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1.
Food Microbiol ; 85: 103279, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31500702

RESUMO

Cereulide, a potent toxin produced by Bacillus cereus, is a small, highly heat- and acid-resistant depsipeptide toxin, which confronts food industry with several challenges. Due to the ubiquitous presence of B. cereus in the environment, this opportunistic pathogen can enter food production and processing at almost any stage. Although the bacteria itself might be removed during food processing, the cereulide toxin will most likely not be destroyed or inactivated by these processes. Because of the high toxicity of cereulide and the high incidence rates often observed in connection with foodborne outbreaks, the understanding of the mechanisms of toxin production as well as accurate data on contamination sources and factors promoting toxin formation are urgently needed to prevent contamination and toxin production in food production processes. Over the last decade, considerable progress had been made on the understanding of cereulide toxin biosynthesis in emetic B. cereus, but an overview of current knowledge on this toxin with regards to food industry perspective is lacking. Thus, we aim in this work to summarize data available on extrinsic parameters acting on cereulide toxin synthesis in emetic B. cereus and to discuss the food industry specific challenges related to this toxin. Furthermore, we emphasize how identification of the cardinals in food production processes can lead to novel effective strategies for prevention of toxin formation in the food processing chain and could contribute to the improvement of existing HACCP studies.


Assuntos
Bacillus cereus/metabolismo , Depsipeptídeos/biossíntese , Contaminação de Alimentos/análise , Microbiologia de Alimentos , Doenças Transmitidas por Alimentos/prevenção & controle , Toxinas Bacterianas/biossíntese , Surtos de Doenças/prevenção & controle , Contaminação de Alimentos/prevenção & controle , Manipulação de Alimentos , Indústria Alimentícia/métodos , Indústria Alimentícia/normas
2.
Euro Surveill ; 24(18)2019 May.
Artigo em Inglês | MEDLINE | ID: mdl-31064635

RESUMO

BackgroundIn 2017, a food-borne Salmonella Agona outbreak caused by infant milk products from a French supplier occurred in Europe. Simultaneously, S. Agona was detected in animal feed samples in Bavaria.AimUsing next generation sequencing (NGS) and three data analysis methods, this study's objectives were to verify clonality of the Bavarian feed strains, rule out their connection to the outbreak, explore the genetic diversity of Bavarian S. Agona isolates from 1993 to 2018 and compare the analysis approaches employed, for practicality and ability to delineate outbreaks caused by the genetically monomorphic Agona serovar.MethodsIn this observational retrospective study, three 2017 Bavarian feed isolates were compared to a French outbreak isolate and 48 S. Agona isolates from our strain collections. The later included human, food, feed, veterinary and environmental isolates, of which 28 were epidemiologically outbreak related. All isolates were subjected to NGS and analysed by: (i) a publicly available species-specific core genome multilocus sequence typing (cgMLST) scheme, (ii) single nucleotide polymorphism phylogeny and (iii) an in-house serovar-specific cgMLST scheme. Using additional international S. Agona outbreak NGS data, the cluster resolution capacity of the two cgMLST schemes was assessed.ResultsWe could prove clonality of the feed isolates and exclude their relation to the French outbreak. All approaches confirmed former Bavarian epidemiological clusters.ConclusionEven for S. Agona, species-level cgMLST can produce reasonable resolution, being standardisable by public health laboratories. For single samples or homogeneous sample sets, higher resolution by serovar-specific cgMLST or SNP genotyping can facilitate outbreak investigations.


Assuntos
Surtos de Doenças , Infecções por Salmonella/epidemiologia , Infecções por Salmonella/microbiologia , Salmonella enterica/genética , Ração Animal/microbiologia , Animais , Técnicas de Tipagem Bacteriana , Bovinos , Galinhas , Suplementos Nutricionais/microbiologia , Microbiologia de Alimentos , França/epidemiologia , Alemanha/epidemiologia , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Humanos , Tipagem de Sequências Multilocus , Polimorfismo de Nucleotídeo Único , Estudos Retrospectivos , Salmonella enterica/classificação , Sorogrupo , Especiarias/microbiologia , Chá/microbiologia
3.
4.
Euro Surveill ; 22(50)2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29258650

