A General Picture of Cucurbit[8]uril Host-Guest Binding: Recalibrating Bonded Interactions.

Atomic-level understanding of the dynamic feature of host-guest interactions remains a central challenge in supramolecular chemistry. The remarkable guest binding behavior of the Cucurbiturils family of supramolecular containers makes them promising drug carriers. Among Cucurbit[n]urils, Cucurbit[8]uril (CB8) has an intermediate portal size and cavity volume. It can exploit almost all host-guest recognition motifs formed by this host family. In our previous work, an extensive computational investigation of the binding of seven commonly abused and structurally diverse drugs to the CB8 host was performed, and a general dynamic binding picture of CB8-guest interactions was obtained. Further, two widely used fixed-charge models for drug-like molecules were investigated and compared in great detail, aiming at providing guidelines in choosing an appropriate charge scheme in host-guest modelling. Iterative refitting of atomic charges leads to improved binding thermodynamics and the best root-mean-squared deviation from the experimental reference is 2.6 kcal/mol. In this work, we focus on a thorough evaluation of the remaining parts of classical force fields, i.e., the bonded interactions. The widely used general Amber force fields are assessed and refitted with generalized force-matching to improve the intra-molecular conformational preference, and thus the description of inter-molecular host-guest interactions. The interaction pattern and binding thermodynamics show a significant dependence on the modelling parameters. The refitted system-specific parameter set improves the consistency of the modelling results and the experimental reference significantly. Finally, combining the previous charge-scheme comparison and the current force-field refitting, we provide general guidelines for the theoretical modelling of host-guest binding.

The structural properties of a ZnCl2-ethylene glycol binary system and the peculiarities at the eutectic composition.

ATR-FTIR spectroscopy was performed on a series of ZnCl2-ethylene glycol (EG) mixtures with a wide-range of compositions (1 : 1.5-1 : 14 in molar ratios), involving the stable ZnCl2-4EG deep-eutectic solvent (DES) composition, to explore the spectral variations, structural heterogeneity, and hydrogen bonding (H-bonding) properties. To enhance the resolution of the spectra, excess absorption and two-dimensional correlation spectroscopies were employed. In the initial IR spectra, a quasi-isosbestic point was identified, signaling that the major disturbance on EG microstructures by adding ZnCl2 is to form a distinct complex. Further analysis uncovered the main transformation process to be from the EG tetramer to the ZnCl2-4EG complex. It was also found that as the EG content increases, negative charge increasingly transfers to ZnCl2, resulting in the strengthening of the Zn ← O coordination bonds and the weakening and finally dissociation of Zn-Cl bonds. Regarding the ZnCl2-4EG DES, several incomparable specificities were observed. It was found that ZnCl2 destructed the H-bonding network of pure EG to the largest extent, resulting in the highest production of the dimer and trimer of EG. Moreover, in comparison with other compositions, the ZnCl2-4EG DES showed abrupt increases in the negative charge of the salt, the length of the Zn-Cl bond, and the strength of the Zn ← O coordination bond. All these imply the strongest intermolecular interactions and the highest solvation of ZnCl2 in EG at the eutectic composition compared to those of other mixtures, resulting in a super-stable liquid mixture. The work provides physical insights into the structural and interactive properties of deep-eutectic solvents.

The Structures of ZnCl2-Ethanol Mixtures, a Spectroscopic and Quantum Chemical Calculation Study.

We report in this article the structural properties, spectral behavior and heterogeneity of ZnCl2-ethanol (EtOH) mixtures in a wide-composition range (1:3 to 1:14 in molar ratios), using ATR-FTIR spectroscopy and quantum chemical calculations. To improve the resolution of the initial IR spectra, excess spectroscopy and two-dimensional correlation spectroscopy were employed. The transformation process was suggested to be from EtOH trimer and EtOH tetramer to EtOH monomer, EtOH dimer and ZnCl2-3EtOH complex upon mixing. The theoretical findings showed that increasing the content of EtOH was accompanied with the flow of negative charge to ZnCl2. This led to reinforcement of the Zn←O coordination bonds, increase of the ionic character of Zn‒Cl bond and weakening and even dissociation of the Zn‒Cl bond. It was found that in some of the ZnCl2-EtOH complexes optimized at the gas phase or under the solvent effect, there existed hydroxyls with a very special interactive array in the form of Cl‒Zn+←O‒H…Cl-, which incredibly red-shifted to wavenumbers <3000 cm-1. This in-depth study shows the physical insights of the respective electrolyte alcoholic solutions, particularly the solvation process of the salt, help to rationalize the reported experimental results, and may shed light on understanding the properties of the deep eutectic solvents formed from ZnCl2 and an alcohol.

