowires. We also discuss the relationship between the morphology of products obtained after incubating and incubating time. The products are characterized by X-ray powder diffraction, transmission electron microscopy, scanning transmission electron microscopy and infrared spectrum.

Magnetic photocatalysts with a p-n junction: Fe3O4 nanoparticle and FeWO4 nanowire heterostructures.

Magnetic n-type semiconductor Fe3O4 nanoparticle and p-type semiconductor FeWO4 nanowire heterostructures were successfully synthesized without any surfactants or templates via a facile one-step hydrothermal process at 160 °C. The heterojunction structure and morphology were characterized by X-ray powder diffraction (XRD), transmission electron microscopy (TEM) and high-resolution transmission electron microscopy (HRTEM). Magnetic measurements indicated the coexistence of ferrimagnetic behavior of Fe3O4 and weak antiferromagnetic behavior of FeWO4. The degradation of methylene blue (MB) under UV-Visible light irradiation was studied as a model experiment to evaluate the catalytic activity of the Fe3O4/FeWO4 heterostructure p-n junctions. The decomposition efficiency was 97.1% after one hour UV-Visible irradiation. This magnetic photocatalyst can be easily recovered from the solution using a permanent magnet and redispersed by removing the magnet.

Identification of the causative gene for Simmental arachnomelia syndrome using a network-based disease gene prioritization approach.

Arachnomelia syndrome (AS), mainly found in Brown Swiss and Simmental cattle, is a congenital lethal genetic malformation of the skeletal system. In this study, a network-based disease gene prioritization approach was implemented to rank genes in the previously reported ∼7 Mb region on chromosome 23 associated with AS in Simmental cattle. The top 6 ranked candidate genes were sequenced in four German Simmental bulls, one known AS-carrier ROMEL and a pooled sample of three known non-carriers (BOSSAG, RIFURT and HIRMER). Two suspicious mutations located in coding regions, a mis-sense mutation c.1303G>A in the bystin-like (BYSL) gene and a 2-bp deletion mutation c.1224_1225delCA in the molybdenum cofactor synthesis step 1 (MOCS1) gene were detected. Bioinformatic analysis revealed that the mutation in MOCS1 was more likely to be the causative mutation. Screening the c.1224_1225delCA site in 383 individuals from 12 cattle breeds/lines, we found that only the bull ROMEL and his 12 confirmed progeny carried the mutation. Thus, our results confirm the conclusion of Buitkamp et al. that the 2-bp deletion mutation c.1224_1225delCA in exon 11 of the MOCS1 gene is causative for AS in Simmental cattle. Furthermore, a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) was developed to detect the causative mutation.

A facile synthetic approach for copper iron sulfide nanocrystals with enhanced thermoelectric performance.

Chalcopyrite CuFeS(2) nanocrystals with a diameter of 6.4 nm were synthesized using a facile solution-phase method. Due to quantum confinement, the CuFeS(2) nanocrystals exhibit a maximum ZT value of 0.264 at 500 K, which is 77 times the value of bulk chalcopyrite.