RESUMO

A European multi-country outbreak of Salmonella Enteritidis phage type (PT) 14b occurred from March to November 2014 associated with the consumption of eggs. The outbreak involved more than 400 human cases from France, Luxembourg, Austria and the United Kingdom. In 2016-2017, it has been re-evaluated combining recent epidemiological results with latest molecular data. The outbreak was traced back to one large Bavarian egg producer with four distinct premises, three located in Bavaria, one in the Czech Republic. The outbreak isolates of S. Enteritidis PT 14b were grouped into three closely related clades by whole genome sequencing. Two of these clades could be referred to two Bavarian premises of the egg producer on the basis of epidemiological and molecular data, while epidemiological data presumably linked the third clade to another premises of the egg producer. Interestingly and in contrast to the situation in other European countries where several outbreaks were documented, all notified 91 laboratory-confirmed cases of S. Enteritidis PT 14b from Bavaria were sporadic, singular cases not belonging to any epidemiological outbreaks. In conclusion, as demonstrated here, the resolution of food-related outbreaks with such a high discriminatory power is rare in outbreak investigation.


Assuntos
Tipagem de Bacteriófagos/métodos , Surtos de Doenças , Ovos/microbiologia , Intoxicação Alimentar por Salmonella/epidemiologia , Infecções por Salmonella/epidemiologia , Salmonella enteritidis/genética , Salmonella enteritidis/isolamento & purificação , Animais , Áustria/epidemiologia , República Tcheca/epidemiologia , França/epidemiologia , Humanos , Luxemburgo/epidemiologia , Polimorfismo de Nucleotídeo Único , Salmonella enteritidis/classificação , Reino Unido/epidemiologia , Sequenciamento Completo do Genoma
5.
Analyst ; 141(18): 5281-97, 2016 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-27353114

RESUMO

Botulinum neurotoxin (BoNT) serotypes C and D and their mosaic variants CD and DC cause severe cases of botulism in animal husbandry and wildlife. Epidemiological data on the exact serotype or toxin variant causing outbreaks are rarely available, mainly because of their high sequence identity and the lack of fast and specific screening tools to detect and differentiate the four similar toxins. To fill this gap, we developed four highly specific sandwich enzyme-linked immunosorbent assays (ELISAs) able to detect and differentiate botulinum neurotoxins type BoNT/C, D, CD, and DC based on four distinct combinations of specific monoclonal antibodies targeting both conserved and divergent subdomains of the four toxins. Here, highly sensitive detection with detection limits between 2 and 24 pg mL(-1) was achieved. The ELISAs were extensively validated and results were compared with data obtained by quantitative real-time PCR using a panel of Clostridium botulinum strains, real sample materials from veterinary botulism outbreaks, and non-BoNT-producing Clostridia. Additionally, in order to verify the results obtained by ELISA screening, the new monoclonal antibodies were used for BoNT enrichment and subsequent detection (i) on a functional level by endopeptidase mass spectrometry (Endopep-MS) assays and (ii) on a protein sequence level by LC-MS/MS spectrometry. Based on all technical information gathered in the validation study, the four differentiating ELISAs turned out to be highly reliable screening tools for the rapid analysis of veterinary botulism cases and should aid future field investigations of botulism outbreaks and the acquisition of epidemiological data.


Assuntos
Toxinas Botulínicas/classificação , Ensaio de Imunoadsorção Enzimática , Espectrometria de Massas , Sequência de Aminoácidos , Animais , Clostridium botulinum , Sorogrupo
6.
BMC Microbiol ; 14: 59, 2014 Mar 08.
Artigo em Inglês | MEDLINE | ID: mdl-24606756

