Detalhe da pesquisa
1.
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Nucleic Acids Res
; 52(D1): D154-D163, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37971293
2.
scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.
Brief Bioinform
; 25(1)2023 11 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38084919
3.
EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes.
Nucleic Acids Res
; 51(D1): D564-D570, 2023 01 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36350659
4.
An atlas of human long non-coding RNAs with accurate 5' ends.
Nature
; 543(7644): 199-204, 2017 03 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-28241135
5.
Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms.
Int J Mol Sci
; 24(10)2023 May 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37239934
6.
Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq.
Int J Mol Sci
; 24(7)2023 Mar 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-37047200
7.
RUNX1/CEBPA Mutation in Acute Myeloid Leukemia Promotes Hypermethylation and Indicates for Demethylation Therapy.
Int J Mol Sci
; 23(19)2022 Sep 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-36232714
8.
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools.
Brief Bioinform
; 20(2): 551-564, 2019 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-29697742
9.
A promoter-level mammalian expression atlas.
Nature
; 507(7493): 462-70, 2014 Mar 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-24670764
10.
A novel method for improved accuracy of transcription factor binding site prediction.
Nucleic Acids Res
; 46(12): e72, 2018 07 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29617876
11.
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Nucleic Acids Res
; 46(D1): D252-D259, 2018 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29140464
12.
Practical Guidance in Genome-Wide RNA:DNA Triple Helix Prediction.
Int J Mol Sci
; 21(3)2020 Jan 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-32012884
13.
CpG traffic lights are markers of regulatory regions in human genome.
BMC Genomics
; 20(1): 102, 2019 Feb 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30709331
14.
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Res
; 45(D1): D737-D743, 2017 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27794045
15.
Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions.
Mol Biol Evol
; 34(9): 2203-2213, 2017 09 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28873953
16.
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Nucleic Acids Res
; 44(D1): D116-25, 2016 Jan 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-26586801
17.
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Nucleic Acids Res
; 41(Database issue): D195-202, 2013 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-23175603
18.
Effects of cytosine methylation on transcription factor binding sites.
BMC Genomics
; 15: 119, 2014 Mar 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-24669864
19.
HiMoRNA: A Comprehensive Database of Human lncRNAs Involved in Genome-Wide Epigenetic Regulation.
Noncoding RNA
; 8(1)2022 Feb 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-35202091
20.
Genome-wide regulation of CpG methylation by ecCEBPα in acute myeloid leukemia.
F1000Res
; 10: 204, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-34557292