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1.
PLoS Biol ; 19(6): e3001307, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34138840

RESUMO

More than 1.6 million Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) tests were administered daily in the United States at the peak of the epidemic, with a significant focus on individual treatment. Here, we show that objective-driven, strategic sampling designs and analyses can maximize information gain at the population level, which is necessary to increase situational awareness and predict, prepare for, and respond to a pandemic, while also continuing to inform individual treatment. By focusing on specific objectives such as individual treatment or disease prediction and control (e.g., via the collection of population-level statistics to inform lockdown measures or vaccine rollout) and drawing from the literature on capture-recapture methods to deal with nonrandom sampling and testing errors, we illustrate how public health objectives can be achieved even with limited test availability when testing programs are designed a priori to meet those objectives.


Assuntos
Monitoramento Epidemiológico , Pandemias , COVID-19/diagnóstico , COVID-19/epidemiologia , COVID-19/prevenção & controle , Teste para COVID-19 , Humanos , Pandemias/prevenção & controle , Saúde Pública , Alocação de Recursos , SARS-CoV-2/isolamento & purificação , Vigilância de Evento Sentinela , Estados Unidos/epidemiologia
2.
Proc Natl Acad Sci U S A ; 118(31)2021 08 03.
Artigo em Inglês | MEDLINE | ID: mdl-34282032

RESUMO

Changes in the distribution and abundance of invasive species can have far-reaching ecological consequences. Programs to control invaders are common but gauging the effectiveness of such programs using carefully controlled, large-scale field experiments is rare, especially at higher trophic levels. Experimental manipulations coupled with long-term demographic monitoring can reveal the mechanistic underpinnings of interspecific competition among apex predators and suggest mitigation options for invasive species. We used a large-scale before-after control-impact removal experiment to investigate the effects of an invasive competitor, the barred owl (Strix varia), on the population dynamics of an iconic old-forest native species, the northern spotted owl (Strix occidentalis caurina). Removal of barred owls had a strong, positive effect on survival of sympatric spotted owls and a weaker but positive effect on spotted owl dispersal and recruitment. After removals, the estimated mean annual rate of population change for spotted owls stabilized in areas with removals (0.2% decline per year), but continued to decline sharply in areas without removals (12.1% decline per year). The results demonstrated that the most substantial changes in population dynamics of northern spotted owls over the past two decades were associated with the invasion, population expansion, and subsequent removal of barred owls. Our study provides experimental evidence of the demographic consequences of competitive release, where a threatened avian predator was freed from restrictions imposed on its population dynamics with the removal of a competitively dominant invasive species.


Assuntos
Distribuição Animal , Espécies Introduzidas , Estrigiformes/fisiologia , Animais , Ecossistema , Noroeste dos Estados Unidos , Dinâmica Populacional
3.
Ecol Appl ; 33(1): e2726, 2023 01.
Artigo em Inglês | MEDLINE | ID: mdl-36053865

RESUMO

We conducted a range-wide investigation of the dynamics of site-level reproductive rate of northern spotted owls using survey data from 11 study areas across the subspecies geographic range collected during 1993-2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed further insights into northern spotted owl population ecology and dynamics. Both nondetection and state misclassification were important, especially because factors affecting these sources of error also affected focal ecological parameters. Annual probabilities of site occupancy were greatest at sites with successful reproduction in the previous year and lowest for sites not occupied by a pair in the previous year. Site-specific occupancy transition probabilities declined over time and were negatively affected by barred owl presence. Overall, the site-specific probability of successful reproduction showed substantial year-to-year fluctuations and was similar for occupied sites that did or did not experience successful reproduction the previous year. Site-specific probabilities for successful reproduction were very small for sites that were unoccupied the previous year. Barred owl presence negatively affected the probability of successful reproduction by northern spotted owls in Washington and California, as predicted, but the effect in Oregon was mixed. The proportions of sites occupied by northern spotted owl pairs showed steep, near-monotonic declines over the study period, with all study areas showing the lowest observed levels of occupancy to date. If trends continue it is likely that northern spotted owls will become extirpated throughout large portions of their range in the coming decades.


