Pesquisa | Portal de Pesquisa da BVS

1.

A systems genetics resource and analysis of sleep regulation in the mouse.

Diessler, Shanaz; Jan, Maxime; Emmenegger, Yann; Guex, Nicolas; Middleton, Benita; Skene, Debra J; Ibberson, Mark; Burdet, Frederic; Götz, Lou; Pagni, Marco; Sankar, Martial; Liechti, Robin; Hor, Charlotte N; Xenarios, Ioannis; Franken, Paul.

PLoS Biol ; 16(8): e2005750, 2018 08.

Artigo em Inglês | MEDLINE | ID: mdl-30091978

2.

Systems biology of the IMIDIA biobank from organ donors and pancreatectomised patients defines a novel transcriptomic signature of islets from individuals with type 2 diabetes.

Solimena, Michele; Schulte, Anke M; Marselli, Lorella; Ehehalt, Florian; Richter, Daniela; Kleeberg, Manuela; Mziaut, Hassan; Knoch, Klaus-Peter; Parnis, Julia; Bugliani, Marco; Siddiq, Afshan; Jörns, Anne; Burdet, Frédéric; Liechti, Robin; Suleiman, Mara; Margerie, Daniel; Syed, Farooq; Distler, Marius; Grützmann, Robert; Petretto, Enrico; Moreno-Moral, Aida; Wegbrod, Carolin; Sönmez, Anke; Pfriem, Katja; Friedrich, Anne; Meinel, Jörn; Wollheim, Claes B; Baretton, Gustavo B; Scharfmann, Raphael; Nogoceke, Everson; Bonifacio, Ezio; Sturm, Dorothée; Meyer-Puttlitz, Birgit; Boggi, Ugo; Saeger, Hans-Detlev; Filipponi, Franco; Lesche, Mathias; Meda, Paolo; Dahl, Andreas; Wigger, Leonore; Xenarios, Ioannis; Falchi, Mario; Thorens, Bernard; Weitz, Jürgen; Bokvist, Krister; Lenzen, Sigurd; Rutter, Guy A; Froguel, Philippe; von Bülow, Manon; Ibberson, Mark.

Diabetologia ; 61(3): 641-657, 2018 03.

Artigo em Inglês | MEDLINE | ID: mdl-29185012

3.

Avoiding the pitfalls of gene set enrichment analysis with SetRank.

Simillion, Cedric; Liechti, Robin; Lischer, Heidi E L; Ioannidis, Vassilios; Bruggmann, Rémy.

BMC Bioinformatics ; 18(1): 151, 2017 Mar 04.

Artigo em Inglês | MEDLINE | ID: mdl-28259142

4.

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.

Dorier, Julien; Crespo, Isaac; Niknejad, Anne; Liechti, Robin; Ebeling, Martin; Xenarios, Ioannis.

BMC Bioinformatics ; 17(1): 410, 2016 Oct 06.

Artigo em Inglês | MEDLINE | ID: mdl-27716031

5.

The SwissLipids knowledgebase for lipid biology.

Aimo, Lucila; Liechti, Robin; Hyka-Nouspikel, Nevila; Niknejad, Anne; Gleizes, Anne; Götz, Lou; Kuznetsov, Dmitry; David, Fabrice P A; van der Goot, F Gisou; Riezman, Howard; Bougueleret, Lydie; Xenarios, Ioannis; Bridge, Alan.

Bioinformatics ; 31(17): 2860-6, 2015 Sep 01.

Artigo em Inglês | MEDLINE | ID: mdl-25943471

6.

Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches.

Guex, Nicolas; Crespo, Isaac; Bron, Sylvian; Ifticene-Treboux, Assia; Faes-Van't Hull, Eveline; Kharoubi, Solange; Liechti, Robin; Werffeli, Patricia; Ibberson, Mark; Majo, Francois; Nicolas, Michäel; Laurent, Julien; Garg, Abhishek; Zaman, Khalil; Lehr, Hans-Anton; Stevenson, Brian J; Rüegg, Curzio; Coukos, George; Delaloye, Jean-François; Xenarios, Ioannis; Doucey, Marie-Agnès.

