Dispersion quality of single-walled carbon nanotubes reveals the recognition sequence of DNA.

The specific recognition between DNA and single-walled carbon nanotubes (SWCNTs) has enabled wide applications, especially in the chiral sorting of SWCNTs. However, the molecular recognition mechanism has not been fully understood. In our work, various DNA-SWCNT dispersions were prepared by the ultrasonic dispersion method, and characterized by UV absorption spectroscopy, fluorescence emission spectroscopy, zeta potential measurement, SDBS exchange kinetics and computer simulation. The effect of DNA sequence on the structure and properties of hybrid molecules was analyzed. Data analysis showed that DNA with specific recognition had better dispersion quality of the corresponding SWCNT, which means that higher content of monodispersed SWCNTs was obtained. The high-quality dispersion of the DNA-SWCNT pair was attributed to the stronger binding between DNA and SWCNT, resulting in a tighter conformation of DNA on the SWCNT surface and a larger zeta potential of DNA-SWCNT hybrids. Consequently, DNA-SWCNT dispersions of the recognition pair exhibited better stability against salt and stronger fluorescence emission intensity. However, the correlation between specific recognition and DNA coverage on SWCNT was not observed. This work gives more insight into the recognition mechanism between DNA and SWCNTs.

Ion competition in condensed DNA arrays in the attractive regime.

Physical origin of DNA condensation by multivalent cations remains unsettled. Here, we report quantitative studies of how one DNA-condensing ion (Cobalt(3+) Hexammine, or Co(3+)Hex) and one nonDNA-condensing ion (Mg(2+)) compete within the interstitial space in spontaneously condensed DNA arrays. As the ion concentrations in the bath solution are systematically varied, the ion contents and DNA-DNA spacings of the DNA arrays are determined by atomic emission spectroscopy and x-ray diffraction, respectively. To gain quantitative insights, we first compare the experimentally determined ion contents with predictions from exact numerical calculations based on nonlinear Poisson-Boltzmann equations. Such calculations are shown to significantly underestimate the number of Co(3+)Hex ions, consistent with the deficiencies of nonlinear Poisson-Boltzmann approaches in describing multivalent cations. Upon increasing the concentration of Mg(2+), the Co(3+)Hex-condensed DNA array expands and eventually redissolves as a result of ion competition weakening DNA-DNA attraction. Although the DNA-DNA spacing depends on both Mg(2+) and Co(3+)Hex concentrations in the bath solution, it is observed that the spacing is largely determined by a single parameter of the DNA array, the fraction of DNA charges neutralized by Co(3+)Hex. It is also observed that only ∼20% DNA charge neutralization by Co(3+)Hex is necessary for spontaneous DNA condensation. We then show that the bath ion conditions can be reduced to one variable with a simplistic ion binding model, which is able to describe the variations of both ion contents and DNA-DNA spacings reasonably well. Finally, we discuss the implications on the nature of interstitial ions and cation-mediated DNA-DNA interactions.

Electrostatically driven interactions between hybrid DNA-carbon nanotubes.

Single-stranded DNA is able to wrap around single-wall carbon nanotubes (CNT) and form stable DNA-CNT hybrids that are highly soluble in solution. Here we report quantitative measurements and analysis of the interactions between DNA-CNT hybrids at low salts. Condensation of DNA-CNT hybrids by neutral osmolytes leads to liquid crystalline phases, and varying the osmotic pressure modulates the interhybrid distance that is determined by x-ray diffraction. Thus obtained force-distance dependencies of DNA-CNT hybrids show a remarkable resemblance to that of double-stranded DNA with differences that can be largely accounted for by their different diameters. This establishes their common physical nature of electrostatically driven interactions. Quantitative modeling further reveals the roles of hydration in mediating the interhybrid forces within the last nanometer of surface separation. This study also suggests the utility of osmotic pressure to control DNA-CNT assemblies at subnanometer precision.

Phase separation in mixtures of ionic liquids and water.