Influence of Hydration on the Structure and Interactions of Ethaline Deep-Eutectic Solvent: A Spectroscopic and Computational Study.

Deep-eutectic solvents (DESs) are regarded as alternative green solvents to ionic liquids. In this work we report the structural properties and hydrogen bonding (H-bonding) interactions of an aqueous DES system. The used DES, ethaline (ETH), is composed of choline chloride and ethylene glycol (EG) in 1 : 2 molar ratio. The investigations were carried out by FTIR spectroscopy combined with quantum chemical calculations. Excess spectroscopy and two-dimensional correlation spectroscopy (2D-COS) were used to explore the data in detail. The results showed that, upon mixing, ETH transforms to EG dimers and trimers and D2 O clusters transform to various ETH-D2 O complexes. Theoretical calculations show that water molecules insert between the anion and cation of ETH, break the strong doubly ionic Cl-… H-OCh+ H-bond, share charges of the ions and form H-bond with them, thus modulate the interaction properties of ETH. This study deepens our molecular-level understanding of the system and would shed light on its applications.

Is the Fourier Transform Infrared Free-OH Band of t-Butanol Only from Free OHs? Case Studies on the Binary Systems of the Alcohol with CCl4 and CHCl3.

Attenuated total reflection-Fourier transform infrared spectroscopy and quantum chemical calculations were performed on tert-butyl alcohol (t-BuOH) and its binary solutions with CCl4 and CHCl3. The study was focused on the free-OH stretching bands. Two resolution-enhancing methods, excess spectroscopy and two-dimensional correlation spectroscopy, were employed to examine the structural heterogeneity and search for the detailed contributors to the free-OH bands. Unexpectedly, CCl4 was found not to be an inert solvent and, similar to CHCl3, formed hydrogen/halogen bonds (H-/X-bond) with t-BuOH. It was observed that the free-OH band in the t-BuOH-CHCl3 system is larger and more red-shifted than that in the t-BuOH-CCl4 system, indicating the stronger intermolecular interactions in the former system. Furthermore, in the t-BuOH-CHCl3 system, the H-bonds are stronger than the X-bonds, while in the t-BuOH-CCl4 system, both interactions are similar in strength. To assign the free-OH bands, it was found that they are not only from the free OH of the t-BuOH monomer, but they are also contributed by the quasi-free OH with the oxygen bonded to H or Cl and even the weakly H-bonded OH of t-BuOH molecules. Finally, all the identified species increased simultaneously via cosolvent addition, suggestive of the destabilization of the highly associated t-BuOH clusters.

Deep Eutectic Solvents for Pretreatment, Extraction, and Catalysis of Biomass and Food Waste.

Valorization of lignocellulosic biomass and food residues to obtain valuable chemicals is essential to the establishment of a sustainable and biobased economy in the modern world. The latest and greenest generation of ionic liquids (ILs) are deep eutectic solvents (DESs) and natural deep eutectic solvents (NADESs); these have shown great promise for various applications and have attracted considerable attention from researchers who seek versatile solvents with pretreatment, extraction, and catalysis capabilities in biomass- and biowaste-to-bioenergy conversion processes. The present work aimed to review the use of DESs and NADESs in the valorization of biomass and biowaste as pretreatment or extraction solvents or catalysis agents.

Spectroscopic and Computational Study of ZnCl2-Methanol Low-Melting-Temperature Mixtures.

