Electrophysiological brain imaging based on simulation-driven deep learning in the context of epilepsy.

Identifying the location, the spatial extent and the electrical activity of distributed brain sources in the context of epilepsy through ElectroEncephaloGraphy (EEG) recordings is a challenging task because of the highly ill-posed nature of the underlying Electrophysiological Source Imaging (ESI) problem. To guarantee a unique solution, most existing ESI methods pay more attention to solve this inverse problem by imposing physiological constraints. This paper proposes an efficient ESI approach based on simulation-driven deep learning. Epileptic High-resolution 256-channels scalp EEG (Hr-EEG) signals are simulated in a realistic manner to train the proposed patient-specific model. More particularly, a computational neural mass model developed in our team is used to generate the temporal dynamics of the activity of each dipole while the forward problem is solved using a patient-specific three-shell realistic head model and the boundary element method. A Temporal Convolutional Network (TCN) is considered in the proposed model to capture local spatial patterns. To enable the model to observe the EEG signals from different scale levels, the multi-scale strategy is leveraged to capture the overall features and fine-grain features by adjusting the convolutional kernel size. Then, the Long Short-Term Memory (LSTM) is used to extract temporal dependencies among the computed spatial features. The performance of the proposed method is evaluated through three different scenarios of realistic synthetic interictal Hr-EEG data as well as on real interictal Hr-EEG data acquired in three patients with drug-resistant partial epilepsy, during their presurgical evaluation. A performance comparison study is also conducted with two other deep learning-based methods and four classical ESI techniques. The proposed model achieved a Dipole Localization Error (DLE) of 1.39 and Normalized Hamming Distance (NHD) of 0.28 in the case of one patch with SNR of 10 dB. In the case of two uncorrelated patches with an SNR of 10 dB, obtained DLE and NHD were respectively 1.50 and 0.28. Even in the more challenging scenario of two correlated patches with an SNR of 10 dB, the proposed approach still achieved a DLE of 3.74 and an NHD of 0.43. The results obtained on simulated data demonstrate that the proposed method outperforms the existing methods for different signal-to-noise and source configurations. The good behavior of the proposed method is also confirmed on real interictal EEG data. The robustness with respect to noise makes it a promising and alternative tool to localize epileptic brain areas and to reconstruct their electrical activities from EEG signals.

A reduced complexity ECG imaging model for regularized inversion optimization.

The resolution of the inverse problem of electrocardiography represents a major interest in the diagnosis and catheter-based therapy of cardiac arrhythmia. In this context, the ability to simulate several cardiac electrical behaviors was crucial for evaluating and comparing the performance of inversion methods. For this application, existing models are either too complex or do not produce realistic cardiac patterns. In this work, a low-resolution heart-torso model generating realistic whole heart cardiac mappings and electrocardiograms in healthy and pathological cases is designed. This model was built upon a simplified heart-torso geometry and implements the monodomain formalism by using the finite element method. In addition, a model reduction step through a sensitivity analysis was proposed where parameters were identified using an evolutionary optimization approach. Finally, the study illustrates the usefulness of the proposed model by comparing the performance of different variants of Tikhonov-based inversion methods for the determination of the regularization parameter in healthy, ischemic and ventricular tachycardia scenarios. First, results of the sensitivity analysis show that among 58 parameters only 25 are influent. Note also that the level of influence of the parameters depends on the heart region. Besides, the synthesized electrocardiograms globally present the same characteristic shape compared to the reference once with a correlation value that reaches 88%. Regarding inverse problem, results highlight that only Robust Generalized Cross Validation and Discrepancy Principle provide best performance, with a quasi-perfect success rate for both, and a respective relative error, between the generated electrocardiograms to the reference one, of 0.75 and 0.62.

Epileptic Seizure Prediction Using Deep Neural Networks Via Transfer Learning and Multi-Feature Fusion.