Assuntos
Estrigiformes , Animais , Probabilidade , Reprodução , Oregon , Washington
4.
PLoS Comput Biol ; 17(10): e1009518, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34710096

RESUMO

Stay-at-home orders and shutdowns of non-essential businesses are powerful, but socially costly, tools to control the pandemic spread of SARS-CoV-2. Mass testing strategies, which rely on widely administered frequent and rapid diagnostics to identify and isolate infected individuals, could be a potentially less disruptive management strategy, particularly where vaccine access is limited. In this paper, we assess the extent to which mass testing and isolation strategies can reduce reliance on socially costly non-pharmaceutical interventions, such as distancing and shutdowns. We develop a multi-compartmental model of SARS-CoV-2 transmission incorporating both preventative non-pharmaceutical interventions (NPIs) and testing and isolation to evaluate their combined effect on public health outcomes. Our model is designed to be a policy-guiding tool that captures important realities of the testing system, including constraints on test administration and non-random testing allocation. We show how strategic changes in the characteristics of the testing system, including test administration, test delays, and test sensitivity, can reduce reliance on preventative NPIs without compromising public health outcomes in the future. The lowest NPI levels are possible only when many tests are administered and test delays are short, given limited immunity in the population. Reducing reliance on NPIs is highly dependent on the ability of a testing program to identify and isolate unreported, asymptomatic infections. Changes in NPIs, including the intensity of lockdowns and stay at home orders, should be coordinated with increases in testing to ensure epidemic control; otherwise small additional lifting of these NPIs can lead to dramatic increases in infections, hospitalizations and deaths. Importantly, our results can be used to guide ramp-up of testing capacity in outbreak settings, allow for the flexible design of combined interventions based on social context, and inform future cost-benefit analyses to identify efficient pandemic management strategies.


Assuntos
COVID-19/prevenção & controle , Pandemias/prevenção & controle , SARS-CoV-2 , COVID-19/epidemiologia , Teste para COVID-19/métodos , Controle de Doenças Transmissíveis/métodos , Biologia Computacional , Simulação por Computador , Análise Custo-Benefício , Humanos , Modelos Biológicos , Distanciamento Físico
5.
Ecol Appl ; 31(7): e02397, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34212448

RESUMO

Poaching is a pervasive threat to wildlife, yet quantifying the direct effect of poaching on wildlife is rarely possible because both wildlife and threat data are infrequently collected concurrently. In this study, we used poaching data collected through the Management Information System (MIST) and wildlife camera trap data collected by the Tropical Ecology Assessment and Monitoring (TEAM) network from 2014 to 2017 in Volcanoes National Park, Rwanda. We implemented co-occurrence multi-season occupancy models that accounted for imperfect detection to investigate the effect of poaching on initial occupancy, colonization, and extinction of five mammal species. Specifically, we focused on two species of conservation concern (mountain gorilla [Gorilla beringei beringei] and golden monkey [Cercopithecus mitis kandti]), and three species targeted by poachers (black-fronted duiker [Cephalophus nigrifrons], bushbuck [Tragelaphus scriptus], and African buffalo [Syncerus caffer]). We found that the probability of local extinction was highest in sites with poaching activity for golden monkey and bushbuck. In addition, the probability of initial occupancy for golden monkey was highest in sites without poaching activity. We only found weak evidence of effects of poaching on parameters governing the occupancy dynamics of the other species. All species showed evidence of poaching presence affecting the probability of detection of the wildlife species. This is the first study to our knowledge to combine direct threat observations from ranger-based monitoring data with camera trap wildlife observations to quantify the effect of poaching on wildlife. Given the widespread collection of ranger-based monitoring and camera trap data, our approach is broadly applicable to numerous protected areas and has the potential to significantly improve conservation management. Specifically, the relationship between poaching activity and wildlife population dynamics can be combined with information on the relationship between ranger patrols and poaching activity to develop models useful for making wise decisions about ranger patrol deployment.