RESUMO

BACKGROUND: Vibrio parahaemolyticus is frequently isolated from environmental and seafood samples and associated with gastroenteritis outbreakes in American, European, Asian and African countries. To distinguish between different lineages of V. parahaemolyticus various genotyping techniques have been used, incl. multilocus sequence typing (MLST). Even though some studies have already applied MLST analysis to characterize V. parahaemolyticus strain sets, these studies have been restricted to specific geographical areas (e.g. U.S. coast, Thailand and Peru), have focused exclusively on pandemic or non-pandemic pathogenic isolates or have been based on a limited strain number. RESULTS: To generate a global picture of V. parahaemolyticus genotype distribution, a collection of 130 environmental and seafood related V. parahaemolyticus isolates of different geographical origins (Sri Lanka, Ecuador, North Sea and Baltic Sea as well as German retail) was subjected to MLST analysis after modification of gyrB and recA PCRs. The V. parahaemolyticus population was composed of 82 unique Sequence Types (STs), of which 68 (82.9%) were new to the pubMLST database. After translating the in-frame nucleotide sequences into amino acid sequences, less diversity was detectable: a total of 31 different peptide Sequence Types (pSTs) with 19 (61.3%) new pSTs were generated from the analyzed isolates. Most STs did not show a global dissemination, but some were supra-regionally distributed and clusters of STs were dependent on geographical origin. On peptide level no general clustering of strains from specific geographical regions was observed, thereby the most common pSTs were found on all continents (Asia, South America and Europe) and rare pSTs were restricted to distinct countries or even geographical regions. One lineage of pSTs associated only with strains from North and Baltic Sea strains was identified. CONCLUSIONS: Our study reveals a high genetic diversity in the analyzed V. parahaemolyticus strain set as well as for geographical strain subsets, with a high proportion of newly discovered alleles and STs. Differences between the subsets were identified. Our data support the postulated population structure of V. parahaemolyticus which follows the 'epidemic' model of clonal expansion. Application of peptide based AA-MLST allowed the identification of reliable relationships between strains.


Assuntos
Microbiologia Ambiental , Variação Genética , Tipagem de Sequências Multilocus , Filogeografia , Alimentos Marinhos/microbiologia , Vibrio parahaemolyticus/classificação , Vibrio parahaemolyticus/genética , DNA Girase/genética , Genótipo , Recombinases Rec A/genética , Vibrio parahaemolyticus/isolamento & purificação
7.
Int J Food Microbiol ; 388: 110064, 2023 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-36610236

RESUMO

This article describes the outline and organisation of the validation of three multiplex PCR methods for species identification and/or confirmation of thermotolerant Campylobacter spp. The three PCR methods were validated against the reference method described in the EN ISO standard 10272:2017. The results of the PCR methods were compared against the reference method in a method comparison study and an interlaboratory study based on EN ISO 16140-6:2019. The performance, in terms of inclusivity and exclusivity, of each of the eight PCR targets were comparable to the performance of the reference method: close, equal, or better depending on the target. In total, all three PCR methods were concluded to be equally qualified as the reference method for molecular identification and/or confirmation of thermotolerant Campylobacter spp., C. jejuni, C. coli and C. lari isolated from the food chain and have been included in Amendment 1 of ISO 10272:2017.


Assuntos
Campylobacter jejuni , Campylobacter , Campylobacter/genética , Cadeia Alimentar , Microbiologia de Alimentos , Reação em Cadeia da Polimerase Multiplex , Campylobacter jejuni/genética
8.
J Food Prot ; 86(1): 100015, 2023 01.
Artigo em Inglês | MEDLINE | ID: mdl-36916596

RESUMO

Several foodborne outbreaks associated with food of non-animal origin (FNAO) were reported within the last years. In recent years, Listeriamonocytogenes has been associated with such outbreaks. For this reason, different producers of FNAO at the primary production and processing level in Bavaria, Germany, were inspected from July 2020 to June 2021. Environmental and food sampling as well as the sampling of irrigation and processing water was performed to investigate the prevalence of Listeriaspp., including L.monocytogenes at facilities that produce ready-to-eat FNAO. Altogether, 39 producers of soft fruit, vegetables, ready-to-eat raw fruits, and vegetables/fresh cut were inspected. In addition to the on-spot inspections, 407 samples were taken in total, among them, 229 were swab samples from food contact material and the environment, 59 food samples (including soft fruit, vegetables and ready-to-eat vegetables), and 119 samples of irrigation and processing water. Samples were analyzed using methods according to ISO11290-1:2017. Furthermore, the samples of irrigation and processing water were also quantitatively tested for the number of Escherichiacoli (ISO9308-2:2014-06), enterococci (ISO7899-2:2000-11), and Pseudomonasaeruginosa (ISO16266:2008-05). No contamination with E.coli, enterococci, and P.aeruginosa could be detected in most of the samples. Overall, in 12.53% of the samples, Listeriaspp. were detected. L.monocytogenes was identified in 1.72% of the environmental and processing water samples, whereas L.monocytogenes was not detected in food samples. In addition to water sources and quality, this study demonstrates that irrigation regime, cultivation, hygienic handling, and maintenance protocols are highly important to reduce the potential contamination of ready-to-eat soft fruits and vegetables with Listeriaspp.