Epilepsy is one of the most common neurological diseases, which can seriously affect the patient's psychological well-being and quality of life. An accurate and reliable seizure prediction system can generate alarm before epileptic seizures to provide patients and their caregivers with sufficient time to take appropriate action. This study proposes an efficient seizure prediction system based on deep learning in order to anticipate the onset of the seizure as early as possible. Handcrafted features extracted based on the prior knowledge and hidden deep features are complementarily fused through the feature fusion module, and then the hybrid features are fed into the multiplicative long short-term memory (MLSTM) to explore the temporal dependency in EEG signals. A one-dimensional channel attention mechanism is implemented to emphasize the more representative information in the multi-channel output of the MLSTM. Finally, a transfer learning strategy is proposed to transfer the weights of the base model trained on the EEG data of all patients to the target patient model, and the latter is then continuously trained using the EEG data of the target patient. The proposed method achieves an average sensitivity of 95.56% and a false positive rate (FPR) of 0.27/h on the SWEC-ETHZ intracranial EEG data. For the more challenging CHB-MIT scalp EEG database, an average sensitivity of 89.47% and a FPR of 0.34/h are obtained. Experimental results demonstrate that the proposed method has good robustness and generalization ability in both intracranial and scalp EEG signals.

Turning Tangent Empirical Mode Decomposition: A Framework for Mono- and Multivariate Signals.

A novel Empirical Mode Decomposition (EMD) algorithm, called 2T-EMD, for both mono- and multivariate signals is proposed in this paper. It differs from the other approaches by its computational lightness and its algorithmic simplicity. The method is essentially based on a redefinition of the signal mean envelope, computed thanks to new characteristic points, which offers the possibility to decompose multivariate signals without any projection. The scope of application of the novel algorithm is specified, and a comparison of the 2T-EMD technique with classical methods is performed on various simulated mono- and multivariate signals. The monovariate behaviour of the proposed method on noisy signals is then validated by decomposing a fractional Gaussian noise and an application to real life EEG data is finally presented.

Independent component analysis for rectal bleeding prediction following prostate cancer radiotherapy.

BACKGROUND AND PURPOSE: To evaluate the benefit of independent component analysis (ICA)-based models for predicting rectal bleeding (RB) following prostate cancer radiotherapy. MATERIALS AND METHODS: A total of 593 irradiated prostate cancer patients were prospectively analyzed for Grade ≥2 RB. ICA was used to extract two informative subspaces (presenting RB or not) from the rectal DVHs, enabling a set of new pICA parameters to be estimated. These DVH-based parameters, along with others from the principal component analysis (PCA) and functional PCA, were compared to "standard" features (patient/treatment characteristics and DVH bins) using the Cox proportional hazards model for RB prediction. The whole cohort was divided into: (i) training (N = 339) for ICA-based subspace identification and Cox regression model identification and (ii) validation (N = 254) for RB prediction capability evaluation using the C-index and the area under the receiving operating curve (AUC), by comparing predicted and observed toxicity probabilities. RESULTS: In the training cohort, multivariate Cox analysis retained pICA and PC as significant parameters of RB with 0.65 C-index. For the validation cohort, the C-index increased from 0.64 when pICA was not included in the Cox model to 0.78 when including pICA parameters. When pICA was not included, the AUC for 3-, 5-, and 8-year RB prediction were 0.68, 0.66, and 0.64, respectively. When included, the AUC increased to 0.83, 0.80, and 0.78, respectively. CONCLUSION: Among the many various extracted or calculated features, ICA parameters improved RB prediction following prostate cancer radiotherapy.

A Penalized Semialgebraic Deflation ICA Algorithm for the Efficient Extraction of Interictal Epileptic Signals.