PLoS Comput Biol ; 11(3): e1004050, 2015 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-25768678

7.

SourceData: a semantic platform for curating and searching figures.

Liechti, Robin; George, Nancy; Götz, Lou; El-Gebali, Sara; Chasapi, Anastasia; Crespo, Isaac; Xenarios, Ioannis; Lemberger, Thomas.

Nat Methods ; 14(11): 1021-1022, 2017 10 31.

Artigo em Inglês | MEDLINE | ID: mdl-29088127

8.

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Le Martelot, Gwendal; Canella, Donatella; Symul, Laura; Migliavacca, Eugenia; Gilardi, Federica; Liechti, Robin; Martin, Olivier; Harshman, Keith; Delorenzi, Mauro; Desvergne, Béatrice; Herr, Winship; Deplancke, Bart; Schibler, Ueli; Rougemont, Jacques; Guex, Nicolas; Hernandez, Nouria; Naef, Felix.

PLoS Biol ; 10(11): e1001442, 2012.

Artigo em Inglês | MEDLINE | ID: mdl-23209382

9.

ExPASy: SIB bioinformatics resource portal.

Artimo, Panu; Jonnalagedda, Manohar; Arnold, Konstantin; Baratin, Delphine; Csardi, Gabor; de Castro, Edouard; Duvaud, Séverine; Flegel, Volker; Fortier, Arnaud; Gasteiger, Elisabeth; Grosdidier, Aurélien; Hernandez, Céline; Ioannidis, Vassilios; Kuznetsov, Dmitry; Liechti, Robin; Moretti, Sébastien; Mostaguir, Khaled; Redaschi, Nicole; Rossier, Grégoire; Xenarios, Ioannis; Stockinger, Heinz.

Nucleic Acids Res ; 40(Web Server issue): W597-603, 2012 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-22661580

10.

Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database.

Camps, Jordi; Noël, Floriane; Liechti, Robin; Massenet-Regad, Lucile; Rigade, Sidwell; Götz, Lou; Hoffmann, Caroline; Amblard, Elise; Saichi, Melissa; Ibrahim, Mahmoud M; Pollard, Jack; Medvedovic, Jasna; Roider, Helge G; Soumelis, Vassili.

Cancer Res ; 83(3): 363-373, 2023 02 03.

Artigo em Inglês | MEDLINE | ID: mdl-36459564

11.

Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients.

Bibert, Stéphanie; Guex, Nicolas; Lourenco, Joao; Brahier, Thomas; Papadimitriou-Olivgeris, Matthaios; Damonti, Lauro; Manuel, Oriol; Liechti, Robin; Götz, Lou; Tschopp, Jonathan; Quinodoz, Mathieu; Vollenweider, Peter; Pagani, Jean-Luc; Oddo, Mauro; Hügli, Olivier; Lamoth, Frédéric; Erard, Véronique; Voide, Cathy; Delorenzi, Mauro; Rufer, Nathalie; Candotti, Fabio; Rivolta, Carlo; Boillat-Blanco, Noémie; Bochud, Pierre-Yves.

Front Immunol ; 12: 666163, 2021.

Artigo em Inglês | MEDLINE | ID: mdl-34135895

12.

MIMAS 3.0 is a Multiomics Information Management and Annotation System.

Gattiker, Alexandre; Hermida, Leandro; Liechti, Robin; Xenarios, Ioannis; Collin, Olivier; Rougemont, Jacques; Primig, Michael.

BMC Bioinformatics ; 10: 151, 2009 May 18.

Artigo em Inglês | MEDLINE | ID: mdl-19450266

13.

DynaStI: A Dynamic Retention Time Database for Steroidomics.

