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1.
World J Microbiol Biotechnol ; 36(7): 98, 2020 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-32601748

RESUMO

Aspergillus carbonarius is an efficient producer of organic acids with great potential for bio-based production of organic acids. In this study, we identified a gene f2kp encoding the enzyme 6-phosphofructo-2-kinase known as an allosteric regulator of the glycolytic flux and investigated its role in the production of organic acid. The strategy was to examine the impact of citric acid and malic acid production by overexpressing and disrupting f2kp, respectively. The overexpressing transformants expressed f2kp at higher level than the wild type, whereas no expression of f2kp was detected in the knockout transformants. Citric acid and malic acid production by the knockout strains decreased sharply along with a significant lower sugar consumption, though the overexpressing transformants produced similar amounts of citric acid and malic acid as the wild type. We conclude that 6-phosphofructo-2-kinase has an important regulatory role for the glycolytic flux and organic acid production in A. carbonarius.


Assuntos
Ácidos/metabolismo , Aspergillus/genética , Aspergillus/metabolismo , Compostos Orgânicos/metabolismo , Fosfofrutoquinase-2/genética , Fosfofrutoquinase-2/metabolismo , Aspergillus/enzimologia , Ácido Cítrico/metabolismo , Regulação Fúngica da Expressão Gênica , Técnicas de Inativação de Genes , Genes Fúngicos/genética , Malatos/metabolismo , Transcriptoma
2.
BMC Biotechnol ; 19(1): 72, 2019 11 04.
Artigo em Inglês | MEDLINE | ID: mdl-31684928

RESUMO

BACKGROUND: In filamentous fungi, transport of organic acids across the mitochondrial membrane is facilitated by active transport via shuttle proteins. These transporters may transfer different organic acids across the membrane while taking others the opposite direction. In Aspergillus niger, accumulation of malate in the cytosol can trigger production of citric acid via the exchange of malate and citrate across the mitochondrial membrane. Several mitochondrial organic acid transporters were recently studied in A. niger showing their effects on organic acid production. RESULTS: In this work, we studied another citric acid producing fungus, Aspergillus carbonarius, and identified by genome-mining a putative mitochondrial transporter MtpA, which was not previously studied, that might be involved in production of citric acid. This gene named mtpA encoding a putative oxaloacetate transport protein was expressed constitutively in A. carbonarius based on transcription analysis. To study its role in organic acid production, we disrupted the gene and analyzed its effects on production of citric acid and other organic acids, such as malic acid. In total, 6 transformants with gene mtpA disrupted were obtained and they showed secretion of malic acid at the expense of citric acid production. CONCLUSION: A putative oxaloacetate transporter gene which is potentially involved in organic acid production by A. carbonarius was identified and further investigated on its effects on production of citric acid and malic acid. The mtpA knockout strains obtained produced less citric acid and more malic acid than the wild type, in agreement with our original hypothesis. More extensive studies should be conducted in order to further reveal the mechanism of organic acid transport as mediated by the MtpA transporter.


Assuntos
Aspergillus/metabolismo , Ácido Cítrico/metabolismo , Engenharia Metabólica/métodos , Proteínas Mitocondriais/metabolismo , Oxaloacetatos/metabolismo , Malatos/metabolismo
3.
Microb Cell Fact ; 16(1): 43, 2017 Mar 14.
Artigo em Inglês | MEDLINE | ID: mdl-28288640

