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1.
J Phys Chem A ; 127(29): 5979-5985, 2023 Jul 27.
Artigo em Inglês | MEDLINE | ID: mdl-37436458

RESUMO

Conical intersections are crossing points or lines between two or more adiabatic electronic potential energy surfaces in the multidimensional coordinate space of colliding atoms and molecules. Conical intersections and corresponding nonadiabatic coupling can greatly affect molecular dynamics and chemical properties. In this paper, we predict significant or measurable nonadiabatic effects in an ultracold atom-ion charge-exchange reaction in the presence of laser-induced conical intersections (LICIs). We investigate the fundamental physics of these LICIs on molecular reactivity under unique conditions: those of relatively low laser intensity of 108 W/cm2 and ultracold temperatures below 1 mK. We predict irregular interference effects in the charge-exchange rate coefficients between K and Ca+ as functions of the laser frequency. These irregularities occur in our system due to the presence of two LICIs. To further elucidate the role of the LICIs on the reaction dynamics, we compare these rate coefficients with those computed for a system where the CIs have been "removed". In the laser frequency window, where conical interactions are present, the difference in rate coefficients can be as large as 1 × 10-9 cm3/s.

2.
Sensors (Basel) ; 23(2)2023 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-36679625

RESUMO

This paper presents the first results of a study of the LH transition on the new spherical Globus-M2 tokamak using the Doppler backscattering (DBS) diagnostic. New data characterizing the H-mode of discharges with higher values of the plasma parameters, such as magnetic field Bt up to 0.9 T and plasma current Ip up to 450 kA, were collected and analyzed. An upgraded neutral beam injection (NBI) system was used to initiate the LH transition. DBS allows the measurement of the poloidal rotation velocity and the turbulence amplitude of the plasma. The multi-frequency DBS system installed on Globus-M2 can simultaneously collect data in different areas spanning from the separatrix to the plasma core. This allowed for the radial profiles of the rotation velocity and electric field to be calculated before and after the LH transition. In addition, the values and temporal evolution of the velocity shear were obtained. The associated turbulence suppression after the transition to the H-mode was investigated using DBS.


Assuntos
Líquidos Corporais , Eletricidade , Campos Magnéticos , Plasma , Rotação
3.
Int J Mol Sci ; 25(1)2023 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-38203216

RESUMO

The methylation of cytosines at CpG sites in DNA, carried out de novo by DNA methyltransferase Dnmt3a, is a basic epigenetic modification involved in gene regulation and genome stability. Aberrant CpG methylation in gene promoters leads to oncogenesis. In oncogene promoters, CpG sites often colocalize with guanine-rich sequences capable of folding into G-quadruplexes (G4s). Our in vitro study aimed to investigate how parallel G4s formed by a sequence derived from the c-MYC oncogene promoter region affect the activity of the Dnmt3a catalytic domain (Dnmt3a-CD). For this purpose, we designed synthetic oligonucleotide constructs: a c-MYC G4-forming oligonucleotide and linear double-stranded DNA containing an embedded stable extrahelical c-MYC G4. The topology and thermal stability of G4 structures in these DNA models were analyzed using physicochemical techniques. We showed that Dnmt3a-CD specifically binds to an oligonucleotide containing c-MYC G4, resulting in inhibition of its methylation activity. c-MYC G4 formation in a double-stranded context significantly reduces Dnmt3a-CD-induced methylation of a CpG site located in close proximity to the quadruplex structure; this effect depends on the distance between the non-canonical structure and the specific CpG site. One would expect DNA hypomethylation near the G4 structure, while regions distant from this non-canonical form would maintain a regular pattern of high methylation levels. We hypothesize that the G4 structure sequesters the Dnmt3a-CD and impedes its proper binding to B-DNA, resulting in hypomethylation and activation of c-MYC transcription.


Assuntos
DNA de Forma B , Quadruplex G , Genes myc , Metilases de Modificação do DNA , Oncogenes , Oligonucleotídeos , Regiões Promotoras Genéticas , Metilação
4.
J Chem Phys ; 157(15): 154310, 2022 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-36272794

RESUMO

Ytterbium monohydroxide is a promising molecule in the search for new physics. It is well known that levels of opposite parity, separated by energy split, the so-called l-doublets, define the experimental electric field strength required for molecule polarization. In addition, in our previous paper [Phys. Rev. A 105, L050801 (2022)], we have shown that the value of l-doubling directly influences the sensitivity of linear triatomic molecules toward the P,T-odd effects. In our work [J. Chem. Phys. 155, 164301 (2021)], we have calculated the value of l-doubling for YbOH molecules with the approximation of fixed O-H bond length. Taking the importance of this property into account, in the present study, we consider the additional degree of freedom corresponding to ligand (OH) deformation.