The phase separation of ionic liquids (ILs) in water is studied by laser light scattering (LLS). For the ILs with longer alkyl chains, such as [C(8)mim]BF(4) and [C(6)mim]BF(4) (mim = methylimidazolium), macroscopic phase separation occurs in the mixture with water. LLS also reveals the coexistence of the mesoscopic phase, the size of which is in the order of 100-800 nm. In aqueous mixtures of ILs with shorter alkyl chains, such as [C(4)mim]BF(4), only the mesoscopic phase exists. The mesoscopic phase can be effectively removed by filtration through a 0.22 µm filter. However, it reforms with time and can be enhanced by lowering the temperature, thus indicating that it is controlled by thermodynamics. The degree of mesoscopic phase separation can be used to evaluate the miscibility of ILs with water. This study helps to optimize the applications of ILs in related fields, as well as the recycling of ILs in the presence of water.

Polymer mixtures with enhanced compatibility and extremely low viscosity used as DNA separation media.

Poor compatibility was the major drawback of polymer mixtures when used as DNA separation media. Using poly(ethylene oxide)-b-poly(N, N-dimethylacrylamide) (PEO(44)-b-PDMA(88)) and PEO (M(w): 1.3 MDa) as an example, we demonstrated the concept that the compatibility was significantly improved when mixing a homopolymer with its copolymer. Laser light scattering indicated that the major interaction between PEO and PEO-b-PDMA in dilute solution was the weak hydrodynamic interaction, which showed almost no effect on the viscosity and the static scattering pattern. In semidilute or concentrated solution, viscosity measurement also suggested good compatibility between the two components. When tested as DNA separation medium by CE, the viscosity of the mixture was extremely low, only 5 cP for 5.0 m/v% PEO-b-PDMA+0.1 m/v% PEO at 25 degrees C. The performance on DNA separation could be tuned by varying the concentration of each component as well as the component ratio. Good separation on both dsDNA and ssDNA was achieved.

Structures and dimensions of micelle-templated nanoporous silicas derived from swollen spherical micelles of temperature-dependent size.

Subambient temperatures are employed in Pluronic-block-copolymer-templated syntheses of many large-pore silicas: SBA-15 (2-D hexagonal with cylindrical mesopores), FDU-12 (face-centered cubic with spherical mesopores), nanotubes and hollow nanospheres. Herein, the origin of a significant temperature dependence of the unit-cell parameter and pore diameter of silicas templated by swollen micelles of Pluronics under subambient conditions was elucidated. The temperature dependence of size of swollen spherical micelles of Pluronic F127 (EO106PO70EO106) in 2 M HCl solution was studied in 12-25 °C range using dynamic light scattering and was correlated with structure types, unit-cell sizes and pore sizes of silicas synthesized at four silica-precursor/Pluronic ratios with a swelling agent (toluene, ethylbenzene). The increase in size of swollen micelles with temperature decrease was paralleled by the increase in the unit-cell size and pore diameter, even if the micelle shape changed in the process of formation of the micelle-templated silica. The decrease in the silica-precursor/Pluronic F127 ratio at constant temperature triggered a succession of phases, including SBA-15 - nanotube sequence that may involve an intermediate nanotube bundle structure, which is uncommon and potentially useful. The temperature decrease also led to a succession of phases, including FDU-12 - SBA-15, hollow nanospheres - nanotube bundles, and nanotubes - SBA-15 sequences.

Active control of surface properties and aggregation behavior in amino acid-based Gemini surfactant systems.

Two types of Gemini surfactants containing a disulfide bond in the spacer, sodium dilauroyl cystine (SDLC) and sodium didecamino cystine (SDDC), were synthesized, and their surface properties and aggregation behavior in aqueous solution were studied by means of surface tension measurements, dynamic light scattering (DLS), transmission electron microscopy (TEM), and fluorescence. During the transition of the Gemini surfactants to their corresponding monomers through the reduction of disulfide bonds, the surface tensions of their aqueous solutions, as well as their aggregation behavior, changed greatly. The reduction of SDLC and SDDC led to disruption of the vesicle, and the oxidation of corresponding monomers to Gemini surfactants led to vesicle re-formation. These results demonstrated the control of surface properties and aggregation behavior by the reversible transition between the Gemini surfactant and its monomer via reduction/oxidation reactions.