RESUMO

BACKGROUND: C4-dicarboxylic acids, including malic acid, fumaric acid and succinic acid, are valuable organic acids that can be produced and secreted by a number of microorganisms. Previous studies on organic acid production by Aspergillus carbonarius, which is capable of producing high amounts of citric acid from varieties carbon sources, have revealed its potential as a fungal cell factory. Earlier attempts to reroute citric acid production into C4-dicarboxylic acids have been with limited success. RESULTS: In this study, a glucose oxidase deficient strain of A. carbonarius was used as the parental strain to overexpress a native C4-dicarboxylate transporter and the gene frd encoding fumarate reductase from Trypanosoma brucei individually and in combination. Impacts of the introduced genetic modifications on organic acid production were investigated in a defined medium and in a hydrolysate of wheat straw containing high concentrations of glucose and xylose. In the defined medium, overexpression of the C4-dicarboxylate transporter alone and in combination with the frd gene significantly increased the production of C4-dicarboxylic acids and reduced the accumulation of citric acid, whereas expression of the frd gene alone did not result in any significant change of organic acid production profile. In the wheat straw hydrolysate after 9 days of cultivation, similar results were obtained as in the defined medium. High amounts of malic acid and succinic acid were produced by the same strains. CONCLUSIONS: This study demonstrates that the key to change the citric acid production into production of C4-dicarboxylic acids in A. carbonarius is the C4-dicarboxylate transporter. Furthermore it shows that the C4-dicarboxylic acid production by A. carbonarius can be further increased via metabolic engineering and also shows the potential of A. carbonarius to utilize lignocellulosic biomass as substrates for C4-dicarboxylic acid production.


Assuntos
Aspergillus/genética , Aspergillus/metabolismo , Ácido Cítrico/metabolismo , Transportadores de Ácidos Dicarboxílicos/genética , Transportadores de Ácidos Dicarboxílicos/metabolismo , Ácidos Dicarboxílicos/metabolismo , Regulação para Cima , Biomassa , Meios de Cultura/química , Glucose/metabolismo , Glucose Oxidase/genética , Glucose Oxidase/metabolismo , Lignina/metabolismo , Malatos/metabolismo , Engenharia Metabólica/métodos , Polissacarídeos/metabolismo , Succinato Desidrogenase/genética , Triticum/metabolismo , Trypanosoma brucei brucei/enzimologia , Trypanosoma brucei brucei/genética , Xilose/metabolismo
4.
Appl Microbiol Biotechnol ; 100(4): 1799-1809, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26521243

RESUMO

Aspergillus saccharolyticus exhibits great potential as a cell factory for industrial production of dicarboxylic acids. In the analysis of the organic acid profile, A. saccharolyticus was cultivated in an acid production medium using two different pH conditions. The specific activities of the enzymes, pyruvate carboxylase (PYC), malate dehydrogenase (MDH), and fumarase (FUM), involved in the reductive tricarboxylic acid (rTCA) branch, were examined and compared in cells harvested from the acid production medium and a complete medium. The results showed that ambient pH had a significant impact on the pattern and the amount of organic acids produced by A. saccharolyticus. The wild-type strain produced higher amount of malic acid and succinic acid in the pH buffered condition (pH 6.5) compared with the pH non-buffered condition. The enzyme assays showed that the rTCA branch was active in the acid production medium as well as the complete medium, but the measured enzyme activities were different depending on the media. Furthermore, a soluble NADH-dependent fumarate reductase gene (frd) from Trypanosoma brucei was inserted and expressed in A. saccharolyticus. The expression of the frd gene led to an enhanced production of succinic acid in frd transformants compared with the wild-type in both pH buffered and pH non-buffered conditions with highest amount produced in the pH buffered condition (16.2 ± 0.5 g/L). This study demonstrates the feasibility of increasing succinic acid production through the cytosolic reductive pathway by genetic engineering in A. saccharolyticus.


Assuntos
Aspergillus/enzimologia , Aspergillus/metabolismo , Expressão Gênica , Succinato Desidrogenase/genética , Succinato Desidrogenase/metabolismo , Ácido Succínico/metabolismo , Trypanosoma brucei brucei/enzimologia , Aspergillus/genética , Meios de Cultura/química , Concentração de Íons de Hidrogênio , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Trypanosoma brucei brucei/genética
5.
J Ind Microbiol Biotechnol ; 43(8): 1139-47, 2016 08.
Artigo em Inglês | MEDLINE | ID: mdl-27169528

RESUMO

The global regulatory protein LaeA is known for regulating the production of many kinds of secondary metabolites in Aspergillus species, as well as sexual and asexual reproduction, and morphology. In Aspergillus carbonarius, it has been shown that LaeA regulates production of ochratoxin. We have investigated the regulatory effect of LaeA on production of citric acid and cellulolytic enzymes in A. carbonarius. Two types of A. carbonarius strains, having laeA knocked out or overexpressed, were constructed and tested in fermentation. The knockout of laeA significantly decreased the production of citric acid and endoglucanases, but did not reduce the production of beta-glucosidases or xylanases. The citric acid accumulation was reduced with 74-96 % compared to the wild type. The endoglucanase activity was reduced with 51-78 %. Overexpression of LaeA seemed not to have an effect on citric acid production or on cellulose or xylanase activity.


