Structure and Function of Chromatin Remodelers.

Chromatin remodelers act to regulate multiple cellular processes, such as transcription and DNA repair, by controlling access to genomic DNA. Four families of chromatin remodelers have been identified in yeast, each with non-redundant roles within the cell. There has been a recent surge in structural models of chromatin remodelers in complex with their nucleosomal substrate. These structural studies provide new insight into the mechanism of action for individual chromatin remodelers. In this review, we summarize available data for the structure and mechanism of action of the four chromatin remodeling complex families.

Effects of Batrachochytrium dendrobatidis infection on ion concentrations in the boreal toad Anaxyrus (Bufo) boreas boreas.

Batrachochytrium dendrobatidis causes mortality in various amphibian species including the boreal toad Anaxyrus (Bufo) boreas boreas. The purpose of this study was to determine the physiological effects of this pathogen on experimentally infected boreal toads. Plasma osmolality, sodium, and potassium concentrations were analyzed to evaluate the differences between diseased and non-exposed animals. Infected animals with clinical signs of chytridiomycosis had significantly lower plasma osmolality, sodium, and potassium levels than non-infected animals (p < 0.06). On average, clinically infected animals housed in an aquatic environment had sodium and potassium levels of 60.1 (SE = 9.7) and 2.06 (SE = 0.32) mmol l(-1), respectively. These ion levels were significantly lower than the negative controls (sodium = 115.0 mmol l(-1), potassium = 3.7 mmol l(-1)) and consistent with the clinical signs observed in affected animals. We propose that infection with B. dendrobatidis results in an electrolyte disorder in boreal toads.

Structural Insights into the Evolutionarily Conserved BAF Chromatin Remodeling Complex.

The switch/sucrose nonfermentable (SWI/SNF) family of proteins acts to regulate chromatin accessibility and plays an essential role in multiple cellular processes. A high frequency of mutations has been found in SWI/SNF family subunits by exome sequencing in human cancer, and multiple studies support its role in tumor suppression. Recent structural studies of yeast SWI/SNF and its human homolog, BAF (BRG1/BRM associated factor), have provided a model for their complex assembly and their interaction with nucleosomal substrates, revealing the molecular function of individual subunits as well as the potential impact of cancer-associated mutations on the remodeling function. Here we review the structural conservation between yeast SWI/SNF and BAF and examine the role of highly mutated subunits within the BAF complex.

Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids.

Cell-free protein synthesis has emerged as a powerful approach for expanding the range of genetically encoded chemistry into proteins. Unfortunately, efforts to site-specifically incorporate multiple non-canonical amino acids into proteins using crude extract-based cell-free systems have been limited by release factor 1 competition. Here we address this limitation by establishing a bacterial cell-free protein synthesis platform based on genomically recoded Escherichia coli lacking release factor 1. This platform was developed by exploiting multiplex genome engineering to enhance extract performance by functionally inactivating negative effectors. Our most productive cell extracts enabled synthesis of 1,780 ± 30 mg/L superfolder green fluorescent protein. Using an optimized platform, we demonstrated the ability to introduce 40 identical p-acetyl-L-phenylalanine residues site specifically into an elastin-like polypeptide with high accuracy of incorporation ( ≥ 98%) and yield (96 ± 3 mg/L). We expect this cell-free platform to facilitate fundamental understanding and enable manufacturing paradigms for proteins with new and diverse chemistries.