Assuntos
Animais Selvagens , Gorilla gorilla , Agricultura , Animais , Conservação dos Recursos Naturais , Mamíferos , Parques Recreativos
7.
Glob Chang Biol ; 22(10): 3273-85, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-26990459

RESUMO

There is intense interest in basic and applied ecology about the effect of global change on current and future species distributions. Projections based on widely used static modeling methods implicitly assume that species are in equilibrium with the environment and that detection during surveys is perfect. We used multiseason correlated detection occupancy models, which avoid these assumptions, to relate climate data to distributional shifts of Louisiana Waterthrush in the North American Breeding Bird Survey (BBS) data. We summarized these shifts with indices of range size and position and compared them to the same indices obtained using more basic modeling approaches. Detection rates during point counts in BBS surveys were low, and models that ignored imperfect detection severely underestimated the proportion of area occupied and slightly overestimated mean latitude. Static models indicated Louisiana Waterthrush distribution was most closely associated with moderate temperatures, while dynamic occupancy models indicated that initial occupancy was associated with diurnal temperature ranges and colonization of sites was associated with moderate precipitation. Overall, the proportion of area occupied and mean latitude changed little during the 1997-2013 study period. Near-term forecasts of species distribution generated by dynamic models were more similar to subsequently observed distributions than forecasts from static models. Occupancy models incorporating a finite mixture model on detection - a new extension to correlated detection occupancy models - were better supported and may reduce bias associated with detection heterogeneity. We argue that replacing phenomenological static models with more mechanistic dynamic models can improve projections of future species distributions. In turn, better projections can improve biodiversity forecasts, management decisions, and understanding of global change biology.


Assuntos
Aves , Animais , Biodiversidade , Clima , Ecologia , Modelos Biológicos , Dinâmica Populacional
8.
Ecology ; 96(2): 332-9, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26240854

RESUMO

The occurrence of false positive detections in presence-absence data, even when they occur infrequently, can lead to severe bias when estimating species occupancy patterns. Building upon previous efforts to account for this source of observational error, we established a general framework to model false positives in occupancy studies and extend existing modeling approaches to encompass a broader range of sampling designs. Specifically, we identified three common sampling designs that are likely to cover most scenarios encountered by researchers. The different designs all included ambiguous detections, as well as some known-truth data, but their modeling differed in the level of the model hierarchy at which the known-truth information was incorporated (site level or observation level). For each model, we provide the likelihood, as well as R and BUGS code needed for implementation. We also establish a clear terminology and provide guidance to help choosing the most appropriate design and modeling approach.


Assuntos
Anuros/fisiologia , Ecossistema , Projetos de Pesquisa , Animais , Humanos , Modelos Biológicos , Densidade Demográfica , Especificidade da Espécie , Vocalização Animal/fisiologia
9.
Ecology ; 96(1): 16-23, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26236885

RESUMO

Ecologists frequently try to predict the future geographic distributions of species. Most studies assume that the current distribution of a species reflects its environmental requirements (i.e., the species' niche). However, the current distributions of many species are unlikely to be at equilibrium with the current distribution of environmental conditions, both because of ongoing invasions and because the distribution of suitable environmental conditions is always changing. This mismatch between the equilibrium assumptions inherent in many analyses and the disequilibrium conditions in the real world leads to inaccurate predictions of species' geographic distributions and suggests the need for theory and analytical tools that avoid equilibrium assumptions. Here, we develop a general theory of environmental associations during periods of transient dynamics. We show that time-invariant relationships between environmental conditions and rates of local colonization and extinction can produce substantial temporal variation in occupancy-environment relationships. We then estimate occupancy-environment relationships during three avian invasions. Changes in occupancy-environment relationships over time differ among species but are predicted by dynamic occupancy models. Since estimates of the occupancy-environment relationships themselves are frequently poor predictors of future occupancy patterns, research should increasingly focus on characterizing how rates of local colonization and extinction vary with environmental conditions.