As a noninvasive technique, electroencephalography (EEG) is commonly used to monitor the brain signals of patients with epilepsy such as the interictal epileptic spikes. However, the recorded data are often corrupted by artifacts originating, for example, from muscle activities, which may have much higher amplitudes than the interictal epileptic signals of interest. To remove these artifacts, a number of independent component analysis (ICA) techniques were successfully applied. In this paper, we propose a new deflation ICA algorithm, called penalized semialgebraic unitary deflation (P-SAUD) algorithm, that improves upon classical ICA methods by leading to a considerably reduced computational complexity at equivalent performance. This is achieved by employing a penalized semialgebraic extraction scheme, which permits us to identify the epileptic components of interest (interictal spikes) first and obviates the need of extracting subsequent components. The proposed method is evaluated on physiologically plausible simulated EEG data and actual measurements of three patients. The results are compared to those of several popular ICA algorithms as well as second-order blind source separation methods, demonstrating that P-SAUD extracts the epileptic spikes with the same accuracy as the best ICA methods, but reduces the computational complexity by a factor of 10 for 32-channel recordings. This superior computational efficiency is of particular interest considering the increasing use of high-resolution EEG recordings, whose analysis requires algorithms with low computational cost.

Automatic Detection and Classification of High-Frequency Oscillations in Depth-EEG Signals.

GOAL: Interictal high-frequency oscillations (HFOs [30-600 Hz]) have proven to be relevant biomarkers in epilepsy. In this paper, four categories of HFOs are considered: Gamma ([30-80 Hz]), high-gamma ([80-120 Hz]), ripples ([120-250 Hz]), and fast-ripples ([250-600 Hz]). A universal detector of the four types of HFOs is proposed. It has the advantages of 1) classifying HFOs, and thus, being robust to inter and intrasubject variability; 2) rejecting artefacts, thus being specific. METHODS: Gabor atoms are tuned to cover the physiological bands. Gabor transform is then used to detect HFOs in intracerebral electroencephalography (iEEG) signals recorded in patients candidate to epilepsy surgery. To extract relevant features, energy ratios, along with event duration, are investigated. Discriminant ratios are optimized so as to maximize among the four types of HFOs and artefacts. A multiclass support vector machine (SVM) is used to classify detected events. Pseudoreal signals are simulated to measure the performance of the method when the ground truth is known. RESULTS: Experiments are conducted on simulated and on human iEEG signals. The proposed method shows high performance in terms of sensitivity and false discovery rate. CONCLUSION: The methods have the advantages of detecting and discriminating all types of HFOs as well as avoiding false detections caused by artefacts. SIGNIFICANCE: Experimental results show the feasibility of a robust and universal detector.

Blind source separation for ambulatory sleep recording.

This paper deals with the conception of a new system for sleep staging in ambulatory conditions. Sleep recording is performed by means of five electrodes: two temporal, two frontal and a reference. This configuration enables to avoid the chin area to enhance the quality of the muscular signal and the hair region for patient convenience. The electroencephalopgram (EEG), eletromyogram (EMG), and electrooculogram (EOG) signals are separated using the Independent Component Analysis approach. The system is compared to a standard sleep analysis system using polysomnographic recordings of 14 patients. The overall concordance of 67.2% is achieved between the two systems. Based on the validation results and the computational efficiency we recommend the clinical use of the proposed system in a commercial sleep analysis platform.

Early diagnosis of NAFLD-NASH transition using mid infrared spectroscopy.

Non-alcoholic fatty liver disease (NAFLD) is defined as an excessive accumulation of fat in the liver in the absence of excessive drinking of alcohol. Initially considered as benign and self-limited, NAFLD may progress to the malignant stage of non-alcoholic steatohepatitis (NASH) characterized by degenerate hepatocellular ballooning and lobular inflammation. NASH can lead to hepatic fibrosis and ultimately to cirrhosis and hepatocellular carcinoma. Unfortunately, the transition from NAFLD to NASH is difficult to detect so far. In this paper, we propose to evaluate the characterization of NASH using mid infrared fiber evanescent wave spectroscopy on blood serum. We used an heuristic variable selection method and a generalized linear model to classify NAFLD and NASH spectra. The obtained results proved that this technique is a promising non-invasive and simple diagnosis tool for NASH.

Classification of high frequency oscillations in epileptic intracerebral EEG.

