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1.
Proc Biol Sci ; 291(2021): 20240337, 2024 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-38628124

RESUMO

Darwin attributed the absence of species transitions in the fossil record to his hypothesis that speciation occurs within isolated habitat patches too geographically restricted to be captured by fossil sequences. Mayr's peripatric speciation model added that such speciation would be rapid, further explaining missing evidence of diversification. Indeed, Eldredge and Gould's original punctuated equilibrium model combined Darwin's conjecture, Mayr's model and 124 years of unsuccessfully sampling the fossil record for transitions. Observing such divergence, however, could illustrate the tempo and mode of evolution during early speciation. Here, we investigate peripatric divergence in a Miocene stickleback fish, Gasterosteus doryssus. This lineage appeared and, over approximately 8000 generations, evolved significant reduction of 12 of 16 traits related to armour, swimming and diet, relative to its ancestral population. This was greater morphological divergence than we observed between reproductively isolated, benthic-limnetic ecotypes of extant Gasterosteus aculeatus. Therefore, we infer that reproductive isolation was evolving. However, local extinction of G. doryssus lineages shows how young, isolated, speciating populations often disappear, supporting Darwin's explanation for missing evidence and revealing a mechanism behind morphological stasis. Extinction may also account for limited sustained divergence within the stickleback species complex and help reconcile speciation rate variation observed across time scales.


Assuntos
Isolamento Reprodutivo , Smegmamorpha , Animais , Fósseis , Ecossistema , Smegmamorpha/anatomia & histologia , Fenótipo
2.
Mol Phylogenet Evol ; 190: 107965, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37977500

RESUMO

Poeciliids (Cyprinodontiformes: Poeciliidae), commonly known as livebearers, are popular fishes in the aquarium trade (e.g., guppies, mollies, swordtails) that are widely distributed in the Americas, with 274 valid species in 27 genera. This group has undergone various taxonomic changes recently, spurred by investigations using traditional genetic markers. Here we used over 1,000 ultraconserved loci to infer the relationships within Poeciliidae in the first attempt at understanding their diversification based on genome-scale data. We explore gene tree discordance and investigate potential incongruence between concatenation and coalescent inference methods. Our aim is to examine the influence of incomplete lineage sorting and reticulate evolution on the poeciliids' evolutionary history and how these factors contribute to the observed gene tree discordace. Our concatenated and coalescent phylogenomic inferences recovered four major clades within Poeciliidae. Most supra-generic level relationships we inferred were congruent with previous molecular studies, but we found some disagreements; the Middle American taxa Phallichthys and Poecilia (Mollienesia) were recovered as non-monophyletic, and unlike other recent molecular studies, we recovered Brachyrhaphis as monophyletic. Our study is the first to provide signatures of reticulate evolution in Poeciliidae at the family level; however, continued finer-scale investigations are needed to understand the complex evolutionary history of the family along with a much-needed taxonomic re-evaluation.


Assuntos
Ciprinodontiformes , Poecilia , Animais , Filogenia , Ciprinodontiformes/genética , Poecilia/genética , Genoma , Marcadores Genéticos
3.
J Fish Biol ; 2024 May 16.
Artigo em Inglês | MEDLINE | ID: mdl-38757464

RESUMO

Phylogenetic analyses of mitochondrial and nuclear data of 31 specimens of Cyphocharax from trans-Andean rivers support the presence of one lineage of Cyphocharax aspilos in Lago Maracaibo and three cryptic lineages of Cyphocharax magdalenae: (1) Cauca-Magdalena and Ranchería, (2) León and Atrato, and (3) Chucunaque-Tuira, Santa María, and Chiriquí basins of Central America. Results suggest that the Serranía del Perijá facilitated Late Miocene cladogenetic events, whereas post-Isthmian C. magdalenae expansion was enabled by gene flow across the lower Magdalena valley and Central American lowlands. Time-calibrated phylogenetics indicate that the C. magdalenae colonized lower Central America in the Pliocene (3.7 MYA; Ma), the divergence Atrato-Magdalena occurred in Late Pliocene (3.0 Ma) and the split Ranchería-Magdalena during the Middle Pleistocene (1.3 Ma). Updated geographic distribution data support the hypothesis that the Cordillera de Talamanca functions as a barrier to northward expansion of C. magdalenae in Central America.