Assuntos
Aves , Ecossistema , Modelos Biológicos , Animais , Extinção Biológica , Dinâmica Populacional
10.
Conserv Biol ; 29(4): 1100-1110, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25757801

RESUMO

Crop and livestock depredation by wildlife is a primary driver of human-wildlife conflict, a problem that threatens the coexistence of people and wildlife globally. Understanding mechanisms that underlie depredation patterns holds the key to mitigating conflicts across time and space. However, most studies do not consider imperfect detection and reporting of conflicts, which may lead to incorrect inference regarding its spatiotemporal drivers. We applied dynamic occupancy models to elephant crop depredation data from India between 2005 and 2011 to estimate crop depredation occurrence and model its underlying dynamics as a function of spatiotemporal covariates while accounting for imperfect detection of conflicts. The probability of detecting conflicts was consistently <1.0 and was negatively influenced by distance to roads and elevation gradient, averaging 0.08-0.56 across primary periods (distinct agricultural seasons within each year). The probability of crop depredation occurrence ranged from 0.29 (SE 0.09) to 0.96 (SE 0.04). The probability that sites raided by elephants in primary period t would not be raided in primary period t + 1 varied with elevation gradient in different seasons and was influenced negatively by mean rainfall and village density and positively by distance to forests. Negative effects of rainfall variation and distance to forests best explained variation in the probability that sites not raided by elephants in primary period t would be raided in primary period t + 1. With our novel application of occupancy models, we teased apart the spatiotemporal drivers of conflicts from factors that influence how they are observed, thereby allowing more reliable inference on mechanisms underlying observed conflict patterns. We found that factors associated with increased crop accessibility and availability (e.g., distance to forests and rainfall patterns) were key drivers of elephant crop depredation dynamics. Such an understanding is essential for rigorous prediction of future conflicts, a critical requirement for effective conflict management in the context of increasing human-wildlife interactions.


Entendimiento Mecánico del Conflicto Humano - Animales Silvestre a través de la Novedosa Aplicación de los Modelos Dinámicos de Ocupación Resumen La depredación de cultivos y ganado por parte de animales silvestres es un conductor principal del conflicto humano - animales silvestres, un problema que amenaza la coexistencia de la gente y la vida silvestre a nivel global. Entender los mecanismos que son la base de los patrones de depredación es la clave para mitigar los conflictos a lo largo del tiempo y el espacio. Sin embargo, la mayoría de los estudios no consideran la detección imperfecta y el reporte de conflictos, lo que puede llevar a la interferencia incorrecta con respecto a los conductores espacio-temporales. Aplicamos modelos dinámicos de ocupación a datos de depredación de cultivos por elefantes en India desde 2005 y hasta 2011 para estimar la incidencia de depredación de cultivos y modelar sus dinámicas como una función de covarianzas espacio-temporales mientras representan la detección imperfecta de los conflictos. La probabilidad de detectar conflictos fue constantemente <1.0 y estuvo influenciada negativamente por la distancia a las carreteras y el gradiente de elevación, promediando 0.08 - 0.56 en los periodos primarios (temporadas agrícolas distintas dentro de cada año). La probabilidad de la incidencia de depredación de cultivos varió desde 0.29 (SE 0.09) hasta 0.96 (SE 0.04). La probabilidad de que los sitios saqueados por elefantes en un periodo primario t no fueran saqueados en un periodo primario t + 1 varió con el gradiente de elevación en diferentes temporadas y estuvo influenciado negativamente por la precipitación promedio y la densidad de la aldea y positivamente por la distancia al los bosques. Los efectos negativos de la variación en la precipitación y la distancia a los bosques explicaron de mejor manera la variación en la probabilidad de que los sitios no saqueados por elefantes en el periodo primario t serían saqueados en el periodo primario t + 1. Con nuestra novedosa aplicación de los modelos de ocupación, separamos a los conductores espacio-temporales de los factores que influyen en cómo son observados, permitiendo así la inferencia más fiable de los mecanismos que son la base de los patrones observados de los conflictos. Encontramos que los factores asociados con el incremento en la disponibilidad y accesibilidad de los cultivos (p. ej.: la distancia a los bosques y los patrones de precipitación) fueron conductores clave en las dinámicas de depredación de cultivos de los elefantes. Tal entendimiento es esencial para una predicción rigurosa de conflictos futuros, un requerimiento crítico para el manejo efectivo de conflictos en el contexto de las crecientes interacción humano - animales silvestres.