Responsive polymer-fluorescent carbon nanoparticle hybrid nanogels for optical temperature sensing, near-infrared light-responsive drug release, and tumor cell imaging.

Fluorescent carbon nanoparticles (FCNPs) have been successfully immobilized into poly(N-isopropylacrylamide-co-acrylamide) [poly(NIPAM-AAm)] nanogels based on one-pot precipitation copolymerization of NIPAM monomers with hydrogen bonded FCNP-AAm complex monomers in water. The resultant poly(NIPAM-AAm)-FCNP hybrid nanogels can combine functions from each building block for fluorescent temperature sensing, cell imaging, and near-infrared (NIR) light responsive drug delivery. The FCNPs in the hybrid nanogels not only emit bright and stable photoluminescence (PL) and exhibit up-conversion PL properties, but also increase the loading capacity of the nanogels for curcumin drug molecules. The reversible thermo-responsive swelling/shrinking transition of the poly(NIPAM-AAm) nanogel can not only modify the physicochemical environment of the FCNPs to manipulate the PL intensity for sensing the environmental temperature change, but also regulate the releasing rate of the loaded anticancer drug. In addition, the FCNPs embedded in the nanogels can convert the NIR light to heat, thus an exogenous NIR irradiation can further accelerate the drug release and enhance the therapeutic efficacy. The hybrid nanogels can overcome cellular barriers to enter the intracellular region and light up the mouse melanoma B16F10 cells upon laser excitation. The demonstrated hybrid nanogels with nontoxic and optically active FCNPs immobilized in responsive polymer nanogels are promising for the development of a new generation of multifunctional materials for biomedical applications.

Capsules with a hierarchical shell structure assembled by aminoglycosides and DNA via the kinetic path.

Aminoglycosides are capable of expelling water molecules when forming a complex with DNA via electrostatic interaction. The "water-proof" nature of the complex leads to the formation of capsules, which possess hierarchical shell structures with a smooth and rigid outer layer and a viscoelastic inner layer.

Kinetic study on the reentrant condensation of oligonucleotide in trivalent salt solution.

The reentrant condensation of 21-bp oligonucleotide in the presence of spermidine was investigated by laser light scattering and capillary electrophoresis. 21-bp oligonucleotide showed a bimodal distribution in 1 × TE buffer, with the slow mode being the characteristic diffusion of polyelectrolyte in solution without enough salt. At the fixed spermidine concentration, the reentry of oligonucleotide underwent aggregation, phase separation, and disassociation in sequence with time, and the kinetics was extremely slow. For example, it took more than 1200 h (50 days) for the reentry to complete at 21 mM spermidine. Higher spermidine concentration led to faster kinetics. After reentry, the slow mode disappeared, and the charges of oligonucleotide were at least partially neutralized. No prominent charge inversion was observed. The kinetics of oligonucleotide reentry in the presence of spermidine gained insight in the interactions of polyelectrolyte in aqueous solution.

Characterizing DNA condensation and conformational changes in organic solvents.

Organic solvents offer a new approach to formulate DNA into novel structures suitable for gene delivery. In this study, we examined the in situ behavior of DNA in N, N-dimethylformamide (DMF) at low concentration via laser light scattering (LLS), TEM, UV absorbance and Zeta potential analysis. Results revealed that, in DMF, a 21bp oligonucleotide remained intact, while calf thymus DNA and supercoiled plasmid DNA were condensed and denatured. During condensation and denaturation, the size was decreased by a factor of 8-10, with calf thymus DNA forming spherical globules while plasmid DNA exhibited a toroid-like conformation. In the condensed state, DNA molecules were still able to release the counterions to be negatively charged, indicating that the condensation was mainly driven by the excluded volume interactions. The condensation induced by DMF was reversible for plasmid DNA but not for calf thymus DNA. When plasmid DNA was removed from DMF and resuspended in an aqueous solution, the DNA was quickly regained a double stranded configuration. These findings provide further insight into the behavior and condensation mechanism of DNA in an organic solvent and may aid in developing more efficient non-viral gene delivery systems.