Assuntos
Listeria monocytogenes , Listeria , Verduras , Frutas , Escherichia coli , Microbiologia de Alimentos , Contaminação de Alimentos/análise
9.
Foods ; 12(6)2023 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-36981047

RESUMO

Reported cases of listeriosis from food of non-animal origin (FNAO) are increasing. In order to assess the risk of exposure to Listeria monocytogenes from FNAO, the genetic characterization of the pathogen in FNAO products and in primary production and processing plants needs to be investigated. For this, 123 samples of fresh and frozen soft fruit and 407 samples of 39 plants in Bavaria, Germany that produce and process FNAO were investigated for Listeria contamination. As a result, 64 Listeria spp. isolates were detected using ISO 11290-1:2017. Environmental swabs and water and food samples were investigated. L. seeligeri (36/64, 56.25%) was the most frequently identified species, followed by L. monocytogenes (8/64, 12.50%), L. innocua (8/64, 12.50%), L. ivanovii (6/64, 9.38%), L. newyorkensis (5/64, 7.81%), and L. grayi (1/64, 1.56%). Those isolates were subsequently sequenced by whole-genome sequencing and subjected to pangenome analysis to retrieve data on the genotype, serotype, antimicrobial resistance (AMR), and virulence markers. Eight out of sixty-four Listeria spp. isolates were identified as L. monocytogenes. The serogroup analysis detected that 62.5% of the L. monocytogenes isolates belonged to serogroup IIa (1/2a and 3a) and 37.5% to serogroup IVb (4b, 4d, and 4e). Furthermore, the MLST (multilocus sequence typing) analysis of the eight detected L. monocytogenes isolates identified seven different sequence types (STs) and clonal complexes (CCs), i.e., ST1/CC1, ST2/CC2, ST6/CC6, ST7/CC7, ST21/CC21, ST504/CC475, and ST1413/CC739. The core genome MLST analysis also showed high allelic differences and suggests plant-specific isolates. Regarding the AMR, we detected phenotypic resistance against benzylpenicillin, fosfomycin, and moxifloxacin in all eight L. monocytogenes isolates. Moreover, virulence factors, such as prfA, hly, plcA, plcB, hpt, actA, inlA, inlB, and mpl, were identified in pathogenic and nonpathogenic Listeria species. The significance of L. monocytogenes in FNAO is growing and should receive increasing levels of attention.

10.
Foodborne Pathog Dis ; 8(1): 39-44, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21034270

RESUMO

Yersinia enterocolitica is a major foodborne pathogen and the third most important bacteriological cause of diarrhea in Germany. However, studies investigating the occurrence of human pathogenic Y. enterocolitica in food at the retail level are very rare. Most of the studies published so far show qualitative but not quantitative data concerning the prevalence of this human pathogen. In this study the qualitative and quantitative assessment of human pathogenic Y. enterocolitica in different food matrices was investigated. For the qualitative analysis we used an enrichment method according to the International Organisation of Standardization (ISO) standard in combination with a real-time polymerase chain reaction (PCR) method detecting the ail gene of Y. enterocolitica. After detecting Y. enterocolitica in a sample, a quantitative investigation on Cefsulodin-Irgasan-Novobiocin (CIN) Agar was done to get information about the contamination level of the different samples. During the years 2008 and 2009, 446 samples of pork and pork products, 51 samples of game meat, and 61 raw milk samples were investigated for the presence of human pathogenic Y. enterocolitica. The samples were collected at the retail level in Bavaria. From the pork samples investigated, 81 samples (18%) were positive for the ail gene by real-time PCR, but human pathogenic Y. enterocolitica O:3 were found only in 46 (10%) pork samples by culture; the concentration in the samples ranged between 0.04 cfu/g and 2.30 × 10(5) cfu/g. Three game meat samples were positive by real-time PCR, but not by the cultural detection. All raw milk samples were negative by real-time PCR and culture.