5.
J Vis ; 22(1): 1, 2022 01 04.
Artigo em Inglês | MEDLINE | ID: mdl-34982105

RESUMO

Shape is an interesting property of objects because it is used in ordinary discourse in ways that seem to have little connection to how it is typically defined in mathematics. The present article describes how the concept of shape can be grounded within Euclidean and non-Euclidean geometry and also to human perception. It considers the formal methods that have been proposed for measuring the differences among shapes and how the performance of those methods compares with shape difference thresholds of human observers. It discusses how different types of shape change can be perceptually categorized. It also evaluates the specific data structures that have been used to represent shape in models of both human and machine vision, and it reviews the psychophysical evidence about the extent to which those models are consistent with human perception. Based on this review of the literature, we argue that shape is not one thing but rather a collection of many object attributes, some of which are more perceptually salient than others. Because the relative importance of these attributes can be context dependent, there is no obvious single definition of shape that is universally applicable in all situations.


Assuntos
Percepção de Forma , Humanos , Matemática
6.
J Vis ; 22(4): 16, 2022 03 02.
Artigo em Inglês | MEDLINE | ID: mdl-35344020

RESUMO

Yu, Todd, and Petrov (2021) and Yu, Petrov, and Todd (2021) investigated failures of shape constancy that occur when objects are viewed stereoscopically at different distances. Although this result has been reported previously with simple objects such as pyramids or cylinders, we examined more complex objects with bilateral symmetry to test the claim by Li, Sawada, Shi, Kwon, and Pizlo (2011) that the perception of those objects is veridical. Sawada and Pizlo (2022) offer several criticisms of our experiments, but they seem to suggest that the concept of shape is defined by what is computable by their model. If stimuli are used that cannot be discriminated by their model, they are dismissed as degenerate, and tasks that cannot be performed by their model are assumed to be based on something other than shape. This allows them to disregard empirical evidence that is inconsistent with their model. We argue, in contrast, that all reliable aspects of shape perception are deserving of explanation. We also argue that there are many different attributes of shape and many different sources of information about shape that may be relevant in different contexts. It is unlikely that all of them can be explained by a single model.


Assuntos
Percepção de Profundidade , Percepção de Forma , Humanos
7.
Inorg Chem ; 60(5): 3291-3304, 2021 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-33570922

RESUMO

In this work, we demonstrate the fundamental relationships between stability constants and periodic, acid-base, and structural parameters for complexes of some 1,3-diketones. The four analogues of hexafluoroacetylacetone-2-thenoyltrifluoroacetone, 2-furoyltrifluoroacetone, benzoyltrifluoroacetone, and 2-naphthyltrifluoroacetone-have been studied as chelating ligands for 16 rare-earth metals (Sc, Y, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, and Lu) in aqueous solutions. Systems have been investigated spectrophotometrically using a multiwave nonlinear least-squares regression algorithm for data processing. Conditional stability constants were obtained for a wide pH region (2.0-5.4) at constant ionic strength (I = 0.5 M, NaCl). To receive the apparent ("true") equilibrium parameters, acid-base and keto-enol characteristics of the studied ligands have been described and revised for specific conditions. Dissociation constants were obtained in citrate-phosphate buffer media and protonation parameters were received in concentrated hydrochloric acid by the Cox-Yates method. The apparent formation constants for monocomplex species were obtained as thermodynamic invariants (depend only on the temperature) for each ligand and lie from 4.2 to 12.7 logarithmic units. Although the studied ligands have similar values of pKa, the stabilities of their complexes vary considerably. Systematic analysis of 64 apparent stability constants demonstrates that the force of interaction between the metals and nonsymmetric ß-diketones increases as 2-furoyltrifluoroacetone < 2-thenoyltrifluoroacetone < benzoyltrifluoroacetone < 2-naphthyltrifluoroacetone. The studied ligands display varying degrees of the correlation between the periodic parameters and formation constants. Naphthyltrifluoroacetone and its complexes with heavy lanthanides exhibit a clear trend in properties with increasing ionic potential. In general, the received set of data can be described from purely electrostatic grounds within the framework of the periodic law. Spectral, keto-enol, acid-base, and complexing properties were reproduced using density functional theory modeling and explain some of the regularities discovered.