Assuntos
Aspergillus/metabolismo , Celulases/metabolismo , Ácido Cítrico/metabolismo , Metiltransferases/fisiologia , Aspergillus/enzimologia , Aspergillus/genética , Fermentação , Metiltransferases/genética
6.
World J Microbiol Biotechnol ; 32(4): 57, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26925619

RESUMO

Aspergillus carbonarius exhibits excellent abilities to utilize a wide range of carbon sources and to produce various organic acids. In this study, wheat straw hydrolysate containing high concentrations of glucose and xylose was used for organic acid production by A. carbonarius. The results indicated that A. carbonarius efficiently co-consumed glucose and xylose and produced various types of organic acids in hydrolysate adjusted to pH 7. The inhibitor tolerance of A. carbonarius to the hydrolysate at different pH values was investigated and compared using spores and recycled mycelia. This comparison showed a slight difference in the inhibitor tolerance of the spores and the recycled mycelia based on their growth patterns. Moreover, the wild-type and a glucose oxidase deficient (Δgox) mutant were compared for their abilities to produce organic acids using the hydrolysate and a defined medium. The two strains showed a different pattern of organic acid production in the hydrolysate where the Δgox mutant produced more oxalic acid but less citric acid than the wild-type, which was different from the results obtained in the defined medium This study demonstrates the feasibility of using lignocellulosic biomass for the organic acid production by A. carbonarius.


Assuntos
Aspergillus/crescimento & desenvolvimento , Ácidos Carboxílicos/metabolismo , Glucose/metabolismo , Triticum/química , Xilose/metabolismo , Biomassa , Estudos de Viabilidade , Fermentação , Concentração de Íons de Hidrogênio , Hidrólise , Micélio/crescimento & desenvolvimento , Esporos Fúngicos/crescimento & desenvolvimento
7.
J Ind Microbiol Biotechnol ; 42(11): 1533-45, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26403577

RESUMO

Aspergillus carbonarius has a potential as a cell factory for production of various organic acids. In this study, the organic acid profile of A. carbonarius was investigated under different cultivation conditions. Moreover, two heterologous genes, pepck and ppc, which encode phosphoenolpyruvate carboxykinase in Actinobacillus succinogenes and phosphoenolpyruvate carboxylase in Escherichia coli, were inserted individually and in combination in A. carbonarius to enhance the carbon flux toward the reductive TCA branch. Results of transcription analysis and measurement of enzyme activities of phosphoenolpyruvate carboxykinase and phosphoenolpyruvate carboxylase in the corresponding single and double transformants demonstrated that the two heterologous genes were successfully expressed in A. carbonarius. The production of citric acid increased in all the transformants in both glucose- and xylose-based media at pH higher than 3 but did not increase in the pH non-buffered cultivation compared with the wild type.


Assuntos
Actinobacillus/enzimologia , Aspergillus/metabolismo , Ácido Cítrico/metabolismo , Escherichia coli/enzimologia , Fosfoenolpiruvato Carboxiquinase (ATP)/metabolismo , Fosfoenolpiruvato Carboxilase/metabolismo , Actinobacillus/genética , Aspergillus/efeitos dos fármacos , Aspergillus/genética , Reatores Biológicos , Ciclo do Carbono , Escherichia coli/genética , Glucose/metabolismo , Glucose/farmacologia , Concentração de Íons de Hidrogênio , Fosfoenolpiruvato Carboxiquinase (ATP)/genética , Fosfoenolpiruvato Carboxilase/genética , Transformação Genética , Xilose/metabolismo , Xilose/farmacologia
8.
J Ind Microbiol Biotechnol ; 41(4): 733-9, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24570325

