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1.

Formation of prokaryote names from personal names: a review of current practice and a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

Pallen, Mark J.

Int J Syst Evol Microbiol ; 74(1)2024 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-38226641

2.

Request for an Opinion on the standing and retention of Firmicutes as a phylum name.

Pallen, Mark J.

Int J Syst Evol Microbiol ; 73(7)2023 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-37409558

3.

Use of connecting vowels after stems ending in the same vowel: a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

Pallen, Mark J.

Int J Syst Evol Microbiol ; 73(12)2023 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-38054495

4.

Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database.

Pallen, Mark J; Rodriguez-R, Luis M; Alikhan, Nabil-Fareed.

Int J Syst Evol Microbiol ; 72(9)2022 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-36125864

5.

The status Candidatus for uncultured taxa of Bacteria and Archaea: SWOT analysis.

Pallen, Mark J.

Int J Syst Evol Microbiol ; 71(9)2021 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-34516368

6.

Organization and architecture of AggR-dependent promoters from enteroaggregative Escherichia coli.

Yasir, Muhammad; Icke, Christopher; Abdelwahab, Radwa; Haycocks, James R; Godfrey, Rita E; Sazinas, Pavelas; Pallen, Mark J; Henderson, Ian R; Busby, Stephen J W; Browning, Douglas F.

Mol Microbiol ; 111(2): 534-551, 2019 02.

Artigo em Inglês | MEDLINE | ID: mdl-30485564

7.

Creation of Golden Gate constructs for gene doctoring.

Thomson, Nicholas M; Zhang, Chuanzhen; Trampari, Eleftheria; Pallen, Mark J.

BMC Biotechnol ; 20(1): 54, 2020 10 07.

Artigo em Inglês | MEDLINE | ID: mdl-33028286

8.

Corrigendum: Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database.

Pallen, Mark J; Rodriguez-R, Luis M; Alikhan, Nabil-Fareed.

Int J Syst Evol Microbiol ; 73(5)2023 May.

Artigo em Inglês | MEDLINE | ID: mdl-37171866

9.

The Gut Microbiota and the Hepatologist: Will Our Bugs Prove to be the Missing Link?

Pallen, Mark J; Quraishi, Mohammed N.

Dig Dis ; 35(4): 377-383, 2017.

Artigo em Inglês | MEDLINE | ID: mdl-28468018

10.

The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance.

Gehre, Florian; Otu, Jacob; Kendall, Lindsay; Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Kehinde, Aderemi O; Adebiyi, Oludele; Salako, Kayode; Baldeh, Ignatius; Jallow, Aisha; Jallow, Mamadou; Dagnra, Anoumou; Dissé, Kodjo; Kadanga, Essosimna A; Idigbe, Emmanuel Oni; Onubogu, Catherine; Onyejepu, Nneka; Gaye-Diallo, Aissatou; Ba-Diallo, Awa; Rabna, Paulo; Mane, Morto; Sanogo, Moumine; Diarra, Bassirou; Dezemon, Zingue; Sanou, Adama; Senghore, Madikay; Kwambana-Adams, Brenda A; Demba, Edward; Faal-Jawara, Tutty; Kumar, Samrat; Tientcheu, Leopold D; Jallow, Adama; Ceesay, Samba; Adetifa, Ifedayo; Jaye, Assan; Pallen, Mark J; D'Alessandro, Umberto; Kampmann, Beate; Adegbola, Richard A; Mboup, Souleymane; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin.

BMC Med ; 14(1): 160, 2016 Nov 03.

Artigo em Inglês | MEDLINE | ID: mdl-27806714

11.

Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology.

Westblade, Lars F; van Belkum, Alex; Grundhoff, Adam; Weinstock, George M; Pamer, Eric G; Pallen, Mark J; Dunne, W Michael.

J Clin Microbiol ; 54(7): 1686-1693, 2016 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-26912755

12.

Complete genome sequence of Pig-tailed macaque rhadinovirus 2 and its evolutionary relationship with rhesus macaque rhadinovirus and human herpesvirus 8/Kaposi's sarcoma-associated herpesvirus.

Bruce, A Gregory; Thouless, Margaret E; Haines, Anthony S; Pallen, Mark J; Grundhoff, Adam; Rose, Timothy M.

J Virol ; 89(7): 3888-909, 2015 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-25609822

13.

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing.

Senghore, Madikay; Bayliss, Sion C; Kwambana-Adams, Brenda A; Foster-Nyarko, Ebenezer; Manneh, Jainaba; Dione, Michel; Badji, Henry; Ebruke, Chinelo; Doughty, Emma L; Thorpe, Harry A; Jasinska, Anna J; Schmitt, Christopher A; Cramer, Jennifer D; Turner, Trudy R; Weinstock, George; Freimer, Nelson B; Pallen, Mark J; Feil, Edward J; Antonio, Martin.

