Microstructure and crystallographic texture data in modern giant clam shells (Tridacna squamosa and Hippopus hippopus).

This article provides novel data on the microstructure and crystallographic texture of modern giant clam shells (Tridacna squamosa and Hippopus hippopus) from the Coral Triangle region of northeast Borneo. Giant clams have two aragonitic shell layers-the inner and outer shell layer. This dataset focuses on the inner shell layer as this is well preserved and not affected by diagenetic alteration. To prepare samples for analysis, shells were cut longitudinally at the axis of maximum growth and mounted onto thin sections. Data collection involved scanning electron microscopy (SEM) to determine microstructure and SEM based electron backscatter diffraction (EBSD) for quantitative measurement of crystallographic orientation and texture. Post-acquisition reanalysis of saved EBSD patterns to optimize data quality included changing the number of reflectors and band detection mode. We provide EBSD data as band contrast images and colour-coded orientation maps (inverse pole figure maps). Crystallographic co-orientation strength obtained with multiple of uniform density (MUD) values are derived from density distributed pole figures of indexed EBSD points. Raw EBSD data files are also given to ensure repeatability of the steps provided in this article and to allow extraction of further crystallographic properties for future researchers. Overall, this dataset provides 1. a better understanding of shell growth and biomineralization in giant clams and 2. important steps for optimizing data collection with EBSD analyses in biogenic carbonates.

Transient fertilization of a post-Sturtian Snowball ocean margin with dissolved phosphate by clay minerals.

Marine sedimentary rocks deposited across the Neoproterozoic Cryogenian Snowball interval, ~720-635 million years ago, suggest that post-Snowball fertilization of shallow continental margin seawater with phosphorus accelerated marine primary productivity, ocean-atmosphere oxygenation, and ultimately the rise of animals. However, the mechanisms that sourced and delivered bioavailable phosphate from land to the ocean are not fully understood. Here we demonstrate a causal relationship between clay mineral production by the melting Sturtian Snowball ice sheets and a short-lived increase in seawater phosphate bioavailability by at least 20-fold and oxygenation of an immediate post-Sturtian Snowball ocean margin. Bulk primary sediment inputs and inferred dissolved seawater phosphate dynamics point to a relatively low marine phosphate inventory that limited marine primary productivity and seawater oxygenation before the Sturtian glaciation, and again in the later stages of the succeeding interglacial greenhouse interval.

Rock-crushing derived hydrogen directly supports a methanogenic community: significance for the deep biosphere.

Microbial populations exist to great depths on Earth, but with apparently insufficient energy supply. Earthquake rock fracturing produces H2 from mechanochemical water splitting, however, microbial utilization of this widespread potential energy source has not been directly demonstrated. Here, we show experimentally that mechanochemically generated H2 from granite can be directly, long-term, utilized by a CH4 producing microbial community. This is consistent with CH4 formation in subsurface rock fracturing in the environment. Our results not only support water splitting H2 generation as a potential deep biosphere energy source, but as an oxidant must also be produced, they suggest that there is also a respiratory oxidant supply in the subsurface which is independent of photosynthesis. This may explain the widespread distribution of facultative aerobes in subsurface environments. A range of common rocks were shown to produce mechanochemical H2 , and hence, this process should be widespread in the subsurface, with the potential for considerable mineral fuelled CH4 production.

Aqueous copper sulfide clusters as intermediates during copper sulfide formation.

Using a combination of experimental techniques, we show that Cu(II) reduction by sulfide to Cu(I) occurs in solution prior to precipitation. EPR and 63Cu NMR data show that reduction to Cu(l) occurs during the reaction of equimolar amounts of Cu(II) with sulfide. 63Cu solution NMR data show that Cu(I) is soluble when bound to sulfide and is in a site of high symmetry. EPR data confirm that Cu(I) forms in solution and that the mineral covellite, CuS, contains only Cu(I). Mass spectrometry data from covellite as well as laboratory prepared solid and solution CuS materials indicate that Cu3S3 six-membered rings form in solution. These trinuclear Cu rings are the basic building blocks for aqueous CuS molecular clusters, which lead to CuS precipitation. In controlled titration experiments where sulfide is slowly added to Cu(II), Cu3S3 rings and tetranuclear Cu molecular clusters (Cu4S5, and Cu4S6) form; the rings are composed primarily of Cu(II). During cluster formation from Cu3S3 condensation, some Cu(II) is released back into solution, indicating that Cu(II) reduction does not occur until after Cu-S bond and higher order cluster formation. Analysis of the frontier molecular orbitals for Cu(II) and sulfide indicate that an outer-sphere electron transfer is symmetry forbidden. These results are consistent with the formation of CuS bonds prior to electron transfer, which occurs via an inner-sphere process.