Assuntos
Agricultura , Conflito Psicológico , Conservação dos Recursos Naturais/métodos , Elefantes/fisiologia , Comportamento Alimentar , Animais , Humanos , Índia , Modelos Teóricos , Probabilidade
11.
Ecology ; 95(2): 265-79, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24669721

RESUMO

The role of competition in structuring biotic communities at fine spatial scales is well known from detailed process-based studies. Our understanding of competition's importance at broader scales is less resolved and mainly based on static species distribution maps. Here, we bridge this gap by examining the joint occupancy dynamics of an invading species (Barred Owl, Strix varia) and a resident species (Northern Spotted Owl, Strix occidentalis caurina) in a 1000-km study area over a 22-year period. Past studies of these competitors have focused on the dynamics of one species at a time, hindering efforts to parse out the roles of habitat and competition and to forecast the future of the resident species. In addition, while these studies accounted for the imperfect detection of the focal species, no multi-season analysis of these species has accounted for the imperfect detection of the secondary species, potentially biasing inference. We analyzed survey data using models that combine the general multistate-multi-season occupancy modeling framework with autologistic modeling, allowing us to account for important aspects of our study system. We found that local extinction probability increases for each species when the other is present; however, the effect of the invader on the resident is greater. Although the species prefer different habitats, these habitats are highly correlated at the patch scale, and the impacts of invader on the resident are greatest in patches that would otherwise be optimal. As a consequence, competition leads to a weaker relationship between habitat and Northern Spotted Owl occupancy. Colonization and extinction rates of the invader are closely related to neighborhood occupancy, and over the first half of the study the availability of colonists limited the rate of population growth. Competition is likely to exclude the resident species, both through its immediate effects on local extinction and by indirectly lowering colonization rates as Northern Spotted Owl occupancy declines. Our analysis suggests that dispersal limitation affects both the invasion dynamics and the scale at which the effects of competition are observed. We also provide predictions regarding the potential costs and benefits of managing Barred Owl populations at different target levels.


Assuntos
Conservação dos Recursos Naturais , Ecossistema , Estrigiformes/classificação , Animais , Demografia , Extinção Biológica , Modelos Biológicos , Especificidade da Espécie , Estrigiformes/fisiologia
12.
Biometrics ; 70(2): 323-34, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24571715

RESUMO

In this article, we first extend the superpopulation capture-recapture model to multiple states (locations or populations) for two age groups., Wen et al., (2011; 2013) developed a new approach combining capture-recapture data with population assignment information to estimate the relative contributions of in situ births and immigrants to the growth of a single study population. Here, we first generalize Wen et al., (2011; 2013) approach to a system composed of multiple study populations (multi-state) with two age groups, where an imputation approach is employed to account for the uncertainty inherent in the population assignment information. Then we develop a different, individual-level mixture model approach to integrate the individual-level population assignment information with the capture-recapture data. Our simulation and real data analyses show that the fusion of population assignment information with capture-recapture data allows us to estimate the origination-specific recruitment of new animals to the system and the dispersal process between populations within the system. Compared to a standard capture-recapture model, our new models improve the estimation of demographic parameters, including survival probability, origination-specific entry probability, and especially the probability of movement between populations, yielding higher accuracy and precision.