Appl Environ Microbiol ; 82(19): 5910-7, 2016 10 01.

Artigo em Inglês | MEDLINE | ID: mdl-27474712

14.

An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana.

Kwambana-Adams, Brenda Anna; Asiedu-Bekoe, Franklin; Sarkodie, Badu; Afreh, Osei Kuffour; Kuma, George Khumalo; Owusu-Okyere, Godfred; Foster-Nyarko, Ebenezer; Ohene, Sally-Ann; Okot, Charles; Worwui, Archibald Kwame; Okoi, Catherine; Senghore, Madikay; Otu, Jacob Kweku; Ebruke, Chinelo; Bannerman, Richard; Amponsa-Achiano, Kwame; Opare, David; Kay, Gemma; Letsa, Timothy; Kaluwa, Owen; Appiah-Denkyira, Ebenezer; Bampoe, Victor; Zaman, Syed M A; Pallen, Mark J; D'Alessandro, Umberto; Mwenda, Jason M; Antonio, Martin.

BMC Infect Dis ; 16(1): 575, 2016 10 18.

Artigo em Inglês | MEDLINE | ID: mdl-27756235

15.

Towards standardisation of naming novel prokaryotic taxa in the age of high-throughput microbiology.

Hildebrand, Falk; Pallen, Mark J; Bork, Peer.

Gut ; 69(7): 1358-1359, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-31203204

16.

Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure.

Webber, Mark A; Whitehead, Rebekah N; Mount, Manuella; Loman, Nick J; Pallen, Mark J; Piddock, Laura J V.

J Antimicrob Chemother ; 70(8): 2241-8, 2015 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-25953808

17.

Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4.

Rohde, Holger; Qin, Junjie; Cui, Yujun; Li, Dongfang; Loman, Nicholas J; Hentschke, Moritz; Chen, Wentong; Pu, Fei; Peng, Yangqing; Li, Junhua; Xi, Feng; Li, Shenghui; Li, Yin; Zhang, Zhaoxi; Yang, Xianwei; Zhao, Meiru; Wang, Peng; Guan, Yuanlin; Cen, Zhong; Zhao, Xiangna; Christner, Martin; Kobbe, Robin; Loos, Sebastian; Oh, Jun; Yang, Liang; Danchin, Antoine; Gao, George F; Song, Yajun; Li, Yingrui; Yang, Huanming; Wang, Jian; Xu, Jianguo; Pallen, Mark J; Wang, Jun; Aepfelbacher, Martin; Yang, Ruifu.

N Engl J Med ; 365(8): 718-24, 2011 Aug 25.

Artigo em Inglês | MEDLINE | ID: mdl-21793736

18.

Bacterial pathogenomics.

Pallen, Mark J; Wren, Brendan W.

Nature ; 449(7164): 835-42, 2007 Oct 18.

Artigo em Inglês | MEDLINE | ID: mdl-17943120

19.

Translation of a minigene in the 5' leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene.

Islam, Md Shahidul; Shaw, Robert K; Frankel, Gad; Pallen, Mark J; Busby, Stephen J W.

Biochem J ; 441(1): 247-53, 2012 Jan 01.

Artigo em Inglês | MEDLINE | ID: mdl-21973189

20.

A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.

Loman, Nicholas J; Constantinidou, Chrystala; Christner, Martin; Rohde, Holger; Chan, Jacqueline Z-M; Quick, Joshua; Weir, Jacqueline C; Quince, Christopher; Smith, Geoffrey P; Betley, Jason R; Aepfelbacher, Martin; Pallen, Mark J.

JAMA ; 309(14): 1502-10, 2013 Apr 10.

Artigo em Inglês | MEDLINE | ID: mdl-23571589

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Formation of prokaryote names from personal names: a review of current practice and a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

Request for an Opinion on the standing and retention of Firmicutes as a phylum name.

Use of connecting vowels after stems ending in the same vowel: a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database.

The status Candidatus for uncultured taxa of Bacteria and Archaea: SWOT analysis.

Organization and architecture of AggR-dependent promoters from enteroaggregative Escherichia coli.

Creation of Golden Gate constructs for gene doctoring.

Corrigendum: Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database.

The Gut Microbiota and the Hepatologist: Will Our Bugs Prove to be the Missing Link?

The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance.

Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology.

Complete genome sequence of Pig-tailed macaque rhadinovirus 2 and its evolutionary relationship with rhesus macaque rhadinovirus and human herpesvirus 8/Kaposi's sarcoma-associated herpesvirus.

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing.

An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana.

Towards standardisation of naming novel prokaryotic taxa in the age of high-throughput microbiology.

Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure.

Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4.

Bacterial pathogenomics.

Translation of a minigene in the 5' leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene.

A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.