RESUMO

Aspergillus carbonarius accumulates xylitol when it grows on D-xylose. In fungi, D-xylose is reduced to xylitol by the NAD(P)H-dependent xylose reductase (XR). Xylitol is then further oxidized by the NAD(+)-dependent xylitol dehydrogenase (XDH). The cofactor impairment between the XR and XDH can lead to the accumulation of xylitol under oxygen-limiting conditions. Most of the XRs are NADPH dependent and contain a conserved Ile-Pro-Lys-Ser motif. The only known naturally occurring NADH-dependent XR (from Candida parapsilosis) carries an arginine residue instead of the lysine in this motif. In order to overcome xylitol accumulation in A. carbonarius a Lys-274 to Arg point mutation was introduced into the XR with the aim of changing the specificity toward NADH. The effect of the genetic engineering was examined in fermentation for citric acid production and xylitol accumulation by using D-xylose as the sole carbon source. Fermentation with the mutant strain showed a 2.8-fold reduction in xylitol accumulation and 4.5-fold increase in citric acid production compared to the wild-type strain. The fact that the mutant strain shows decreased xylitol levels is assumed to be associated with the capability of the mutated XR to use the NADH generated by the XDH, thus preventing the inhibition of XDH by the high levels of NADH and ensuring the flux of xylose through the pathway. This work shows that enhanced production of citric acid can be achieved using xylose as the sole carbon source by reducing accumulation of other by-products, such as xylitol.


Assuntos
Aldeído Redutase/genética , Aspergillus/enzimologia , Ácido Cítrico/metabolismo , Mutação Puntual , Xilitol/metabolismo , Aldeído Redutase/metabolismo , Aspergillus/genética , Aspergillus/metabolismo , Candida/enzimologia , D-Xilulose Redutase/metabolismo , Fermentação , NAD/metabolismo , NADP/metabolismo , Xilose/metabolismo
9.
Food Chem Toxicol ; 182: 114118, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37863384

RESUMO

The popularity of quinoa seeds has increased in the last decade due to their high nutritional value and natural gluten-free composition. Consumption of new proteins may pose a risk of introducing new allergies. In the present study the immunogenicity and sensitising capacity of quinoa proteins were assessed in a dose-response experiment in Brown Norway rats in comparison to proteins from spinach and peanut. Cross-reactivity between quinoa proteins and known allergens was evaluated by in silico analyses followed by analyses with 11 selected protein extracts and their anti-sera by means of ELISAs and immunoblotting. Further, an in vitro simulated gastro-duodenal digestion was performed. Quinoa proteins were found to have an inherent medium to high immunogenicity and sensitising capacity, being able to induce specific IgG1 and IgE levels higher than spinach but lower than peanut and elicit reactions of clinical relevance similar to peanut. Quinoa proteins were generally shown to resist digestion and retain capacity to bind quinoa-specific antibodies. Quinoa proteins were shown to be cross-reactive with peanut and tree nut allergens as high sequence homology and antibody cross-binding were demonstrated. Present study suggests that quinoa pose a medium to high level of allergenicity that should be further investigated in human studies.


Assuntos
Chenopodium quinoa , Fabaceae , Hipersensibilidade a Amendoim , Ratos , Animais , Humanos , Alérgenos , Imunoglobulina E , Nozes , Arachis , Proteínas de Plantas
10.
Can J Microbiol ; 58(9): 1035-46, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22906186

RESUMO

The newly discovered fungal species Aspergillus saccharolyticus was found to produce a culture broth rich in ß-glucosidase activity. In this present work, the main ß-glucosidase of A. saccharolyticus responsible for the efficient hydrolytic activity was identified, isolated, and characterized. Ion exchange chromatography was used to fractionate the culture broth, yielding fractions with high ß-glucosidase activity and only 1 visible band on an SDS-PAGE gel. Mass spectrometry analysis of this band gave peptide matches to ß-glucosidases from aspergilli. Through a polymerase chain reaction approach using degenerate primers and genome walking, a 2919 bp sequence encoding the 860 amino acid BGL1 polypeptide was determined. BGL1 of A. saccharolyticus has 91% and 82% identity with BGL1 from Aspergillus aculeatus and BGL1 from Aspergillus niger , respectively, both belonging to Glycoside Hydrolase family 3. Homology modeling studies suggested ß-glucosidase activity with preserved retaining mechanism and a wider catalytic pocket compared with other ß-glucosidases. The bgl1 gene was heterologously expressed in Trichoderma reesei QM6a, purified, and characterized by enzyme kinetics studies. The enzyme can hydrolyze cellobiose, p-nitrophenyl-ß-d-glucoside, and cellodextrins. The enzyme showed good thermostability, was stable at 50 °C, and at 60 °C it had a half-life of approximately 6 h.