Assuntos
Migração Animal , Modelos Biológicos , Modelos Estatísticos , Algoritmos , Animais , Biometria/métodos , Simulação por Computador , Dipodomys/genética , Dipodomys/fisiologia , Ecologia/estatística & dados numéricos , Ecossistema , Feminino , Funções Verossimilhança , Masculino , Dinâmica Populacional/estatística & dados numéricos
13.
J Anim Ecol ; 83(1): 276-85, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23957287

RESUMO

Many species are found today in the form of fragmented populations occupying patches of remnant habitat in human-altered landscapes. The persistence of these population networks requires a balance between extinction and colonization events assumed to be primarily related to patch area and isolation, but the contribution of factors such as the characteristics of patch and matrix habitats, the species' traits (habitat specialization and dispersal capabilities) and variation in climatic conditions have seldom been evaluated simultaneously. The identification of environmental variables associated with patch occupancy and turnover may be especially useful to enhance the persistence of multiple species under current global change. However, for robust inference on occupancy and related parameters, we must account for detection errors, a commonly overlooked problem that leads to biased estimates and misleading conclusions about population dynamics. Here, we provide direct empirical evidence of the effects of different environmental variables on the extinction and colonization rates of a rich butterfly community in the western Mediterranean. The analysis was based on a 17-year data set containing detection/nondetection data on 73 butterfly species for 26 sites in north-eastern Spain. Using multiseason occupancy models, which take into account species' detectability, we were able to obtain robust estimates of local extinction and colonization probabilities for each species and test the potential effects of site covariates such as the area of suitable habitat, topographic variability, landscape permeability around the site and climatic variability in aridity conditions. Results revealed a general pattern across species with local habitat composition and landscape features as stronger predictors of occupancy dynamics compared with topography and local aridity. Increasing area of suitable habitat in a site strongly decreased local extinction risks and, for a number of species, both higher amounts of suitable habitat and more permeable landscapes increased colonization rates. Nevertheless, increased topographic variability decreased the extinction risk of bad dispersers, a group of species with significantly lower colonization rates. Our models predicted higher sensitivity of the butterfly assemblages to deterministic changes in habitat features rather than to stochastic weather patterns, with some relationships being clearly dependent on the species' traits.


Assuntos
Borboletas/fisiologia , Clima , Ecossistema , Animais , Demografia , Região do Mediterrâneo , Modelos Biológicos , Fatores de Tempo
14.
Ecology ; 94(3): 610-7, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23687887

RESUMO

Occupancy statistical models that account for imperfect detection have proved very useful in several areas of ecology, including species distribution and spatial dynamics, disease ecology, and ecological responses to climate change. These models are based on the collection of multiple samples at each of a number of sites within a given season, during which it is assumed the species is either absent or present and available for detection while each sample is taken. However, for some species, individuals are only present or available for detection seasonally. We present a statistical model that relaxes the closure assumption within a season by permitting staggered entry and exit times for the species of interest at each site. Based on simulation, our open model eliminates bias in occupancy estimators and in some cases increases precision. The power to detect the violation of closure is high if detection probability is reasonably high. In addition to providing more robust estimation of occupancy, this model permits comparison of phenology across sites, species, or years, by modeling variation in arrival or departure probabilities. In a comparison of four species of amphibians in Maryland we found that two toad species arrived at breeding sites later in the season than a salamander and frog species, and departed from sites earlier.


