Detalhe da pesquisa
1.
Ebola virus VP35 interacts non-covalently with ubiquitin chains to promote viral replication.
PLoS Biol
; 22(2): e3002544, 2024 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-38422166
2.
Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation.
PLoS Comput Biol
; 18(12): e1010777, 2022 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-36516216
3.
Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants.
PLoS Comput Biol
; 17(8): e1009286, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34351895
4.
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability.
Nucleic Acids Res
; 43(W1): W395-400, 2015 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25883149
5.
NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID.
Bioinformatics
; 31(23): 3856-8, 2015 Dec 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-26249810
6.
Achievements and challenges in structural bioinformatics and computational biophysics.
Bioinformatics
; 31(1): 146-50, 2015 Jan 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25488929
7.
A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations.
PLoS Comput Biol
; 10(4): e1003569, 2014 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-24762569
8.
FlexAID: Revisiting Docking on Non-Native-Complex Structures.
J Chem Inf Model
; 55(7): 1323-36, 2015 Jul 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-26076070
9.
Ebola Virus VP35 Interacts Non-Covalently with Ubiquitin Chains to Promote Viral Replication Creating New Therapeutic Opportunities.
bioRxiv
; 2023 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-37503276
10.
Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
Acta Crystallogr Sect F Struct Biol Cryst Commun
; 66(Pt 10): 1218-25, 2010 Oct 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-20944214
11.
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
Bioinformatics
; 23(2): e104-9, 2007 Jan 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-17237076
12.
Purine analogs targeting the guanine riboswitch as potential antibiotics against Clostridioides difficile.
Eur J Med Chem
; 143: 755-768, 2018 Jan 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29220796
13.
Evolutionary studies of ligand binding sites in proteins.
Curr Opin Struct Biol
; 45: 85-90, 2017 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-27992825
14.
Large-scale detection of drug off-targets: hypotheses for drug repurposing and understanding side-effects.
BMC Pharmacol Toxicol
; 18(1): 18, 2017 04 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-28449705
15.
Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes.
BMC Syst Biol
; 11(1): 60, 2017 Jun 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-28606124
16.
Modulating the selectivity of matriptase-2 inhibitors with unnatural amino acids.
Eur J Med Chem
; 129: 110-123, 2017 Mar 31.
Artigo
em Inglês
| MEDLINE | ID: mdl-28219045
17.
A method for localizing ligand binding pockets in protein structures.
Proteins
; 62(2): 479-88, 2006 Feb 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-16304646
18.
Deep-sequencing of the peach latent mosaic viroid reveals new aspects of population heterogeneity.
PLoS One
; 9(1): e87297, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-24498066
19.
Prediction of protein function from structure: insights from methods for the detection of local structural similarities.
Biotechniques
; 38(6): 847, 849, 851, 2005 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-16018542
20.
Structural analysis of metal sites in proteins: non-heme iron sites as a case study.
J Mol Biol
; 388(2): 356-80, 2009 May 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-19265704