4.
Am Nat ; 199(6): E197-E210, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-35580227

RESUMO

AbstractMultifunctionality is often framed as a core constraint of evolution, yet many evolutionary transitions involve traits taking on additional functions. Mouthbrooding, a form of parental care where offspring develop inside a parent's mouth, increases multifunctionality by adding a major function (reproduction) to a structure already serving other vital functions (feeding and respiration). Despite increasing multifunctionality, mouthbrooding has evolved repeatedly from other forms of parental care in at least seven fish families. We hypothesized that mouthbrooding is more likely to evolve in lineages with feeding adaptations that are already advantageous for mouthbrooding. We tested this hypothesis in Neotropical cichlids, where mouthbrooding has evolved four or five times, largely within winnowing clades, providing several pairwise comparisons between substrate-brooding and mouthbrooding sister taxa. We found that the mouthbrooding transition rate was 15 times higher in winnowing than in nonwinnowing clades and that mouthbrooders and winnowers overlapped substantially in their buccal cavity morphologies, which is where offspring are incubated. Species that exhibit one or both of these behaviors had larger, more curved buccal cavities, while species that exhibit neither behavior had narrow, cylindrical buccal cavities. Given the results we present here, we propose a new conceptual model for the evolution of mouthbrooding, integrating the roles of multifunctional morphology and the environment. We suggest that functional transitions like mouthbrooding offer a different perspective on multifunctionality: increasing constraints in one trait may release them for another, generating new evolutionary opportunities.


Assuntos
Ciclídeos , Aclimatação , Adaptação Fisiológica , Animais , Ciclídeos/genética , Humanos , Filogenia , Reprodução
5.
Ecol Appl ; 31(5): e02320, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-33650187

RESUMO

Plastic is pervasive in modern economies and ecosystems. Freshwater fish ingest microplastics (i.e., particles <5 mm), but no studies have examined historical patterns of their microplastic consumption. Measuring the patterns of microplastic pollution in the past is critical for predicting future trends and for understanding the relationship between plastics in fish and the environment. We measured microplastics in digestive tissues of specimens collected from the years 1900-2017 and preserved in museum collections. We collected new fish specimens in 2018, along with water and sediment samples. We selected four species: Micropterus salmoides (largemouth bass), Notropis stramineus (sand shiner), Ictalurus punctatus (channel catfish), and Neogobius melanostomus (round goby) because each was well represented in museum collections, are locally abundant, and collected from urban habitats. For each individual, we dissected the digestive tissue from esophagus to anus, subjected tissue to peroxide oxidation, examined particles under a dissecting microscope, and used Raman spectroscopy to characterize the particles' chemical composition. No microplastics were detected in any fish prior to 1950. From mid-century to 2018, microplastic concentrations showed a significant increase when data from all fish were considered together. All detected particles were fibers, and represented plastic polymers (e.g., polyester) along with mixtures of natural and synthetic textiles. For the specimens collected in 2018, microplastics in fish and sediment showed similar patterns across study sites, while water column microplastics showed no differences among locations. Overall, plastic pollution in common freshwater fish species is increasing and pervasive across individuals and species, and is likely related to changes in environmental concentrations. Museum specimens are an overlooked source for assessing historical patterns of microplastic pollution, and for predicting future trends in freshwater fish, thereby helping to sustain the health of commercial and recreational fisheries worldwide.


Assuntos
Microplásticos , Poluentes Químicos da Água , Animais , Ecossistema , Monitoramento Ambiental , Água Doce , Humanos , Museus , Plásticos , Poluentes Químicos da Água/análise
6.
J Fish Biol ; 99(3): 970-979, 2021 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-33991111

RESUMO

Diadromous fishes can exhibit interesting evolutionary and population-level patterns given their use of freshwater and marine environments as part of their life histories. The River goby genus Awaous are prominent members of riverine ichthyofaunas and occur throughout Atlantic and Pacific slopes of the Americas from the southern United States to Ecuador and Brazil. Here we study the widespread and polymorphic Awaous banana complex to assess phylogeographic patterns and test previous hypotheses that all populations of this species in the Americas belong to the same species. Analysis of sequence data based on the mitochondrial cytochrome oxidase I gene shows multiple clades within the Atlantic and Pacific basins, which correspond to previously described species. Additionally, haplotype analysis demonstrates unique and unconnected networks between these species. Within these clades we document biogeographic patterns that are congruent with results of other co-occurring diadromous species, as well as a novel biogeographic pattern for the region. Our results support the recognition of distinct species of Awaous in the Atlantic (A. banana and A. tajasica) and Pacific (A. transandeanus) basins. These results are concordant with previously established morphological characters permitting the separation of these species.


