Establishing the pattern of the vertebrate limb.

The vertebrate limb continues to serve as an influential model of growth, morphogenesis and pattern formation. With this Review, we aim to give an up-to-date picture of how a population of undifferentiated cells develops into the complex pattern of the limb. Focussing largely on mouse and chick studies, we concentrate on the positioning of the limbs, the formation of the limb bud, the establishment of the principal limb axes, the specification of pattern, the integration of pattern formation with growth and the determination of digit number. We also discuss the important, but little understood, topic of how gene expression is interpreted into morphology.

Sonic hedgehog specifies flight feather positional information in avian wings.

Classical tissue recombination experiments performed in the chick embryo provide evidence that signals operating during early limb development specify the position and identity of feathers. Here, we show that Sonic hedgehog (Shh) signalling in the embryonic chick wing bud specifies positional information required for the formation of adult flight feathers in a defined spatial and temporal sequence that reflects their different identities. We also reveal that Shh signalling is interpreted into specific patterns of Sim1 and Zic transcription factor expression, providing evidence of a putative gene regulatory network operating in flight feather patterning. Our data suggest that flight feather specification involved the co-option of the pre-existing digit patterning mechanism and therefore uncovers an embryonic process that played a fundamental step in the evolution of avian flight.

Skeletal muscle differentiation drives a dramatic downregulation of RNA polymerase III activity and differential expression of Polr3g isoforms.

Gene regulatory networks underpinning skeletal muscle determination and differentiation have been extensively investigated, providing molecular insights into how cell lineages are established during development. These studies have exclusively focused on the transcriptome downstream of RNA polymerase II (Pol II). RNA polymerase III (Pol III) drives the production of tRNAs and other small RNAs essential for the flow of genetic information from gene to protein and we have found that a specific isoform of a subunit unique to Pol III is expressed early in the myogenic lineage. This points to the possibility that additional regulatory networks exist to control the production of Pol III transcripts during skeletal muscle differentiation. We describe the differential expression of Polr3g and its alternate isoform Polr3gL during embryonic development and using a custom tRNA microarray, we demonstrate their distinct activity on the synthesis of tRNA isoacceptors. We show that Pol III dependent transcripts are dramatically down-regulated during the differentiation of skeletal muscle, as are mRNAs coding for Pol III associated proteins Brf1 and Brf2, while Polr3gL is up-regulated alongside contractile protein genes. Forcing Polr3g expression in this context results in a partial reversal of myogenic differentiation.

Controlled depolymerisation assessed by analytical ultracentrifugation of low molecular weight chitosan for use in archaeological conservation.

The heterogeneity and molecular weight of a chitosan of low molecular weight (molar mass) and low degree of acetylation (0.1) for potential use as a consolidant for decayed archaeological wood were examined by sedimentation velocity and sedimentation equilibrium in the analytical ultracentrifuge before and after depolymerisation. Sedimentation velocity before depolymerisation revealed a uniform distribution of sedimentation coefficient with little concentration dependence. SEDFIT-MSTAR analysis revealed a weight average molecular weight Mw of (14.2 ± 1.2) kDa, and polydispersity index of ~ 1.2. Further analysis using MULTISIG revealed a distribution of material between 2 and 20 kDa and consistent with the weight average Mw. Controlled depolymerisation using hydrogen peroxide and ultra-violet radiation in an acetic acid medium reduced this to (4.9 ± 0.7) kDa, with a similar polydispersity. The depolymerised material appears to be within the range that has been predicted to fully penetrate into archaeological wood. The consequences for this finding and the use of the analytical ultracentrifuge in wood conservation strategies are considered.

Fgf signalling triggers an intrinsic mesodermal timer that determines the duration of limb patterning.