Codesido, Santiago; Randazzo, Giuseppe Marco; Lehmann, Fabio; González-Ruiz, Víctor; García, Arnaud; Xenarios, Ioannis; Liechti, Robin; Bridge, Alan; Boccard, Julien; Rudaz, Serge.

Metabolites ; 9(5)2019 Apr 30.

Artigo em Inglês | MEDLINE | ID: mdl-31052310

14.

CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes.

Sclep, Gert; Allemeersch, Joke; Liechti, Robin; De Meyer, Björn; Beynon, Jim; Bhalerao, Rishikesh; Moreau, Yves; Nietfeld, Wilfried; Renou, Jean-Pierre; Reymond, Philippe; Kuiper, Martin Tr; Hilson, Pierre.

BMC Bioinformatics ; 8: 400, 2007 Oct 18.

Artigo em Inglês | MEDLINE | ID: mdl-17945016

15.

Arabidopsis jasmonate signaling pathway.

Gfeller, Aurélie; Liechti, Robin; Farmer, Edward E.

Sci STKE ; 2006(322): cm1, 2006 Feb 14.

Artigo em Inglês | MEDLINE | ID: mdl-16478935

16.

Jasmonate signaling pathway.

Liechti, Robin; Gfeller, Aurélie; Farmer, Edward E.

Sci STKE ; 2006(322): cm2, 2006 Feb 14.

Artigo em Inglês | MEDLINE | ID: mdl-16478936

17.

Jasmonate biochemical pathway.

Liechti, Robin; Farmer, Edward E.

Sci STKE ; 2006(322): cm3, 2006 Feb 14.

Artigo em Inglês | MEDLINE | ID: mdl-16478937

18.

Plasma Dihydroceramides Are Diabetes Susceptibility Biomarker Candidates in Mice and Humans.

Wigger, Leonore; Cruciani-Guglielmacci, Céline; Nicolas, Anthony; Denom, Jessica; Fernandez, Neïké; Fumeron, Frédéric; Marques-Vidal, Pedro; Ktorza, Alain; Kramer, Werner; Schulte, Anke; Le Stunff, Hervé; Liechti, Robin; Xenarios, Ioannis; Vollenweider, Peter; Waeber, Gérard; Uphues, Ingo; Roussel, Ronan; Magnan, Christophe; Ibberson, Mark; Thorens, Bernard.

Cell Rep ; 18(9): 2269-2279, 2017 02 28.

Artigo em Inglês | MEDLINE | ID: mdl-28249170

19.

Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role for Elovl2 in glucose-induced insulin secretion.

Cruciani-Guglielmacci, Céline; Bellini, Lara; Denom, Jessica; Oshima, Masaya; Fernandez, Neïké; Normandie-Levi, Priscilla; Berney, Xavier P; Kassis, Nadim; Rouch, Claude; Dairou, Julien; Gorman, Tracy; Smith, David M; Marley, Anna; Liechti, Robin; Kuznetsov, Dmitry; Wigger, Leonore; Burdet, Frédéric; Lefèvre, Anne-Laure; Wehrle, Isabelle; Uphues, Ingo; Hildebrandt, Tobias; Rust, Werner; Bernard, Catherine; Ktorza, Alain; Rutter, Guy A; Scharfmann, Raphael; Xenarios, Ioannis; Le Stunff, Hervé; Thorens, Bernard; Magnan, Christophe; Ibberson, Mark.

Mol Metab ; 6(4): 340-351, 2017 04.

Artigo em Inglês | MEDLINE | ID: mdl-28377873

20.

Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis.

Crespo, Isaac; Götz, Lou; Liechti, Robin; Coukos, George; Doucey, Marie-Agnès; Xenarios, Ioannis.

NPJ Syst Biol Appl ; 2: 16037, 2016.

Artigo em Inglês | MEDLINE | ID: mdl-28725481

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