Assuntos
Peixes , Animais , DNA Mitocondrial/genética , Peixes/genética , Variação Genética , Filogenia , Filogeografia , Rios
7.
J Fish Biol ; 97(4): 1273-1275, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-32779729

RESUMO

Here we report the first record of the Mayan cichlid, Mayaheros urophthalmus, occurring on an offshore island 70 km from the mainland, the most distant record from the mainland to date. Specimens were collected during several ichthyological surveys on the island of Guanaja, Honduras in November 2019. Mayan cichlids are euryhaline fishes that perform very well in fresh, brackish and marine waters. It has been hypothesized that their high tolerance to salinity and potential of using costal waterways has facilitated the colonization and expansion of M. urophthalmus.


Assuntos
Ciclídeos/fisiologia , Tolerância ao Sal/fisiologia , Migração Animal , Animais , Região do Caribe , Honduras , Ilhas , Salinidade
9.
Syst Biol ; 66(6): 881-895, 2017 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-28334176

RESUMO

Ostariophysi is a superorder of bony fishes including more than 10,300 species in 1100 genera and 70 families. This superorder is traditionally divided into five major groups (orders): Gonorynchiformes (milkfishes and sandfishes), Cypriniformes (carps and minnows), Characiformes (tetras and their allies), Siluriformes (catfishes), and Gymnotiformes (electric knifefishes). Unambiguous resolution of the relationships among these lineages remains elusive, with previous molecular and morphological analyses failing to produce a consensus phylogeny. In this study, we use over 350 ultraconserved element (UCEs) loci comprising 5 million base pairs collected across 35 representative ostariophysan species to compile one of the most data-rich phylogenies of fishes to date. We use these data to infer higher level (interordinal) relationships among ostariophysan fishes, focusing on the monophyly of the Characiformes-one of the most contentiously debated groups in fish systematics. As with most previous molecular studies, we recover a non-monophyletic Characiformes with the two monophyletic suborders, Citharinoidei and Characoidei, more closely related to other ostariophysan clades than to each other. We also explore incongruence between results from different UCE data sets, issues of orthology, and the use of morphological characters in combination with our molecular data. [Conserved sequence; ichthyology; massively parallel sequencing; morphology; next-generation sequencing; UCEs.].


Assuntos
Caraciformes/classificação , Caraciformes/genética , Sequência Conservada/genética , Filogenia , Animais
10.
Cladistics ; 31(2): 177-188, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-34758579

RESUMO

Although attempts to understand Central American freshwater fish provincialism date to the 1960s, early efforts lacked the wealth of distributional data now available. Biogeographic work on Central American freshwater fishes has been largely descriptive and regional, and lacked a broader synthesis. Here we use parsimony analysis of endemicity (PAE) to elucidate faunistic relationships between major drainages and to delineate areas of endemism. We then perform a Brooks parsimony analysis (BPA) on the resulting areas. The PAE recovered a primary division between four Pacific and six Atlantic slope areas of endemism. In contrast, the BPA recovered two Central American geographic clades, one sharing a history with North America and the other with South America. Fish diversity is uneven across Central America, with greater diversity in areas adjacent to the more species-rich regions of North and South America. In northern and nuclear Central America, the paucity of ostariophysan freshwater fishes such as catfishes and characins (groups that dominate adjacent regions) contrasts with high species richness of poeciliids and cichlids. Results of this study are consistent with Myer's hypothesis that poeciliids and cichlids dispersed to Northern or Nuclear Middle America early in the Cenozoic, long before the Plio-Pleistocene rise of the Isthmus of Panama.