Assuntos
Microbiologia de Alimentos , Yersinia enterocolitica/isolamento & purificação , Animais , Técnicas de Tipagem Bacteriana , Contagem de Colônia Microbiana , Análise de Alimentos , Alemanha , Humanos , Carne/análise , Carne/microbiologia , Leite/microbiologia , Reação em Cadeia da Polimerase , Suínos , Yersinia enterocolitica/classificação , Yersinia enterocolitica/genética
11.
Toxins (Basel) ; 13(4)2021 04 08.
Artigo em Inglês | MEDLINE | ID: mdl-33917845

RESUMO

Clostridium perfringens enterotoxin (CPE) regularly causes food poisoning and antibiotic-associated diarrhea; therefore, reliable toxin detection is crucial. To this aim, we explored stationary and mobile strategies to detect CPE either exclusively by monoclonal antibodies (mAbs) or, alternatively, by toxin-enrichment via the cellular receptor of CPE, claudin-4, and mAb detection. Among the newly generated mAbs, we identified nine CPE-specific mAbs targeting five distinct epitopes, among them mAbs recognizing CPE bound to claudin-4 or neutralizing CPE activity in vitro. In surface plasmon resonance experiments, all mAbs and claudin-4 revealed excellent affinities towards CPE, ranging from 0.05 to 2.3 nM. Integrated into sandwich enzyme-linked immunosorbent assays (ELISAs), the most sensitive mAb/mAb and claudin-4/mAb combinations achieved similar detection limits of 0.3 pg/mL and 1.0 pg/mL, respectively, specifically detecting recombinant CPE from spiked feces and native CPE from 30 different C. perfringens culture supernatants. The implementation of mAb- and receptor-based ELISAs into a mobile detection platform enabled the fast detection of CPE, which will be helpful in clinical laboratories to diagnose diarrhea of assumed bacterial origin. In conclusion, we successfully employed an endogenous receptor and novel high affinity mAbs for highly sensitive and specific CPE-detection. These tools will be useful for both basic and applied research.


Assuntos
Anticorpos Monoclonais , Claudina-4/metabolismo , Infecções por Clostridium/diagnóstico , Clostridium perfringens/metabolismo , Enterotoxinas/análise , Ensaio de Imunoadsorção Enzimática , Doenças Transmitidas por Alimentos/diagnóstico , Animais , Afinidade de Anticorpos , Especificidade de Anticorpos , Automação Laboratorial , Claudina-4/genética , Claudina-4/imunologia , Infecções por Clostridium/microbiologia , Clostridium perfringens/genética , Clostridium perfringens/imunologia , Enterotoxinas/genética , Enterotoxinas/imunologia , Enterotoxinas/metabolismo , Mapeamento de Epitopos , Epitopos , Fezes , Doenças Transmitidas por Alimentos/microbiologia , Humanos , Limite de Detecção , Camundongos , Valor Preditivo dos Testes , Ligação Proteica , Reprodutibilidade dos Testes , Fluxo de Trabalho
12.
Appl Environ Microbiol ; 75(20): 6457-61, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19684163

RESUMO

Botulinum neurotoxin (BoNT), the most toxic substance known, is produced by the spore-forming bacterium Clostridium botulinum and, in rare cases, also by some strains of Clostridium butyricum and Clostridium baratii. The standard procedure for definitive detection of BoNT-producing clostridia is a culture method combined with neurotoxin detection using a standard mouse bioassay (SMB). The SMB is highly sensitive and specific, but it is expensive and time-consuming and there are ethical concerns due to use of laboratory animals. PCR provides a rapid alternative for initial screening for BoNT-producing clostridia. In this study, a previously described multiplex PCR assay was modified to detect all type A, B, E, and F neurotoxin genes in isolated strains and in clinical, food, environmental samples. This assay includes an internal amplification control. The effectiveness of the multiplex PCR method for detecting clostridia possessing type A, B, E, and F neurotoxin genes was evaluated by direct comparison with the SMB. This method showed 100% inclusivity and 100% exclusivity when 182 BoNT-producing clostridia and 21 other bacterial strains were used. The relative accuracy of the multiplex PCR and SMB was evaluated using 532 clinical, food, and environmental samples and was estimated to be 99.2%. The multiplex PCR was also used to investigate 110 freshly collected food and environmental samples, and 4 of the 110 samples (3.6%) were positive for BoNT-encoding genes.