High Frequency Oscillations (HFOs 40-500 Hz), recorded from intracerebral electroencephalography (iEEG) in epileptic patients, are categorized into four distinct sub-bands (Gamma, High-Gamma, Ripples and Fast Ripples). They have recently been used as a reliable biomarker of epileptogenic zones. The objective of this paper is to investigate the possibility of discriminating between the different classes of HFOs which physiological/pathological value is critical for diagnostic but remains to be clarified. The proposed method is based on the definition of a relevant feature vector built from energy ratios (computed using Wavelet Transform-WT) in a-priori-defined frequency bands. It makes use of a multiclass Linear Discriminant Analysis (LDA) and is applied to iEEG signals recorded in patients candidate to epilepsy surgery. Results obtained from bootstrap on training/test datasets indicate high performances in terms of sensitivity and specificity.

A new parameter computed with independent component analysis to predict rectal toxicity following prostate cancer radiotherapy.

The main challenge in prostate cancer radiotherapy is to deliver the prescribed dose to the clinical target while minimizing the dose to the neighboring organs at risk and thus avoiding subsequent toxicity-related events. With the aim of improving toxicity prediction following prostate cancer radiotherapy, the goal of our work is to propose a new predictive variable computed with independent component analysis to predict late rectal toxicity, and to compare its performance to other models (logistic regression, normal tissue complication probability model and recent principal component analysis approach). Clinical data and dose-volume histograms were collected from 216 patients having received 3D conformal radiation for prostate cancer with at least two years of follow-up. Independent component analysis was trained to predict the risk of 3-year rectal bleeding Grade ≥ 2. The performance of all the models was assessed by computing the area under the receiving operating characteristic curve. Clinical parameters combined with the new variable were found to be predictors of rectal bleeding. The mean area under the receiving operating curve for our proposed approach was 0:75. The AUC values for the logistic regression, the Lyman-Kutcher-Burman model and the recent principal component analysis approach were 0:62, 0:53 and 0:62, respectively. Our proposed new variable may be an useful new tool in predicting late rectal toxicity. It appears as a strong predictive variable to improve classical models.

On feature extraction and classification in prostate cancer radiotherapy using tensor decompositions.

External beam radiotherapy is commonly prescribed for prostate cancer. Although new radiation techniques allow high doses to be delivered to the target, the surrounding healthy organs (rectum and bladder) may suffer from irradiation, which might produce undesirable side-effects. Hence, the understanding of the complex toxicity dose-volume effect relationships is crucial to adapt the treatment, thereby decreasing the risk of toxicity. In this paper, we introduce a novel method to classify patients at risk of presenting rectal bleeding based on a Deterministic Multi-way Analysis (DMA) of three-dimensional planned dose distributions across a population. After a non-rigid spatial alignment of the anatomies applied to the dose distributions, the proposed method seeks for two bases of vectors representing bleeding and non bleeding patients by using the Canonical Polyadic (CP) decomposition of two fourth order arrays of the planned doses. A patient is then classified according to its distance to the subspaces spanned by both bases. A total of 99 patients treated for prostate cancer were used to analyze and test the performance of the proposed approach, named CP-DMA, in a leave-one-out cross validation scheme. Results were compared with supervised (linear discriminant analysis, support vector machine, K-means, K-nearest neighbor) and unsupervised (recent principal component analysis-based algorithm, and multidimensional classification method) approaches based on the registered dose distribution. Moreover, CP-DMA was also compared with the Normal Tissue Complication Probability (NTCP) model. The CP-DMA method allowed rectal bleeding patients to be classified with good specificity and sensitivity values, outperforming the classical approaches.

A Novel Classification Method for Prediction of Rectal Bleeding in Prostate Cancer Radiotherapy Based on a Semi-Nonnegative ICA of 3D Planned Dose Distributions.