11.
Biol Rev Camb Philos Soc ; 99(3): 901-927, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38205676

RESUMO

In biogeography, vicariance and long-distance dispersal are often characterised as competing scenarios. However, they are related concepts, both relying on collective geological, ecological, and phylogenetic evidence. This is illustrated by freshwater fishes, which may immigrate to islands either when freshwater connections are temporarily present and later severed (vicariance), or by unusual means when ocean gaps are crossed (long-distance dispersal). Marine barriers have a strong filtering effect on freshwater fishes, limiting immigrants to those most capable of oceanic dispersal. The roles of vicariance and dispersal are debated for freshwater fishes of the Greater Antilles. We review three active hypotheses [Cretaceous vicariance, Greater Antilles-Aves Ridge (GAARlandia), long-distance dispersal] and propose long-distance dispersal to be an appropriate model due to limited support for freshwater fish use of landspans. Greater Antillean freshwater fishes have six potential source bioregions (defined from faunal similarity): Northern Gulf of México, Western Gulf of México, Maya Terrane, Chortís Block, Eastern Panamá, and Northern South America. Faunas of the Greater Antilles are composed of taxa immigrating from many of these bioregions, but there is strong compositional disharmony between island and mainland fish faunas (>90% of Antillean species are cyprinodontiforms, compared to <10% in Northern Gulf of México and Northern South America, and ≤50% elsewhere), consistent with a hypothesis of long-distance dispersal. Ancestral-area reconstruction analysis indicates there were 16 or 17 immigration events over the last 51 million years, 14 or 15 of these by cyprinodontiforms. Published divergence estimates and evidence available for each immigration event suggests they occurred at different times and by different pathways, possibly with rafts of vegetation discharged from rivers or washed to sea during storms. If so, ocean currents likely provide critical pathways for immigration when flowing from one landmass to another. On the other hand, currents create dispersal barriers when flowing perpendicularly between landmasses. In addition to high salinity tolerance, cyprinodontiforms collectively display a variety of adaptations that could enhance their ability to live with rafts (small body size, viviparity, low metabolism, amphibiousness, diapause, self-fertilisation). These adaptations likely also helped immigrants establish island populations after arrival and to persist long term thereafter. Cichlids may have used a pseudo bridge (Nicaragua Rise) to reach the Greater Antilles. Gars (Lepisosteidae) may have crossed the Straits of Florida to Cuba, a relatively short crossing that is not a barrier to gene flow for several cyprinodontiform immigrants. Indeed, widespread distributions of Quaternary migrants (Cyprinodon, Gambusia, Kryptolebias), within the Greater Antilles and among neighbouring bioregions, imply that long-distance dispersal is not necessarily inhibitory for well-adapted species, even though it appears to be virtually impossible for all other freshwater fishes.


Assuntos
Distribuição Animal , Peixes , Água Doce , Animais , Peixes/fisiologia , Peixes/genética , Peixes/classificação , Filogeografia
12.
Mol Ecol ; 22(15): 4014-28, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23848064

RESUMO

Phylogeographic inference has typically relied on analyses of data from one or a few genes to provide estimates of demography and population histories. While much has been learned from these studies, all phylogeographic analysis is conditioned on the data, and thus, inferences derived from data that represent a small sample of the genome are unavoidably tenuous. Here, we demonstrate one approach for moving beyond classic phylogeographic research. We use sequence capture probes and Illumina sequencing to generate data from >400 loci in order to infer the phylogeographic history of Salix melanopsis, a riparian willow with a disjunct distribution in coastal and the inland Pacific Northwest. We evaluate a priori phylogeographic hypotheses using coalescent models for parameter estimation, and the results support earlier findings that identified post-Pleistocene dispersal as the cause of the disjunction in S. melanopsis. We also conduct a series of model selection exercises using IMa2, Migrate-n and ∂a∂i. The resulting ranking of models indicates that refugial dynamics were complex, with multiple regions in the inland regions serving as the source for postglacial colonization. Our results demonstrate that new sources of data and new approaches to data analysis can rejuvenate phylogeographic research by allowing for the identification of complex models that enable researchers to both identify and estimate the most relevant parameters for a given system.