Assuntos
Toxinas Botulínicas/biossíntese , Toxinas Botulínicas/genética , Clostridium/genética , Clostridium/isolamento & purificação , Microbiologia Ambiental , Microbiologia de Alimentos , Neurotoxinas/biossíntese , Neurotoxinas/genética , Reação em Cadeia da Polimerase/métodos , Animais , Sequência de Bases , Bioensaio/estatística & dados numéricos , Clostridium/metabolismo , Clostridium botulinum/genética , Clostridium botulinum/isolamento & purificação , Clostridium botulinum/metabolismo , Primers do DNA/genética , DNA Bacteriano/genética , Genes Bacterianos , Humanos , Camundongos , Reação em Cadeia da Polimerase/estatística & dados numéricos , Sensibilidade e Especificidade
13.
Int J Food Microbiol ; 288: 66-74, 2019 Jan 02.
Artigo em Inglês | MEDLINE | ID: mdl-29395387

RESUMO

EN ISO 10273 method for the detection of pathogenic Yersinia enterocolitica in foods was validated in the project Mandate M/381 funded by European Commission. A total of 14 laboratories from five European countries participated in the interlaboratory study (ILS) organized during 2013 and 2014. Before the ILS, the method was revised by an international group of experts and the performance of the revised method was assessed in an ILS study. The results are published as a part of the standard EN ISO 10273 revision. The study included three rounds with different sample types; raw milk, iceberg lettuce and minced meat, inoculated with a low and high level of pathogenic Y. enterocolitica strains representing major pathogenic bioserotypes 4/O:3 and 2/O:9. The homogeneity and stability of the samples were verified before dispatching them to the laboratories. The results demonstrated the method sensitivity of 96% in raw milk, 97% in minced meat, and 98% in lettuce at high inoculation level of pathogenic Y. enterocolitica. The specificity was 100% in raw milk, 96% in minced meat, and 98% in lettuce. The level of detection, LOD50, varied between study rounds, being 9.4 CFU/25 ml in raw milk, 9.9 CFU/25 g in minced meat and 63 CFU/25 g in lettuce samples. During the study, confirmation by using real-time PCR method ISO/TS 18867 together with pyrazinamidase testing was also validated, as alternative to conventional biochemical confirmation. When comparing different isolation steps used in the revised method during the study rounds, PSB enrichment and plating on CIN after alkaline (KOH) treatment showed the highest sensitivity (52-92%) in raw milk and minced meat samples. In lettuce samples, however, ITC with KOH treatment before plating on CIN showed higher sensitivity (64% at low level; 82% at high level) than plating on CIN from PSB with KOH treatment (44% at low level; 74% at high level). Statistical analysis of different isolation steps supported the use of two enrichment media, PSB and ITC, in the revised method. Recovery of pathogenic Y. enterocolitica on CIN was most efficient after KOH treatment and, based on the analysis, plating on CIN agar without KOH treatment could be left as optional procedure in the method.


Assuntos
Microbiologia de Alimentos/métodos , Yersinia enterocolitica/fisiologia , Animais , Europa (Continente) , União Europeia , Lactuca/microbiologia , Limite de Detecção , Carne/microbiologia , Leite/microbiologia , Reprodutibilidade dos Testes , Yersinia enterocolitica/isolamento & purificação
15.
Vet Microbiol ; 223: 93-99, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-30173759