Assuntos
Aspergillus/enzimologia , Modelos Moleculares , beta-Glucosidase/química , beta-Glucosidase/metabolismo , Sequência de Aminoácidos , Aspergillus/genética , Celobiose/metabolismo , Celulose/análogos & derivados , Celulose/metabolismo , Dextrinas/metabolismo , Meia-Vida , Concentração de Íons de Hidrogênio , Hidrólise , Cinética , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Alinhamento de Sequência , Temperatura , Trichoderma/genética , beta-Glucosidase/genética
11.
Microorganisms ; 10(4)2022 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-35456803

RESUMO

Filamentous fungi are a large and diverse taxonomically group of microorganisms found in all habitats worldwide. They grow as a network of cells called hyphae. Since filamentous fungi live in very diverse habitats, they produce different enzymes to degrade material for their living, for example hydrolytic enzymes to degrade various kinds of biomasses. Moreover, they produce defense proteins (antimicrobial peptides) and proteins for attaching surfaces (hydrophobins). Many of them are easy to cultivate in different known setups (submerged fermentation and solid-state fermentation) and their secretion of proteins and enzymes are often much larger than what is seen from yeast and bacteria. Therefore, filamentous fungi are in many industries the preferred production hosts of different proteins and enzymes. Edible fungi have traditionally been used as food, such as mushrooms or in fermented foods. New trends are to use edible fungi to produce myco-protein enriched foods. This review gives an overview of the different kinds of proteins, enzymes, and peptides produced by the most well-known fungi used as cell factories for different purposes and applications. Moreover, we describe some of the challenges that are important to consider when filamentous fungi are optimized as efficient cell factories.

12.
Int J Syst Evol Microbiol ; 61(Pt 12): 3077-3083, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21335500

RESUMO

A novel species, Aspergillus saccharolyticus sp. nov., belonging to the Aspergillus section Nigri group is described. This species was isolated in Denmark from treated hardwood. Its taxonomic status was determined using a polyphasic taxonomic approach including phenotypic (morphology and extrolite profiles) and molecular (ß-tubulin, internal transcribed spacer and calmodulin gene sequences, and universally primed PCR fingerprinting) analysis. Phenotypic and molecular data enabled this novel species to be clearly distinguished from other black aspergilli. A. saccharolyticus is a uniseriate Aspergillus species that is morphologically similar to Aspergillus japonicus and Aspergillus aculeatus, but has a totally different extrolite profile compared to any known Aspergillus species. The type strain of A. saccharolyticus sp. nov. is CBS 127449(T) (=IBT 28509(T)).


Assuntos
Aspergillus/classificação , Aspergillus/isolamento & purificação , Madeira/microbiologia , Aspergillus/genética , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Dinamarca , Proteínas Fúngicas/genética , Dados de Sequência Molecular , Filogenia
13.
J Eukaryot Microbiol ; 58(4): 310-4, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21518080

RESUMO

Plasmodiophora brassicae is an obligate, biotrophic pathogen causing the club-root disease of crucifers. Despite its importance as a plant pathogen, little is known about P. brassicae at the molecular level as most of its life cycle takes place inside the plant host, and axenic culturing is impossible. Discovery of genes expressed during infection and gene organization are the first steps toward a better understanding of the pathogen-host interaction. Here, suppression subtractive hybridization was used to search for the P. brassicae genes expressed during plant infection. One-hundred and forty ESTs were found of which 49% proved to be P. brassicae genes. Ten novel P. brassicae genes were identified, and the genomic sequences surrounding four of the ESTs were acquired using genome walking. Alignment of the ESTs and the genomic DNA sequences confirmed that P. brassicae genes are intron rich and that the introns are small. These results show that it is possible to discover new P. brassicae genes from a mixed pool of both plant and pathogen cDNA. The results also revealed that some of the P. brassicae genes expressed in Chinese cabbage (Brassica rapa subsp. pekinensis) were identical to the genes expressed in the infection of Arabidopsis plants, indicating that these genes play an important role in P. brassicae infection.