Assuntos
Anuros/fisiologia , Modelos Biológicos , Modelos Estatísticos , Urodelos/fisiologia , Animais , Anuros/classificação , Mudança Climática , Dinâmica Populacional , Reprodução , Estações do Ano , Especificidade da Espécie
15.
Conserv Biol ; 27(6): 1245-53, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24001175

RESUMO

Although many taxa have declined globally, conservation actions are inherently local. Ecosystems degrade even in protected areas, and maintaining natural systems in a desired condition may require active management. Implementing management decisions under uncertainty requires a logical and transparent process to identify objectives, develop management actions, formulate system models to link actions with objectives, monitor to reduce uncertainty and identify system state (i.e., resource condition), and determine an optimal management strategy. We applied one such structured decision-making approach that incorporates these critical elements to inform management of amphibian populations in a protected area managed by the U.S. National Park Service. Climate change is expected to affect amphibian occupancy of wetlands and to increase uncertainty in management decision making. We used the tools of structured decision making to identify short-term management solutions that incorporate our current understanding of the effect of climate change on amphibians, emphasizing how management can be undertaken even with incomplete information. Estrategia para Monitorear y Manejar Disminuciones en una Comunidad de Anfibios.


Assuntos
Anfíbios/fisiologia , Conservação dos Recursos Naturais , Animais , Mudança Climática , Tomada de Decisões , District of Columbia , Densidade Demográfica , Dinâmica Populacional , Incerteza , Áreas Alagadas
16.
Appl Opt ; 52(12): 2531-45, 2013 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-23669659

RESUMO

This work describes several approaches to the estimation of target detection and identification probabilities as a function of target range. A Bayesian approach to estimation is adopted, whereby the posterior probability distributions associated with these probabilities are analytically derived. The parameter posteriors are then used to develop credible intervals quantifying the degree of uncertainty in the parameter estimates. In our first approach we simply show how these credible intervals evolve as a function of range. A second approach, also following the Bayesian philosophy, attempts to directly estimate the parameterized performance curves. This second approach makes efficient use of the available data and yields a distribution of probability versus range curves. Finally, we demonstrate both approaches using experimental data collected from wide field-of-view imagers focused on maritime targets.

17.
Proc Natl Acad Sci U S A ; 107(15): 6936-40, 2010 Apr 13.
Artigo em Inglês | MEDLINE | ID: mdl-20351269

RESUMO

Although populations of amphibians are declining worldwide, there is no evidence that salamanders occupying small streams are experiencing enigmatic declines, and populations of these species seem stable. Theory predicts that dispersal through multiple pathways can stabilize populations, preventing extinction in habitat networks. However, empirical data to support this prediction are absent for most species, especially those at risk of decline. Our mark-recapture study of stream salamanders reveals both a strong upstream bias in dispersal and a surprisingly high rate of overland dispersal to adjacent headwater streams. This evidence of route-dependent variation in dispersal rates suggests a spatial mechanism for population stability in headwater-stream salamanders. Our results link the movement behavior of stream salamanders to network topology, and they underscore the importance of identifying and protecting critical dispersal pathways when addressing region-wide population declines.


Assuntos
Urodelos/fisiologia , Anfíbios , Migração Animal , Animais , Conservação dos Recursos Naturais , Ecossistema , Extinção Biológica , Genética Populacional , Dinâmica Populacional , Especificidade da Espécie , Virginia , Movimentos da Água
18.
Proc Biol Sci ; 279(1728): 480-8, 2012 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-21697173

RESUMO

Metapopulation ecology has historically been rich in theory, yet analytical approaches for inferring demographic relationships among local populations have been few. We show how reverse-time multi-state capture-recapture models can be used to estimate the importance of local recruitment and interpopulation dispersal to metapopulation growth. We use 'contribution metrics' to infer demographic connectedness among eight local populations of banner-tailed kangaroo rats, to assess their demographic closure, and to investigate sources of variation in these contributions. Using a 7 year dataset, we show that: (i) local populations are relatively independent demographically, and contributions to local population growth via dispersal within the system decline with distance; (ii) growth contributions via local survival and recruitment are greater for adults than juveniles, while contributions involving dispersal are greater for juveniles; (iii) central populations rely more on local recruitment and survival than peripheral populations; (iv) contributions involving dispersal are not clearly related to overall metapopulation density; and (v) estimated contributions from outside the system are unexpectedly large. Our analytical framework can classify metapopulations on a continuum between demographic independence and panmixia, detect hidden population growth contributions, and make inference about other population linkage forms, including rescue effects and source-sink structures. Finally, we discuss differences between demographic and genetic population linkage patterns for our system.