The understanding of dose/side-effects relationships in prostate cancer radiotherapy is crucial to define appropriate individual's constraints for the therapy planning. Most of the existing methods to predict side-effects do not fully exploit the rich spatial information conveyed by the three-dimensional planned dose distributions. We propose a new classification method for three-dimensional individuals' doses, based on a new semi-nonnegative ICA algorithm to identify patients at risk of presenting rectal bleeding from a population treated for prostate cancer. The method first determines two bases of vectors from the population data: the two bases span vector subspaces, which characterize patients with and without rectal bleeding, respectively. The classification is then achieved by calculating the distance of a given patient to the two subspaces. The results, obtained on a cohort of 87 patients (at two year follow-up) treated with radiotherapy, showed high performance in terms of sensitivity and specificity.

Automatic detection of fast ripples.

OBJECTIVE: We propose a new method for automatic detection of fast ripples (FRs) which have been identified as a potential biomarker of epileptogenic processes. METHODS: This method is based on a two-stage procedure: (i) global detection of events of interest (EOIs, defined as transient signals accompanied with an energy increase in the frequency band of interest 250-600Hz) and (ii) local energy vs. frequency analysis of detected EOIs for classification as FRs, interictal epileptic spikes or artifacts. For this second stage, two variants were implemented based either on Fourier or wavelet transform. The method was evaluated on simulated and real depth-EEG signals (human, animal). The performance criterion was based on receiving operator characteristics. RESULTS: The proposed detector showed high performance in terms of sensitivity and specificity. CONCLUSIONS: As designed to specifically detect FRs, the method outperforms any method simply based on the detection of energy changes in high-pass filtered signals and avoids spurious detections caused by sharp transient events often present in raw signals. SIGNIFICANCE: In most of epilepsy surgery units, huge data sets are generated during pre-surgical evaluation. We think that the proposed detection method can dramatically decrease the workload in assessing the presence of FRs in intracranial EEGs.

Surface electrocardiogram reconstruction from intracardiac electrograms using a dynamic time delay artificial neural network.

This study proposes a method to facilitate the remote follow up of patients suffering from cardiac pathologies and treated with an implantable device, by synthesizing a 12-lead surface ECG from the intracardiac electrograms (EGM) recorded by the device. Two methods (direct and indirect), based on dynamic time-delay artificial neural networks (TDNNs) are proposed and compared with classical linear approaches. The direct method aims to estimate 12 different transfer functions between the EGM and each surface ECG signal. The indirect method is based on a preliminary orthogonalization phase of the available EGM and ECG signals, and the application of the TDNN between these orthogonalized signals, using only three transfer functions. These methods are evaluated on a dataset issued from 15 patients. Correlation coefficients calculated between the synthesized and the real ECG show that the proposed TDNN methods represent an efficient way to synthesize 12-lead ECG, from two or four EGM and perform better than the linear ones. We also evaluate the results as a function of the EGM configuration. Results are also supported by the comparison of extracted features and a qualitative analysis performed by a cardiologist.

On joint diagonalization of cumulant matrices for independent component analysis of MRS and EEG signals.

An extension of the original implementation of JADE, named eJADE((1)) hereafter, was proposed in 2001 to perform independent component analysis for any combination of statistical orders greater than or equal to three. More precisely, eJADE((1)) relies on the joint diagonalization of a set of several cumulant matrices corresponding to different matrix slices of one or several higher order cumulant tensors. An efficient way, without lose of statistical information, of reducing the number of third and fourth order cumulant matrices to be jointly diagonalized is proposed in this paper. The resulting approach, named eJADE(3,4)((2)), can be interpreted as an improvement of the eJADE(3,4)((1)) method. A performance comparison with classical methods is conducted in the context of MRS and EEG signals showing the good behavior of our technique.

Blind source separation methods applied to synthesized polysomnographic recordings: a comparative study.

Blind Source Separation (BSS) problems, under the assumption of static mixture, were extensively explored from the theoretical point of view. Powerful algorithms are now at hand to deal with many concrete BSS applications. Nevertheless, the performances of BSS methods, for a given biomedical application, are rarely investigated. The aim of this paper is to perform quantitative comparisons between various well-known BSS techniques. To do so, synthetic data, reproducing real polysomnographic recordings, are considered.