RESUMO

Resistance to ß-lactam antibiotics, including third-generation cephalosporins, is of major concern for animal and human health. In this study, extended-spectrum ß-lactamase (ESBL) / plasmid-mediated AmpC (pAmpC) ß-lactamase -producing Escherichia coli isolates from German livestock farms were characterised and associations of these isolate characteristics with farm-related factors were investigated across different types of livestock. A total of 469 isolates originating from 150 farms (34 broiler farms, 38 fattening pig farms, 43 dairy cattle farms, 35 beef cattle farms) was included in the analyses. ESBL-gene family, phylogroup and phenotypic antimicrobial susceptibility for several antimicrobial agents were determined. This data was used to define different profiles characterising the isolates. Multivariate analyses using a distance-based non-parametric approach were performed to investigate associations between the profiles of the isolates and farm-related factors (e.g. management, husbandry, and environment of the farms). Co-occurrence of ESBL-gene families were not found in any of the isolates analysed. Sixty-eight percent of the isolates carried blaCTX-M variant genes. The frequency of phylogroups was as follows: A (55%), B1 (35%), D (17%) and B2 (3%). The most frequent phenotypic non-wildtype profile was non-wildtype status of solely cefepime (27%). Profiles of isolates from broilers differed substantially from those of other isolates. Associations between farm-related factors and characteristics profiles differed, depending on the isolate characteristics included in the analyses. Some factors describing the farm environment, like waterfowl in the surrounding of the farm, were associated with all tested profiles. The epidemiological method applied defines distances between isolates on basis of isolate characteristics data and is capable of analysing associations between isolate characteristics and epidemiological factors. As additional data, such as plasmid characteristics, gene type, or sequence information could be included in future studies, the method is suitable to identify points of action to reduce the occurrence of antimicrobial resistant bacteria.


Assuntos
Proteínas de Bactérias/genética , Doenças dos Bovinos/microbiologia , Galinhas/microbiologia , Infecções por Escherichia coli/veterinária , Escherichia coli/enzimologia , Doenças das Aves Domésticas/microbiologia , Doenças dos Suínos/microbiologia , beta-Lactamases/genética , Animais , Antibacterianos/farmacologia , Bovinos , Cefotaxima/farmacologia , Estudos Transversais , Farmacorresistência Bacteriana , Escherichia coli/genética , Escherichia coli/isolamento & purificação , Infecções por Escherichia coli/microbiologia , Fazendas , Humanos , Gado , Plasmídeos/genética , Suínos
16.
Prev Vet Med ; 142: 39-45, 2017 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-28606364

RESUMO

Resistance to third-generation cephalosporins and other beta-lactam antibiotics is of major concern for animal and human health. Knowledge of the prevalence of resistant bacteria in primary production is an important element to estimate transmission along the stages in the food production chain and the exposure of the human population. The primary objective of this study was to determine the prevalence of cefotaxime-resistant commensal E. coli in dairy and beef cattle production units throughout Germany. Secondarily, the association between management factors and the presence of cefotaxime resistance was investigated. In total, 60 beef cattle and 52 dairy cattle production units all over Germany were included. Cefotaxime-resistant E. coli were isolated from at least one sample in 70% (95% CI: 58-83%) of the farms keeping beef cattle and 85% (95% CI: 75-94%) of the farms keeping dairy cattle. The sample prevalence was 35% (161/455; 95% CI: 31-40%) and 48% (156/323; 95% CI: 43-54%), respectively. Most factors associated with resistance to cefotaxime indicate that less intensive production results in a lower number of positive samples. For beef cattle, antimicrobial treatment of the whole animal group was significantly associated with an increased proportion of samples containing cefotaxime resistant E. coli. In addition, our results indicate that better hygiene management could improve the resistance situation on cattle farms.


Assuntos
Antibacterianos/farmacologia , Doenças dos Bovinos/tratamento farmacológico , Cefotaxima/farmacologia , Infecções por Escherichia coli/veterinária , Escherichia coli/efeitos dos fármacos , Animais , Bovinos , Doenças dos Bovinos/microbiologia , Estudos Transversais , Farmacorresistência Bacteriana , Infecções por Escherichia coli/tratamento farmacológico , Fazendas , Alemanha , Prevalência
17.
Sci Rep ; 6: 28442, 2016 06 21.
Artigo em Inglês | MEDLINE | ID: mdl-27324200