Assuntos
Brassica rapa/parasitologia , Genes de Protozoários , Doenças das Plantas/parasitologia , Plasmodioforídeos/genética , Arabidopsis/parasitologia , Sequência de Bases , Etiquetas de Sequências Expressas , Expressão Gênica , Perfilação da Expressão Gênica , Proteínas de Choque Térmico/genética , Interações Hospedeiro-Parasita , Dados de Sequência Molecular , Proteínas de Protozoários/genética , Alinhamento de Sequência , Análise de Sequência de DNA
14.
Can J Microbiol ; 57(8): 638-50, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21815831

RESUMO

ß-Glucosidase activity plays an essential role for efficient and complete hydrolysis of lignocellulosic biomass. Direct use of fungal fermentation broths can be cost saving relative to using commercial enzymes for production of biofuels and bioproducts. Through a fungal screening program for ß-glucosidase activity, strain AP (CBS 127449, Aspergillus saccharolyticus ) showed 10 times greater ß-glucosidase activity than the average of all other fungi screened, with Aspergillus niger showing second greatest activity. The potential of a fermentation broth of strain AP was compared with the commercial ß-glucosidase-containing enzyme preparations Novozym 188 and Cellic CTec. The fermentation broth was found to be a valid substitute for Novozym 188 in cellobiose hydrolysis. The Michaelis-Menten kinetics affinity constant as well as performance in cellobiose hydrolysis with regard to product inhibition were found to be the same for Novozym 188 and the broth of strain AP. Compared with Novozym 188, the fermentation broth had higher specific activity (11.3 U/mg total protein compared with 7.5 U/mg total protein) and also increased thermostability, identified by the thermal activity number of 66.8 vs. 63.4 °C for Novozym 188. The significant thermostability of strain AP ß-glucosidases was further confirmed when compared with Cellic CTec. The ß-glucosidases of strain AP were able to degrade cellodextrins with an exo-acting approach and could hydrolyse pretreated bagasse to monomeric sugars when combined with Celluclast 1.5L. The fungus therefore showed great potential as an onsite producer for ß-glucosidase activity.


Assuntos
Aspergillus/enzimologia , Celobiose/metabolismo , Celulases/metabolismo , Fermentação , Microbiologia Industrial , Aspergillus/classificação , Aspergillus niger/enzimologia , Biomassa , Celulose/análogos & derivados , Celulose/metabolismo , DNA Fúngico/genética , DNA Espaçador Ribossômico/genética , Dextrinas/metabolismo , Hidrólise , beta-Glucosidase/metabolismo
15.
Environ Microbiol ; 12(3): 649-57, 2010 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-20002135

RESUMO

African and Asian populations of Fusarium spp. (Gibberella fujikuroi species complex) associated with Bakanae of rice (Oryzae sativa L.) were isolated from seeds and characterized with respect to ecology, phylogenetics, pathogenicity and mycotoxin production. Independent of the origin, Fusarium spp. were detected in the different rice seed samples with infection rate ranges that varied from 0.25% to 9%. Four Fusaria (F. andiyazi, F. fujikuroi, F. proliferatum and F. verticillioides) were found associated with Bakanae of rice. While three of the Fusaria were found in both African and Asian seed samples, F. fujikuroi was only detected in seed samples from Asia. Phylogenetic studies showed a broad genetic variation among the strains that were distributed into four different genetic clades. Pathogenicity tests showed that all strains reduced seed germination and possessed varying ability to cause symptoms of Bakanae on rice, some species (i.e. F. fujikuroi) being more pathogenic than others. The ability to produce fumonisins (FB(1) and FB(2)) and gibberellin A3 in vitro also differed according to the Fusarium species. While fumonisins were produced by most of the strains of F. verticillioides and F. proliferatum, gibberellin A3 was only produced by F. fujikuroi. Neither fumonisin nor gibberellin was synthesized by most of the strains of F. andiyazi. These findings provide new information on the variation within the G. fujikuroi species complex associated with rice seed and Bakanae disease.