Assuntos
Demografia , Dipodomys/fisiologia , Modelos Biológicos , Animais , Arizona , Feminino , Fluxo Gênico , Masculino , Dinâmica Populacional , Crescimento Demográfico , Estações do Ano , Fatores de Tempo
19.
Ecology ; 93(8): 1953-66, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22928423

RESUMO

In this paper, we modify dynamic occupancy models developed for detection-nondetection data to allow for the dependence of local vital rates on neighborhood occupancy, where neighborhood is defined very flexibly. Such dependence of occupancy dynamics on the status of a relevant neighborhood is pervasive, yet frequently ignored. Our framework permits joint inference about the importance of neighborhood effects and habitat covariates in determining colonization and extinction rates. Our specific motivation is the recent expansion of the Barred Owl (Strix varia) in western Oregon, USA, over the period 1990-2010. Because the focal period was one of dramatic range expansion and local population increase, the use of models that incorporate regional occupancy (sources of colonists) as determinants of dynamic rate parameters is especially appropriate. We began our analysis of 21 years of Barred Owl presence/nondetection data in the Tyee Density Study Area (TDSA) by testing a suite of six models that varied only in the covariates included in the modeling of detection probability. We then tested whether models that used regional occupancy as a covariate for colonization and extinction outperformed models with constant or year-specific colonization or extinction rates. Finally we tested whether habitat covariates improved the AIC of our models, focusing on which habitat covariates performed best, and whether the signs of habitat effects are consistent with a priori hypotheses. We conclude that all covariates used to model detection probability lead to improved AIC, that regional occupancy influences colonization and extinction rates, and that habitat plays an important role in determining extinction and colonization rates. As occupancy increases from low levels toward equilibrium, colonization increases and extinction decreases, presumably because there are more and more dispersing juveniles. While both rates are affected, colonization increases more than extinction decreases. Colonization is higher and extinction is lower in survey polygons with more riparian forest. The effects of riparian forest on extinction rates are greater than on colonization rates. Model results have implications for management of the invading Barred Owl, both through habitat alteration and removal.


Assuntos
Conservação dos Recursos Naturais , Ecossistema , Estrigiformes/fisiologia , Animais , Demografia , Modelos Biológicos , Oregon
20.
Ecology ; 93(7): 1741-51, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22919919

RESUMO

A productive way forward in studies of animal populations is to efficiently make use of all the information available, either as raw data or as published sources, on critical parameters of interest. In this study, we demonstrate two approaches to the use of multiple sources of information on a parameter of fundamental interest to ecologists: animal density. The first approach produces estimates simultaneously from two different sources of data. The second approach was developed for situations in which initial data collection and analysis are followed up by subsequent data collection and prior knowledge is updated with new data using a stepwise process. Both approaches are used to estimate density of a rare and elusive predator, the tiger, by combining photographic and fecal DNA spatial capture-recapture data. The model, which combined information, provided the most precise estimate of density (8.5 +/- 1.95 tigers/100 km2 [posterior mean +/- SD]) relative to a model that utilized only one data source (photographic, 12.02 +/- 3.02 tigers/100 km2 and fecal DNA, 6.65 +/- 2.37 tigers/100 km2). Our study demonstrates that, by accounting for multiple sources of available information, estimates of animal density can be significantly improved.


Assuntos
Tigres/fisiologia , Animais , Índia , Modelos Biológicos , Densidade Demográfica
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