Complex signalling between the apical ectodermal ridge (AER - a thickening of the distal epithelium) and the mesoderm controls limb patterning along the proximo-distal axis (humerus to digits). However, the essential in vivo requirement for AER-Fgf signalling makes it difficult to understand the exact roles that it fulfils. To overcome this barrier, we developed an amenable ex vivo chick wing tissue explant system that faithfully replicates in vivo parameters. Using inhibition experiments and RNA-sequencing, we identify a transient role for Fgfs in triggering the distal patterning phase. Fgfs are then dispensable for the maintenance of an intrinsic mesodermal transcriptome, which controls proliferation/differentiation timing and the duration of patterning. We also uncover additional roles for Fgf signalling in maintaining AER-related gene expression and in suppressing myogenesis. We describe a simple logic for limb patterning duration, which is potentially applicable to other systems, including the main body axis.

Isoselenocarbonyl complexes.

The salt elimination reactions of [NEt4][Mo(CSe)(CO)2(Tp*)] ([NEt4][2], Tp* = hydrotris(3,5-dimethylpyrazol-1-yl)borate) with a range of metal halide complexes (ClMLn) have been investigated as a possible route to isoselenocarbonyl complexes [Mo(CSeMLn)(CO)2(Tp*)]. Thus the reactions of [NEt4][2] with [RuCl(L)2(η-C5R5)] provide molybdenum-ruthenium derivatives [Mo{CSeRu(L)2(η-C5R5)}(CO)2(Tp*)] (L = PPh3, R = H 4, L = CO, R = Me 5), both of which were structurally characterised. The molybdenum-iron derivative [Mo{CSeFe(CO)2(η-C5H5)}(CO)2(Tp*)] (6) was obtained from [NEt4][2] and [FeCl(CO)2(η-C5H5)] however its formulation currently rests on spectroscopic and microanalytical data. The reaction of [NEt4][2] with [RuH(NCMe)(CO)2(PPh3)2]PF6 affords the structurally characterised hydrido-isoselenocarbonyl complex [Mo{CSeRuH(CO)2(PPh3)2}(CO)2(Tp*)] (7) with no indication of coupling of the hydride and selenocarbonyl ligand.

Identification of inorganic compounds in composite alum-treated wooden artefacts from the Oseberg collection.

Alum-treated wooden artefacts from the Oseberg collection display a great deal of morphological, structural and compositional inhomogeneity. Thus, an in-depth understanding of chemical processes underlying their degradation requires consideration of a variety of local environments. In addition to alum, sources of inorganic compounds include metal parts, corrosion products of which can migrate into the surrounding wood. In order to characterise the inorganic compounds a range of local environments, samples from several locations in a selection of composite objects have been investigated by X-ray diffraction (XRD), Fourier transform infrared (FTIR) spectroscopy, Raman spectroscopy and scanning electron microscopy (SEM)-energy dispersive X-ray spectroscopy (EDS). We have found that corrosion of iron rods used in reconstruction has formed iron(II) sulfates, which have migrated into the alum-treated wood to form sulfates containing combinations of potassium, aluminium, iron(II) and iron(III) cations. Reactions of alum were also evident from the presence of alunite in some samples. Areas with significant abundances of zinc sulfates, zinc sulfide and elemental sulfur were also detected. These results provide a first-time window into the complex array of inorganic species that can be present in such composite alum-treated objects.

Iridium complexes of perimidine-based N-heterocyclic carbene pincer ligands via aminal C-H activation.