Assuntos
Modelos Genéticos , Salix/genética , Seleção Genética , Evolução Molecular , Variação Genética , Noroeste dos Estados Unidos , Filogeografia , Análise de Sequência de DNA
13.
Zootaxa ; 3608: 440-56, 2013 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-24614482

RESUMO

The inland fish fauna of El Salvador and its distribution was originally described in 1925 by Samuel Hildebrand. That work has been the main source of information for freshwater fishes of El Salvador up to today. Based on the combination of an intensive literature review, electronic database searches, re-identification of museum specimens, and fieldwork, we hereby provide an updated checklist of the inland fishes of El Salvador. This checklist provides distributional data at the Salvadoran hydrographical and political (by department) levels. The checklist is systematically arranged at the ordinal and familial level and then alphabetically therein. The freshwater fish fauna of El Salvador includes 101 species divided into 64 genera, 29 families, and 14 orders. According to their supposed tolerance to salinity, 73% of these species are peripheral, 23% secondary, and only 4% are primary freshwater fishes. One species is endemic to the country, Amatitlania coatepeque. The low number of primary freshwater fishes and endemics is comparable to the Central American Pacific slope in particular, as well as northern Central America in general.


Assuntos
Peixes/fisiologia , Distribuição Animal , Animais , Biodiversidade , El Salvador , Água Doce
14.
PLoS One ; 18(1): e0279924, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36662755

RESUMO

Hyphessobrycon is one of the most species rich and widely distributed genera in the family Characidae, with more than 160 species ranging from Veracruz, Mexico to Mar Chiquita Lagoon in Buenos Aires, Argentina. The majority of Hyphessobrycon diversity shows a cis-Andean distribution; only nine species are trans-Andean including H. compressus (Meek 1908). It is well established that Hyphessobrycon is not monophyletic but it has been suggested that natural groups can be identified within the larger Hyphessobrycon species group. In this study, we tested the monophyly of trans-Andean species of Hyphessobrycon and investigated the placement of H. compressus. We inferred the first phylogenomic hypothesis of trans-Andean Hyphessobrycon that includes nearly complete taxonomic sampling (eight of nine valid species) using ultraconserved elements (UCEs). We analyzed 75% (1682 UCEs), 90% (1258 UCEs), and 95% (838 UCEs) complete data matrices, and inferred phylogenomic hypotheses under concatenation and coalescent approaches. In all cases, we recovered the monophyly of trans-Andean Hyphessobrycon inclusive of H. compressus, strong support for three species groups, and evidence of cryptic diversity within the widespread H. compressus and H. condotensis. We used our phylogenomic hypothesis to investigate the biogeographic history of Hyphessobrycon in Middle America. Our ancestral range estimation analysis suggests a single event of cis- to trans-Andean colonization followed by stepwise colonization from the Pacific slope of northwestern South America (Chocó block) to northern Middle America (Maya block). Our work supports the recognition of the trans-Andean species as Hyphessobrycon sensu stricto and provides an evolutionary template to examine morphological characters that will allow us to better understand the diversity of Hyphessobrycon in Middle America.


Assuntos
Characidae , Animais , Filogenia , América do Sul , Colômbia , América do Norte
15.
Zootaxa ; 5376(1): 1-89, 2023 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-38220798

RESUMO

Based on a combination of intensive literature review, electronic database searches, re-identification of museum specimens, and fieldwork, we provide an updated checklist of the continental fishes of Nicaragua. This checklist, systematically arranged at the ordinal and familial level, includes nomenclatural revisions, distributional information, conservation status, and when appropriate, cross-references to previous lists and revisionary works on the fish fauna of the country and region (Central America); illustrations and descriptions to the family level and color photographs of some representative species are also included. According to our results, the native Nicaraguan continental fish fauna is composed of 244 species, divided into 111 genera, 45 families, 24 orders, and two classes; increasing by 60 (i.e., 32.6%) the number of species originally reported by Villa (1982; i.e., the most comprehensive work published to date). The majority of the Nicaraguan native continental fish species, according to their supposed tolerance to salinity, are peripheral (68.9%), followed by secondary freshwater fishes (23.8%), and primary freshwater fishes (only 7.4%). Fish diversity in the 19 major river basins ranged between 21 and 90 species (mean = 58 species, median = 60); the Escondido (Es; 87 species), in the Atlantic, and the Pacfico de Nicaragua (PN; 90), in the Pacific, presented the highest species richness. Most species (188) are restricted to elevations between 0 and 100 meters above sea level (masl); only a few species (18), in contrast, were found at elevations greater than 500 masl (up to 780 masl). Fourteen species in this revision are listed as endemic to Nicaragua. Regarding their conservation status, 22 species (9.0%) are categorized, according to the International Union for Conservation of Nature (IUCN), as Data Deficient, 186 (76.2%) as Least Concern, and seven (2.9%) as Near Threatened; while 24 species (9.8%) are listed as Threatened, thirteen (5.3%) as Vulnerable, two (0.8%) as Endangered, and nine (3.7%) as Critically Endangered. Five species (2.0%) have not yet been evaluated. Six exotic species are also reported. Our results provide a framework for future taxonomic and biogeographic works on fishes from this country and region (Central America), particularly by providing up-to-date knowledge on nomenclature and distributions. In addition, the data provided in this revision will help to monitor fish distributional changes in the future due to human introductions and global change and will aid in conservation decisions concerning Nicaraguan continental fishes.