8.
J Chem Phys ; 155(16): 164301, 2021 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-34717359

RESUMO

The spectrum of triatomic molecules with close rovibrational opposite parity levels is sensitive to the P,T-odd effects. This makes them a convenient platform for the experimental search of a new physics. Among the promising candidates, one may distinguish YbOH as a non-radioactive compound with a heavy atom. The energy gap between levels of opposite parity, l-doubling, is of great interest as it determines the electric field strength required for the full polarization of the molecule. Likewise, the influence of the bending and stretching modes on the sensitivities to the P,T-violation requires a thorough investigation since the measurement would be performed on the excited vibrational states. This motivates us to obtain the rovibrational nuclear wavefunctions, taking into account the anharmonicity of the potential. As a result, we get the values of Eeff and Es for the lowest excited vibrational state and determine the l-doubling.

9.
J Vis ; 21(6): 5, 2021 06 07.
Artigo em Inglês | MEDLINE | ID: mdl-34115109

RESUMO

Two shape matching experiments examined the effects of viewing distance and object size on observers' judgments of 3D metric shape under binocular viewing. Unlike previous studies on this topic, the stimuli were specifically designed to satisfy the minimal conditions for computing veridical shape from symmetry. Concretely, the stimuli were complex, mirror-symmetric polyhedra whose symmetry planes were oriented at an angle of 45o relative to the line of sight in a shape-matching task. Although it is mathematically possible to accurately compute the 3D shapes of these stimuli using relatively simple algorithms, the results indicated that human observers are unable to do so. Indeed, the apparent shapes of the objects were systematically expanded or compressed in depth as a function of viewing distance, in exactly the same way as has been reported for simpler stimuli that do not satisfy the minimal conditions for an accurate computational analysis. For objects presented at near distances, we also obtained statistically significant effects of object size on observers' shape judgments.


Assuntos
Percepção de Profundidade , Julgamento , Percepção de Distância , Humanos
10.
Opt Express ; 28(6): 7759-7770, 2020 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-32225414

RESUMO

To substitute conventional pigments, which often are toxic or suffer from fading in ultraviolet light, non-iridescent structural colors should demonstrate high spectral selectivity, while being also mechanically stable. However, conventional photonic glass (PhG) shows low color saturation due to the gradual transition in the reflection spectrum and low mechanical stability due to weak interparticle attachment. Here, a PhG with sharp spectral transition in comparison with the conventional full sphere PhG is designed by a conformal coating via atomic layer deposition (ALD) onto an organic PhG template. The ALD deposition allows to control the film thickness precisely for the highly saturated color. This structure can be described by hollow particle motifs with the effective size larger than the interparticle distance. Such unusual PhG is motivated by the achievable features in the spatial Fourier transform of a disordered assembly of such motifs. The surface-templated inverse PhG shows much higher color saturation than the direct PhG from full spheres. Moreover, the dense and solid connected shell will be beneficial for mechanical stability. These results pave the way for highly saturated structural colors. The demonstrated sharp spectral selection feature can be also considered for many related applications such as sunscreens, photovoltaics and radiative cooling by adjusting the reflection transition to the required wavelength. This can be achieved by proportionally scaling the motif and lattice dimensions as well as the film thickness.

11.
Opt Express ; 28(26): 39067-39075, 2020 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-33379464

RESUMO

The non-steady-state photoelectromotive force is excited in a monoclinic gallium oxide crystal at wavelength λ = 457 nm. The crystal grown in an oxygen atmosphere is insulating and highly transparent for a visible light, nevertheless, the formation of dynamic space-charge gratings and observation of the photo-EMF signal is achieved without application of any electric field to the sample. The dependencies of the signal amplitude on the frequency of phase modulation, light intensity, spatial frequency and light polarization are measured. The material demonstrates the anisotropy along the [100] and [010] directions, namely, there is a small difference in the transport parameters and a pronounced polarization dependence of the signal. The crystal's photoconductivity, responsivity and diffusion length of electrons are estimated for the chosen light wavelength and compared with the ones for other wide-bandgap crystals.

12.
Phys Chem Chem Phys ; 22(19): 10870-10881, 2020 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-32367082

RESUMO

We present experimental evidence of charge exchange between laser-cooled potassium 39K atoms and calcium 40Ca+ ions in a hybrid atom-ion trap and give quantitative theoretical explanations for the observations. The 39K atoms and 40Ca+ ions are held in a magneto-optical (MOT) and a linear Paul trap, respectively. Fluorescence detection and high resolution time of flight mass spectra for both species are used to determine the remaining number of 40Ca+ ions, the increasing number of 39K+ ions, and 39K number density as functions of time. Simultaneous trap operation is guaranteed by alternating periods of MOT and 40Ca+ cooling lights, thus avoiding direct ionization of 39K by the 40Ca+ cooling light. We show that the K-Ca+ charge-exchange rate coefficient increases linearly from zero with 39K number density and the fraction of 40Ca+ ions in the 4p 2P1/2 electronically-excited state. Combined with our theoretical analysis, we conclude that these data can only be explained by a process that starts with a potassium atom in its electronic ground state and a calcium ion in its excited 4p 2P1/2 state producing ground-state 39K+ ions and metastable, neutral Ca (3d4p 3P1) atoms, releasing only 150 cm-1 equivalent relative kinetic energy. Charge-exchange between either ground- or excited-state 39K and ground-state 40Ca+ is negligibly small as no energetically-favorable product states are available. Our experimental and theoretical rate coefficients are in agreement given the uncertainty budgets.