Assuntos
Ecologia , Fusarium , Variação Genética , Gibberella , Micoses , Oryza/microbiologia , DNA Fúngico/genética , Fumonisinas/metabolismo , Fusarium/classificação , Fusarium/patogenicidade , Fusarium/fisiologia , Gibberella/classificação , Gibberella/patogenicidade , Gibberella/fisiologia , Giberelinas/genética , Giberelinas/metabolismo , Dados de Sequência Molecular , Filogenia , Sementes/genética , Esporos Fúngicos/genética
16.
Plant Dis ; 94(4): 432-438, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30754524

RESUMO

Until now, molecular and biochemical methods have only been used to show whether or not Plasmodiophora brassicae is present in plant or soil samples but not to what extent. Here, in planta quantification of P. brassicae by whole-cell fatty acid (WCFA) measurements and real-time polymerase chain reaction (PCR) was evaluated. Arachidonic acid (ARA, 20:4) was the most abundant fatty acid in resting spores and was only found in infected roots, which indicates a potential of ARA as a biomarker for P. brassicae. A real-time PCR assay was developed using primers designed from the internal transcribed spacer region of the ribosomal DNA. Using these primers, it was possible to detect P. brassicae in infected roots 10 days after germination of plants sown in infested soil. A bioassay showed that the amounts of ARA found by WCFA analysis and the DNA found by real-time PCR in infected plants were well correlated. These measurements also correlated with the soil spore content and the assessed disease incidence and disease severity scores. Therefore, we conclude that WCFA analysis and real-time PCR are good tools for P. brassicae quantification that can be applied to basic studies of the pathogen and in resistance screens.

17.
Mycopathologia ; 169(5): 403-12, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-20101524

RESUMO

Downy mildew is an economically important and widespread disease in quinoa (Chenopodium quinoa) growing areas. Although in many studies Peronospora farinosa is most commonly regarded as the causal agent of the disease, identification and classification of the pathogen remain still uncertain due to its taxonomic confusion. Thirty-six Peronospora isolates from quinoa with different geographic origins including Argentina, Bolivia, Denmark, Ecuador, and Peru were morphologically and molecularly compared with Peronospora species from other Chenopodium species. The morphology of three herbarium specimens was similar to that of P. variabilis, which originated from C. album, characterized by flexuous to curved ultimate branchlets and pedicellated conidia. Phylogenetic analysis based on ITS rDNA sequences also placed the quinoa pathogen within the same clade as P. variabilis. Within the ITS rDNA sequences of the quinoa pathogens, two base substitutions were found, which separated the majority of the Danish isolates from isolates from South America, but no sequence difference was found among the isolates from different cultivars of quinoa. The present results indicate that the pathogen responsible for the quinoa downy mildew is identical to Peronospora variabilis and that it should not be lumped with P. farinosa as claimed previously by most studies.


Assuntos
Chenopodium quinoa/microbiologia , Peronospora/classificação , Doenças das Plantas/microbiologia , DNA de Algas/genética , DNA Espaçador Ribossômico/genética , Dinamarca , Peronospora/citologia , Peronospora/genética , Filogenia , América do Sul
18.
J Basic Microbiol ; 50(1): 104-9, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20175119

RESUMO

In the Andean region of South America downy mildew, caused by Peronospora farinosa, is the most important disease of quinoa (Chenopodium quinoa). Peronospora farinosa, a highly polyphyletic species, occurs on quinoa and wild relatives on all continents. However, very little is known about the geographic diversity of the pathogen. As the interest in quinoa as a novel crop is increasing worldwide, geographical differences in the population structure of the downy mildew pathogen must be taken into consideration in order to design appropriate control strategies under a variety of circumstances. As a step towards understanding the geographic diversity of P. farinosa from quinoa, 40 downy mildew isolates from the Andean highlands and Denmark were characterized using universally primed PCR (UP-PCR). Eight UP-PCR primers were tested. A combined analysis of markers separated the Danish and Andean isolates in two distinct clusters. This study raises new questions about the origin and spread of P. farinosa on quinoa, its geographic diversity and host specificity.