Assuntos
Água Doce , Rios , Humanos , Animais , Nicarágua , Peixes
16.
PLoS One ; 17(1): e0262687, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35100283

RESUMO

Poeciliopsis (Cyprinodontiformes: Poeciliidae) is a genus comprised of 25 species of freshwater fishes. Several well-known taxonomic uncertainties exist within the genus, especially in relation to the taxonomic status of Poeciliopsis pleurospilus and P. gracilis. However, to date, no studies have been conducted to specifically address the taxonomic status of these two species. The goal of this study was to examine the taxonomic validity of P. pleurospilus and P. gracilis using genomic data (ddRADseq) in phylogenetic, population genetic, and species delimitation frameworks. Multiple analyses support the recognition of both taxa as distinct species and also permits us to revise their respective distributions. A species delimitation analysis indicates that P. pleurospilus and P. gracilis are distinct species, each of which consists of two distinct lineages that are geographically structured. Phylogenetic and population genetic analyses provide clear evidence that individuals of P. gracilis are distributed north and west of the Isthmus of Tehuantepec in both Pacific and Atlantic river systems in Mexico, whereas individuals of P. pleurospilus are distributed in both Atlantic and Pacific river systems south and east of the Isthmus of Tehuantepec, from southern Mexico to Honduras.


Assuntos
Ciprinodontiformes/classificação , Ciprinodontiformes/genética , DNA/genética , Genética Populacional , Filogenia , Polimorfismo de Nucleotídeo Único , Animais , DNA/análise , Genômica
17.
Genome Biol Evol ; 13(8)2021 08 03.
Artigo em Inglês | MEDLINE | ID: mdl-34272856

RESUMO

Choosing among types of genomic markers to be used in a phylogenomic study can have a major influence on the cost, design, and results of a study. Yet few attempts have been made to compare categories of next-generation sequence markers limiting our ability to compare the suitability of these different genomic fragment types. Here, we explore properties of different genomic markers to find if they vary in the accuracy of component phylogenetic trees and to clarify the causes of conflict obtained from different data sets or inference methods. As a test case, we explore the causes of discordance between phylogenetic hypotheses obtained using a novel data set of ultraconserved elements (UCEs) and a recently published exon data set of the cichlid tribe Heroini. Resolving relationships among heroine cichlids has historically been difficult, and the processes of colonization and diversification in Middle America and the Greater Antilles are not yet well understood. Despite differences in informativeness and levels of gene tree discordance between UCEs and exons, the resulting phylogenomic hypotheses generally agree on most relationships. The independent data sets disagreed in areas with low phylogenetic signal that were overwhelmed by incomplete lineage sorting and nonphylogenetic signals. For UCEs, high levels of incomplete lineage sorting were found to be the major cause of gene tree discordance, whereas, for exons, nonphylogenetic signal is most likely caused by a reduced number of highly informative loci. This paucity of informative loci in exons might be due to heterogeneous substitution rates that are problematic to model (i.e., computationally restrictive) resulting in systematic errors that UCEs (being less informative individually but more uniform) are less prone to. These results generally demonstrate the robustness of phylogenomic methods to accommodate genomic markers with different biological and phylogenetic properties. However, we identify common and unique pitfalls of different categories of genomic fragments when inferring enigmatic phylogenetic relationships.