13.
Nature ; 507(7493): 475-9, 2014 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-24670766

RESUMO

Atomic and molecular samples reduced to temperatures below one microkelvin, yet still in the gas phase, afford unprecedented energy resolution in probing and manipulating the interactions between their constituent particles. As a result of this resolution, atoms can be made to scatter resonantly on demand, through the precise control of a magnetic field. For simple atoms, such as alkalis, scattering resonances are extremely well characterized. However, ultracold physics is now poised to enter a new regime, where much more complex species can be cooled and studied, including magnetic lanthanide atoms and even molecules. For molecules, it has been speculated that a dense set of resonances in ultracold collision cross-sections will probably exhibit essentially random fluctuations, much as the observed energy spectra of nuclear scattering do. According to the Bohigas-Giannoni-Schmit conjecture, such fluctuations would imply chaotic dynamics of the underlying classical motion driving the collision. This would necessitate new ways of looking at the fundamental interactions in ultracold atomic and molecular systems, as well as perhaps new chaos-driven states of ultracold matter. Here we describe the experimental demonstration that random spectra are indeed found at ultralow temperatures. In the experiment, an ultracold gas of erbium atoms is shown to exhibit many Fano-Feshbach resonances, of the order of three per gauss for bosons. Analysis of their statistics verifies that their distribution of nearest-neighbour spacings is what one would expect from random matrix theory. The density and statistics of these resonances are explained by fully quantum mechanical scattering calculations that locate their origin in the anisotropy of the atoms' potential energy surface. Our results therefore reveal chaotic behaviour in the native interaction between ultracold atoms.

14.
Opt Express ; 27(15): 21273-21284, 2019 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-31510208

RESUMO

The nonlinear Schrödinger equation based on slowly varying approximation is usually applied to describe the pulse propagation in nonlinear waveguides. However, for the case of the front induced transitions (FITs), the pump effect is well described by the dielectric constant perturbation in space and time. Thus, a linear Schrödinger equation (LSE) can be used. Also, in waveguides with weak dispersion the spatial evolution of the pulse temporal profile is usually tracked. Such a formulation becomes impossible for optical systems for which the group index or higher dispersion terms diverge as is the case near the band edge of photonic crystals. For the description of FITs in such systems a linear Schrödinger equation can be used where temporal evolution of the pulse spatial profile is tracked instead of tracking the spatial evolution. This representation provides the same descriptive power and can easily deal with zero group velocities. Furthermore, the Schrödinger equation with temporal evolution can describe signal pulse reflection from both static and counter-propagating fronts, in contrast to the Schrödinger equation with spatial evolution which is bound to forward propagation. Here, we discuss the two approaches and apply the LSE with temporal evolution for systems close to the band edge where the group velocity vanishes by simulating intraband indirect photonic transitions. We also compare the numerical results with the theoretical predictions from the phase continuity criterion for complete transitions.

15.
Opt Lett ; 44(1): 175-178, 2019 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-30645578

RESUMO

2D integrating cells provide long optical path lengths on a chip by multiple reflections at highly reflective mirrors similar to integrating spheres in free space. Therefore, they build a promising platform for integrated optical absorption sensing. Here, we present first absorption measurements of free carriers generated by a modulated pump laser inside a 2D integrating cell in a silicon slab. The results can be used to evaluate the lifetimes of free carriers in silicon slabs for integrated optics. Employing a silicon-on-insulator platform with a silicon thickness of 220 nm, we demonstrate measurements of the access free-carrier concentration on the order of 1-8·1015 cm-3 with lifetimes on the order of 0.1-1 µs governed by surface recombination at the silicon interfaces. The measured lifetimes are dependent on free-carrier concentration, which confirms previous observations. The presented free-carrier absorption experiment verifies the sensitivity of 2D integrating cells to changes in the absorption coefficient and thus demonstrates the potential of 2D integrating cells for absorption sensing.