RESUMO

Salmonella spp. and thermotolerant Campylobacter spp. are the most important causes of human bacterial diarrheal infections worldwide. These bacterial species are influenced by several factors like behaviour of the host, shedding, environment incl. directly or indirectly through ambient temperature, and the infections show seasonality. Therefore, the aim of our study was to investigate the association between the occurrence of human campylobacteriosis and salmonellosis and the ambient temperature. The number of campylobacteriosis and salmonellosis cases in two German metropolises, Munich and Berlin, and three rural regions was analysed with simultaneous consideration of the ambient temperature over a period of four years (2001 to 2004) using regression, time series, and cross-correlation analysis. The statistical analysis showed that an increase in the ambient temperature correlated positively with an increase in human Salmonella and Campylobacter cases. The correlation occurred with a delay of approximately five weeks. The seasonal rise in ambient temperature correlated with increased incidence of bacterial diarrheal infections.


Assuntos
Infecções por Campylobacter/epidemiologia , Infecções por Salmonella/epidemiologia , Infecções por Campylobacter/diagnóstico , Diarreia/microbiologia , Alemanha/epidemiologia , Humanos , Prevalência , Infecções por Salmonella/diagnóstico , Estações do Ano , Temperatura
18.
Genome Announc ; 4(3)2016 Jun 09.
Artigo em Inglês | MEDLINE | ID: mdl-27284145

RESUMO

We present here the whole shotgun genome sequences of seven strains of Bacillus cereus isolated from foodstuff samples or food poisoning incidents.

19.
Adv Biochem Eng Biotechnol ; 151: 63-99, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26337844

RESUMO

The increasing number of agricultural biogas plants and higher amounts of digestate spread on agricultural land arouse a considerable interest in the hygiene situation of digested products. This chapter reviews the current knowledge on sanitation during anaerobic digestion and the hygienic status of digestate concerning a multitude of pathogens potentially compromising the health of humans, animals and plants. Physical, chemical and biological parameters influencing the efficiency of sanitation in anaerobic digestion are considered. The degree of germ reduction depends particularly on the resistance of the pathogen of concern, the processing conditions, the feedstock composition and the diligence of the operation management. Most scientific studies facing sanitation in biogas plants have provided data ascertaining reduction of pathogens by the biogas process. Some pathogens, however, are able to persist virtually unaffected due to the ability to build resistant permanent forms. As compared to the feedstock, the sanitary status of the digestate is thus improved or in the worst case, the sanitary quality remains almost unchanged. According to this, the spreading of digestate on agricultural area in accordance to current rules and best practice recommendations is considered to impose no additional risk for the health of humans, animals and plants.


Assuntos
Biocombustíveis , Higiene , Anaerobiose , Animais , Humanos , Microbiota , Especificidade da Espécie
20.
Berl Munch Tierarztl Wochenschr ; 128(3-4): 117-21, 2015.
Artigo em Alemão | MEDLINE | ID: mdl-25876271

RESUMO

Thermotolerant Campylobacter spp. rank among the most important foodborne pathogens in Germany. Therefore a necessity for rapid and routinely useable detection methods exists also in the area of food microbiology. A reliable, cultura qualitative, but also quantitative detection of thermotolerant Campylobacter spp. pose a challenge, at least concerning special food matrices, especially because in the context of official food control the cultural detection of thermotolerant Campylobacter spp. is needed. This was the reason, why different cultural detection methods, beside the standard procedure of ISO 10272:2006, in combination with molecular and immunological screening methods were tested at the Bavarian Health and Food Safety Authority (LGL) during the last years for the use in routine diagnostic using different food matrices of animal and plant origin. The results of the comparative studies showed clearly that no enrichment broth tested gave completely satisfactory results for an only culture-based detection the combination with a screening method is therefore recommended for a rapid and reliable detection. But in this case the user should take into account that the sensitivity of such molecular and immunological methods is normally so high that in some cases, depending on the food matrix and processing step, the isolation of the pathogen would not be possible in samples, which were positive in the screening methods.


Assuntos
Técnicas Bacteriológicas/métodos , Campylobacter/isolamento & purificação , Campylobacter/fisiologia , Microbiologia de Alimentos/métodos
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