The reactions of N,N'-bis(phosphinomethyl)dihydroperimidine pro-ligands H2C(NCH2PR2)2C10H6-1,8 (R = Ph 1a, R = Cy 1b) with iridium(i) substrates have been investigated and shown to readily result in chelate-assisted C-H activation processes. The reaction of 1b with [Ir2Cl2(COE)4] (COE = cyclo-octene) affords the 18-electron iridium(iii) dihydrido complex [IrH2Cl{κ3-C,P,P'-C(NCH2PCy2)2C10H6}], which forms [IrHCl2{κ3-C,P,P'-C(NCH2PCy2)2C10H6}] under acidic (HCl) conditions. In contrast, reaction of 1a with [Ir2Cl2(COD)2] (COD = 1,5-cyclo-octadiene) affords the complex [IrCl(COD){κ2-P,P'-H2C(NCH2PPh2)2C10H6}], thermolysis of which affords cyclo-octene and the pincer-NHC complex [IrCl{κ3-C,P,P'-C(NCH2PPh2)2C10H6}]. The reaction of 1a with two equivalents of [Ir2Cl2(COD)2] provides the binuclear complex [Ir2{µ-H2C(NCH2PPh2)2C10H6}Cl2(COD)2] which is also observed to accumulate and then dissipate during the preceding thermolysis. Related binuclear complexes [M2{µ-H2C(NCH2PPh2)2C10H6}Cl4(η-C5Me5)2] (M = Ir, Rh) which obviate C-H activation were similarly synthesised.

An analysis of MyoD-dependent transcription using CRISPR/Cas9 gene targeting in Xenopus tropicalis embryos.

Myogenic regulatory factors (MRFs) are known to have essential roles in both the establishment and differentiation of the skeletal muscle cell lineage. MyoD is expressed early in the Xenopus mesoderm where it is present and active several hours before the activation of muscle differentiation genes. Previous studies in cultured cells and in Xenopus laevis have identified sets of genes that require MyoD prior to differentiation of skeletal muscle. Here we report results from experiments using CRISPR/Cas9 to target the MyoD gene in the diploid frog Xenopus tropicalis, that are analysed by RNA-seq at gastrula stages. We further investigate our data using cluster analysis to compare developmental expression profiles with that of MyoD and α-cardiac actin, reference genes for skeletal muscle determination and differentiation. Our findings provide an assessment of using founder (F0) Xenopus embryos from CRISPR/Cas9 protocols for transcriptomic analyses and we conclude that although targeted F0 embryos are genetically mosaic for MyoD, there is significant disruption in the expression of a specific set of genes. We discuss candidate target genes in context of their role in the sub-programs of MyoD regulated transcription.

Ruthenium and osmium complexes of dihydroperimidine-based N-heterocyclic carbene pincer ligands.

The reactions of N,N'-bis(phosphinomethyl)dihydroperimidine pro-ligands H2C(NCH2PR2)2C10H6 (R = Cy 1a, R = Ph 1b) with [RuCl2(PPh3)3] give markedly different products. Chelate-assisted double C-H activation in the former affords the perimidinylidene-based N-heterocyclic carbene (per-NHC) pincer complex [RuCl2(OC4H8){κ(3)-P,C,P'-C(NCH2PCy2)2C10H6}] (2), while the latter reaction provides the asymmetric PNP-coordinated complex [RuCl2(PPh3){κ(3)-P,N,P'-CH2(NCH2PPh2)2C10H6}] (3), in which no C-H activation has occurred. Subsequent reactions of the per-NHC complex 2 with carbon monoxide and mesityl isocyanide readily displaced the labile THF ligand to afford the complexes [RuCl2(CA){κ(3)-P,C,P'-C(NCH2PCy2)2C10H6}] (A = O 4, A = NC6H2Me35). Double C-H activation of 1a and 1b was significantly more facile on reaction with [OsCl2(PPh3)3], providing the per-NHC complexes [OsHCl(PPh3){κ(3)-P,C,P'-C(NCH2PR2)2C10H6}] (R = Cy 7a, R = Ph 7b, respectively), each as two isomers. The reactions of 1b with [Ru2(µ-Cl)2Cl2(η-C6H3Me3)2] or [AuCl(THT)] (THT = tetrahydrothiophene) provide the bimetallic complexes [Ru2{µ-H2C(NCH2PPh2)2C10H6}Cl4(η-C6H3Me3)2] (8) and [Au2{µ-H2C(NCH2PPh2)2C10H6}Cl2] (9) without C-H activation occurring.