Clock-linked genes underlie seasonal migratory timing in a diurnal raptor.

Seasonal migration is a dynamic natural phenomenon that allows organisms to exploit favourable habitats across the annual cycle. While the morphological, physiological and behavioural changes associated with migratory behaviour are well characterized, the genetic basis of migration and its link to endogenous biological time-keeping pathways are poorly understood. Historically, genome-wide research has focused on genes of large effect, whereas many genes of small effect may work together to regulate complex traits like migratory behaviour. Here, we explicitly relax stringent outlier detection thresholds and, as a result, discover how multiple biological time-keeping genes are important to migratory timing in an iconic raptor species, the American kestrel (Falco sparverius). To validate the role of candidate loci in migratory timing, we genotyped kestrels captured across autumn migration and found significant associations between migratory timing and genetic variation in metabolic and light-input pathway genes that modulate biological clocks (top1, phlpp1, cpne4 and peak1). Further, we demonstrate that migrating individuals originated from a single panmictic source population, suggesting the existence of distinct early and late migratory genotypes (i.e. chronotypes). Overall, our results provide empirical support for the existence of a within-population-level polymorphism in genes underlying migratory timing in a diurnally migrating raptor.

Mercury contamination in Idaho bald eagles, Haliaeetus leucocephalus.

Because mercury contamination is potentially threatening to bald eagle (Haliaeetus leucocephalus) populations, we collected molted feathers at nests to determine the level of contamination in bald eagles in the state of Idaho, USA. Eagle feathers contained measurable amounts of cadmium (Cd), chromium (Cr), selenium (Se), lead (Pb), as well as mercury (Hg). Cadmium, Cr, Se, and Pb levels averaged 0.17, 4.68, 2.02, and 1.29 mg/kg dry weight, respectively, and were at or below concentrations indicated as causing reproductive failure in bald eagles. Mercury contamination was found to be the highest averaging 18.74 mg/kg dry weight. Although a concentration of only 7.5 mg/kg dry weight Hg in bird feathers can cause reduced productivity and even sterility, all of the eagles we sampled bred successfully and the population of bald eagles continues to grow annually throughout the state.

CONTRASTING HABITAT ASSOCIATIONS OF SAGEBRUSH-STEPPE SONGBIRDS IN THE INTERMOUNTAIN WEST.

Sagebrush (Artemisia spp.) steppe is one of North America's most imperiled ecosystems, as the result of many factors including grazing, development, fire, and invasion of exotic plants. Threats to sagebrush steppe are expected to increase because of climate change and further human development. Many songbirds use sagebrush steppe opportunistically, but a few obligate species are dependent on it. To quantify the habitat associations of three sagebrush obligates, the Sage Thrasher (Oreoscoptes montanus), Sagebrush Sparrow (Artemisiospiza nevadensis), and Brewer's Sparrow (Spizella breweri), and nine other songbird species that use this habitat, we surveyed across a broad region of Idaho. At each of 104 sites, we selected three plots, one each in relatively poor, moderate, and good condition, defined qualitatively by the cover of native shrubs. We quantified bird abundance by point counts, described the habitat at these points by a line-intercept method, and at each plot calculated the fraction of a circle (radius 1 km) covered in shrubs or grassland. We compared two-scale occupancy models based on these data by the information-theoretic approach. According to the models, our qualitative assessment of habitat condition within a site distinguished birds' use of relatively good habitat from their use of poor habitats only, not from those in moderate condition. Thus the sagebrush-obligate species may tolerate some local habitat degradation, at least up to some unidentified threshold. Occurrence of all three sagebrush obligates correlated well with one or more characteristics of sagebrush such as its cover, height, or heterogeneity in height. They differed in the Sage Thrasher being most sensitive to sagebrush cover, the Sagebrush Sparrow being found more often at lower elevations, and the Brewer's Sparrow being less sensitive to ground cover. The nine other species evaluated were less or negatively associated with attributes of sagebrush. On the basis of these results, we suggest that the three sagebrush obligates are best conserved by promoting shrublands over a broad range of elevations, containing both sagebrush and other shrubs in patches of mixed height, and minimizing invasive annual grasses.