Assuntos
Ciclídeos , Animais , Ciclídeos/genética , Éxons , Genoma , Genômica , Filogenia
18.
Ecol Evol ; 11(23): 17519-17526, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34938526

RESUMO

Biological patterns across latitudinal gradients elucidate a number of striking natural clines from which numerous processes can be further explored. The trade-off between reproduction and somatic maintenance and growth represents a suite of life-history traits with variable energy allocation and potential latitudinal patterns. Specifically, male sexually dimorphic traits in female choice systems represent one such reproductive investment constrained by resource acquisition and subsequent allocation. Latitudinal variation in sexual dimorphism has been suggested although the relationship between dimorphic traits and latitude are conflicting. Here, we test alternative hypotheses regarding this pattern using two broadly distributed vertebrates exhibiting sexually dimorphic traits. We hypothesized that the exaggeration of dimorphic traits correlates with latitude, with males having exaggerated sexually dimorphic traits at either higher or lower latitudes. Results indicate that male sexually dimorphic traits are exaggerated at lower latitudes while relative gonopodium size in Poecilia latipinna was larger at higher latitudes. This pattern may be a result of lower latitude populations experiencing greater population densities and longer access to resources that could manifest in females more intensively selecting for higher quality males in lower latitudes. Experimental work should address this pattern and investigate mechanistic processes.

19.
Mol Phylogenet Evol ; 57(3): 1293-300, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20849962

RESUMO

The genus Vieja represents a group of heroine cichlids (Teleostei: Cichlidae) distributed on the Atlantic and Pacific slopes of North and Central America from southern Mexico to Panama. Sixteen species of Vieja are presently recognized; however, based on long-standing taxonomic problems, the genus itself appears to be weakly defined. A number of different generic designations have been proposed for members of Vieja, and recent systematic studies of heroine cichlids have not specifically addressed the validity of the grouping and have not included all species in the genus. Therefore, the purpose of this study was to assess the monophyly of the genus Vieja by including all nominal species in the genus using the mitochondrial encoded cytochrome b gene and nuclear S7-1 intron. Results of Maximum Parsimony, Bayesian inference, and topology tests (constraint tree searches and post-burn-in Bayesian filtering) indicate that the genus is not monophyletic as it is currently recognized. The genus Herichthys was recovered as sister to a clade consisting of a number of Vieja species (V. fenestrata, V. guttulata, V. zonata, V. hartwegi, V. bifasciata, V. breidohri, V. argentea, V. regani, V. melanura, V. synspila, and V. maculicauda, as well as Paraneetroplusbulleri). A clade consisting of V. intermedia, V. godmanni, and V. microphthalma was recovered sister to Theraps. Additionally, V. heterospila and V. tuyrensis were recovered outside of Vieja and Herichthys clades. Based on the results of this comprehensive study, we suggest a revised classification of Vieja species.


Assuntos
Ciclídeos/classificação , Evolução Molecular , Filogenia , Animais , Teorema de Bayes , Núcleo Celular/genética , América Central , Ciclídeos/genética , Citocromos b/genética , DNA Mitocondrial/genética , Íntrons , Análise de Sequência de DNA
20.
Zootaxa ; 4881(1): zootaxa.4881.1.6, 2020 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-33311131

RESUMO

A new species of dwarf monocle bream, Parascolopsis akatamae n. sp., is described from the Indo-West Pacific. The new species is distinguished from all other species of Parascolopsis in having 16-19 gill rakers on the first arch, length of forked part of caudal fin 5.8-6.5 times in standard length, eye diameter 1.3-1.8 times in length of the longest dorsal-fin spine, and a pale yellow stripe present from lower edge of the eye to posterior edge of the preopercle. Parascolopsis eriomma (Jordan Richardson, 1909) is morphologically very similar to the new species and the two have been confused with each other for a long time. Therefore, we redescribe P. eriomma based on the holotype and newly collected specimens. In addition, we found that patterns of biofluorescence emission for both species are clearly different. This suggests that their biofluorescence patterns may function in distinguishing each other.


Assuntos
Perciformes , Animais , Peixes , Brânquias , Cauda
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