Alcoholic electrolyte mixtures have wide applications in industries. In this study, a series of mixtures composed of ZnCl2 and methanol (MeOH) with ZnCl2 mol % from 6.7 to 25 were prepared, and their spectral, structural, and thermodynamic properties were studied using infrared (IR) spectroscopy, differential scanning calorimetry (DSC), and density functional theory (DFT) calculations. The DFT-assisted analysis of excess spectra, supported by 2D-correlation spectroscopy, led to the identification of the major constituents of ZnCl2-MeOH mixtures, namely, MeOH monomer, MeOH dimer, and ZnCl2-3MeOH complex, produced after dissociation of MeOH trimer which represents the bulk methanol. The Hirshfeld charge analysis showed that in the competition between the O-H···Cl hydrogen bond (H-bond) and Zn ← O coordination bond to transfer charge in ZnCl2-MeOH complexes, the latter always dominates, making MeOH positively charged. The phase diagram of the binary system showed the presence of V-shaped glass transition temperatures (Tg), characteristic of low-melting mixture solvents (LoMMSs). The present study provides insights into the microscopic properties of the system and sheds light on the understanding of the general principles to prepare deep-eutectic solvents (DESs) or LoMMSs using inorganic salts and alcoholic compounds.

Quantum chemical calculations on dissolution of dimethylformamide in ethaline.

Deep-eutectic solvents (DESs) gained attention of researchers as green solvents. Making binary mixtures of DESs with appropriate cosolvents is a strategy to obtain more favorable mixtures. Here, structural features and hydrogen bonding (H-bonding) properties of binary mixtures containing ethaline (ETH) DES, (choline chloride (ChCl):2 ethylene glycol (EG)) with N,N-dimethylformamide (DMF) are reported. Such investigations are carried out by density functional theory (DFT) calculations. The results show that in ETH-DMF mixtures, DMF molecules can hardly overcome the strong Columbic interaction and doubly ionic H-bonds between the ions Ch+ and Cl- or the ionic H-bonds between Ch+ and EG. Upon EG addition to ChCl to obtain ETH or DMF addition to ETH, the Cl- … Ch+ connectivity decreases, implying charge delocalization from Cl- to other components rather than Ch+. This is supported by the blue shift of Ch+ hydroxyl observed in the calculated infrared spectra.

Structural Properties and Hydrogen-Bonding Interactions in Binary Mixtures Containing a Deep-Eutectic Solvent and Acetonitrile.

Deep-eutectic solvents (DESs) are a new class of green solvents. Here, we report the hydrogen bonding and structural properties of the archetypal DES ethaline, a mixture of choline chloride (ChCl) and ethylene glycol (EG) of a 1:2 molar ratio, and its pseudo-binary mixtures with acetonitrile. The investigations were carried out employing Fourier-transform infrared (FTIR) spectroscopy combined with quantum chemical calculations. Excess and two-dimensional (2D)-correlation spectroscopies were used to identify favorable species in the solutions and to explore the heterogeneity. The results show that the mixing process is the transformation from ethaline and CH3CN dimer to the complexes of ethaline-1CH3CN and ethaline-2CH3CN, together with the increased percentages of the EG dimer, EG trimer, and CH3CN monomer with respect to their total amounts in the mixtures. Theoretical calculations show that, for ChCl, the positive charge is located at the methyl groups and methylenes, rendering their ability to form hydrogen bonds. Adding CH3CN to ethaline can hardly break apart the doubly ionic hydrogen bonds between Ch+ and Cl-. The cosolvent molecules mainly surround the core structure of ethaline, forming noncovalent hydrogen bonds with hydroxyl groups of EG/Ch+ but not Cl-. These in-depth studies on the properties of ethaline and CH3CN/CD3CN mixed solvents may shed light on exploring their applications.

Local Acid Strength of Solutions and Its Quantitative Evaluation Using Excess Infrared Nitrile Probes.

We propose the concept of local acidity in condensed-phase chemistry in this work. The feature is demonstrated in trifluoroethanol (TFE) by employing two Fourier-transform infrared spectroscopy (FTIR) nitrile probes, acetonitrile (CH3CN) and benzonitrile (PhCN). Specifically, three positive excess peaks were found in the binary systems composed of TFE and a probe using excess spectroscopy. To characterize the local acidity quantitatively, we have tried to correlate the wavenumbers of the positive excess peaks of the probes and the pKa values in water of a series of XH-containing compounds (X = O, N, and C). Good linear relationships were discovered. Accordingly, three different pKa values of TFE were determined based on the three positive excess infrared peaks, which are attributed to the monomer, dimer, and trimer of TFE with the help of quantum-chemical calculations. The concept of local acidity and its quantitative evaluation enrich our knowledge of acid-base chemistry and will shed light on a better understanding of microstructures of solutions.