Assuntos
Chenopodium quinoa/microbiologia , Variação Genética , Peronospora/genética , DNA Fúngico/genética , Dinamarca , Genética Populacional , Geografia , Peronospora/classificação , Filogenia , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , América do Sul
19.
Biotechnol Biofuels ; 13(1): 206, 2020 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-33317620

RESUMO

BACKGROUND: Succinic acid has great potential to be a new bio-based building block for deriving a number of value-added chemicals in industry. Bio-based succinic acid production from renewable biomass can provide a feasible approach to partially alleviate the dependence of global manufacturing on petroleum refinery. To improve the economics of biological processes, we attempted to explore possible solutions with a fungal cell platform. In this study, Aspergillus niger, a well-known industrial production organism for bio-based organic acids, was exploited for its potential for succinic acid production. RESULTS: With a ribonucleoprotein (RNP)-based CRISPR-Cas9 system, consecutive genetic manipulations were realized in engineering of the citric acid-producing strain A. niger ATCC 1015. Two genes involved in production of two byproducts, gluconic acid and oxalic acid, were disrupted. In addition, an efficient C4-dicarboxylate transporter and a soluble NADH-dependent fumarate reductase were overexpressed. The resulting strain SAP-3 produced 17 g/L succinic acid while there was no succinic acid detected at a measurable level in the wild-type strain using a synthetic substrate. Furthermore, two cultivation parameters, temperature and pH, were investigated for their effects on succinic acid production. The highest amount of succinic acid was obtained at 35 °C after 3 days, and low culture pH had inhibitory effects on succinic acid production. Two types of renewable biomass were explored as substrates for succinic acid production. After 6 days, the SAP-3 strain was capable of producing 23 g/L and 9 g/L succinic acid from sugar beet molasses and wheat straw hydrolysate, respectively. CONCLUSIONS: In this study, we have successfully applied the RNP-based CRISPR-Cas9 system in genetic engineering of A. niger and significantly improved the succinic acid production in the engineered strain. The studies on cultivation parameters revealed the impacts of pH and temperature on succinic acid production and the future challenges in strain development. The feasibility of using renewable biomass for succinic acid production by A. niger has been demonstrated with molasses and wheat straw hydrolysate.

20.
Mol Ecol ; 18(6): 1282-93, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19226319

RESUMO

Although intensively investigated for biological control of insect pests, little is known about the ecology of the fungal entomopathogenic genus Beauveria in natural or agricultural habitats. In this study, we used molecular phylogenetic and genotypic information to infer species diversity, reproductive potential and genetic structure of Beauveria occurring within a single arable field and bordering hedgerow in Denmark. Isolates were sampled from cultivated field and hedgerow soils, from insects harbouring latent fungal infections, and from the phylloplanes of three plant species common in the hedgerow flora. A nuclear phylogeny of this local Beauveria assemblage resolved seven phylogenetic species, including (i) five phylogenetic species within Beauveria bassiana sensu stricto; (ii) Clade C, a taxonomically uncharacterized species that is morphologically indistinguishable but phylogenetically distant from B. bassiana s.s.; and (iii) Beauveria brongniartii. All seven species were present throughout the hedgerow habitat, including as infections in insects. Significantly, only B. bassiana s.s. phylogenetic species Eu_1 was isolated from tilled soils. Mating type polymerase chain reaction assays demonstrated that all five B. bassiana s.s. phylogenetic species possess bipolar outcrossing mating systems. Of these, only the Eu_1 population contained two mating types; however, a 31:2 skew in MAT1:MAT2 mating types suggests a low frequency of sexual reproduction in this population. The four remaining B. bassiana s.s. phylogenetic species were fixed for single mating types and these populations are evidently clonal. Multilocus microsatellite genotyping revealed polymorphism in all five phylogenetic species of B. bassiana s.s.; however, all show evidence of clonal genetic structure.


Assuntos
Beauveria/genética , Ecossistema , Filogenia , Agricultura , Animais , Beauveria/classificação , DNA Fúngico/genética , Dinamarca , Genes Fúngicos Tipo Acasalamento , Genótipo , Insetos/microbiologia , Repetições de Microssatélites , Plantas/microbiologia , Polimorfismo Genético , Análise de Sequência de DNA , Microbiologia do Solo
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