16.
J Phys Chem A ; 123(23): 4873-4882, 2019 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-31117586

RESUMO

Different reactivity of homologous disulfides toward Pd2+ was previously reported: stepwise complexation to Pd2+ for l-cystine and cystamine ligands, while for dl-homocystine and 3,3'-dithiodipropionic acid, disulfide's disproportionation toward thiolate and sulfinic acid complexes is observed. The disulfide/thiolate interconversion of four different disulfide ligands in the presence of nonredox metal cation Pd2+ in aqueous solution has been computationally investigated. We see this different reactivity in different capacities of considered homologous disulfides to stabilize forming S,S'-binuclear complexes, which are believed to be key intermediates toward interconversion products. We thus devise a theoretical model that rationalizes experimentally observed phenomenon of disulfides different reactivity toward nonredox transition metal cation Pd2+.

17.
Opt Express ; 26(23): 30255-30266, 2018 Nov 12.
Artigo em Inglês | MEDLINE | ID: mdl-30469901

RESUMO

In guided-wave optics, using gratings to couple between single mode waveguides and single mode fibers and vice versa is well-established. In contrast, the coupling between multimode waveguides is more complex and a much less understood topic, even though multimode coupling is essential for the excitation of guided modes from spatially incoherent sources or for the extraction of spatially incoherent radiation from a guided-wave platform. Here, we present the design for a grating that couples multiple modes of a 2D slab waveguide into a multimode fiber and vice versa and discuss the corresponding challenges. We highlight the importance of matching mode numbers and scattering angles and show that the coupling efficiency can readily drop to low values. We present a rudimentary design that illustrates the key issues by demonstrating the coupling from a multimode fiber into a waveguide slab and back into another fiber, which achieves a total efficiency of -34 dB. By modeling the same geometry, we achieve good agreement, which allows us to explain the physics of the coupler and to suggest improvements. Future options are discussed to improve the coupling elements with a better directivity in order to achieve a maximal coupling efficiency. Our findings can be exploited for improving the multimode light injection into and out of integrated guided-wave optical systems.

18.
Opt Express ; 26(9): 11352-11365, 2018 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-29716057

RESUMO

Disordered structures producing a non-iridescent color impression have been shown to feature a spherically shaped Fourier transform of their refractive-index distribution. We determine the direction and efficiency of scattering from thin films made from such structures with the help of the Ewald sphere construction which follows from first-order scattering approximation. This way we present a simple geometrical argument why these structures are well suited for creating short wavelength colors like blue but are hindered from producing long wavelength colors like red. We also numerically synthesize a model structure dedicated to produce a sharp spherical shell in reciprocal space. The reflectivity of this structure as predicted by the first-order approximation is compared to direct electromagnetic simulations. The results indicate the Ewald sphere construction to constitute a simple geometrical tool that can be used to describe and to explain important spectral and directional features of the reflectivity. It is shown that total internal reflection in the film in combination with directed scattering can be used to obtain long wavelength structural colors.

19.
J Neurophysiol ; 118(6): 3051-3091, 2017 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-28835531

RESUMO

The physiological responses of simple and complex cells in the primary visual cortex (V1) have been studied extensively and modeled at different levels. At the functional level, the divisive normalization model (DNM; Heeger DJ. Vis Neurosci 9: 181-197, 1992) has accounted for a wide range of single-cell recordings in terms of a combination of linear filtering, nonlinear rectification, and divisive normalization. We propose standardizing the formulation of the DNM and implementing it in software that takes static grayscale images as inputs and produces firing rate responses as outputs. We also review a comprehensive suite of 30 empirical phenomena and report a series of simulation experiments that qualitatively replicate dozens of key experiments with a standard parameter set consistent with physiological measurements. This systematic approach identifies novel falsifiable predictions of the DNM. We show how the model simultaneously satisfies the conflicting desiderata of flexibility and falsifiability. Our key idea is that, while adjustable parameters are needed to accommodate the diversity across neurons, they must be fixed for a given individual neuron. This requirement introduces falsifiable constraints when this single neuron is probed with multiple stimuli. We also present mathematical analyses and simulation experiments that explicate some of these constraints.


Assuntos
Modelos Neurológicos , Neurônios/fisiologia , Córtex Visual/fisiologia , Animais , Humanos , Córtex Visual/citologia
20.
J Chem Phys ; 146(8): 084304, 2017 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-28249443

RESUMO

We study the low-temperature charge transfer reaction between a neutral atom and an ion under the influence of near-resonant laser light. By setting up a multi-channel model with field-dressed states, we demonstrate that the reaction rate coefficient can be enhanced by several orders of magnitude with laser intensities of 106 W/cm2 or larger. In addition, depending on laser frequency, one can induce a significant enhancement or suppression of the charge-exchange rate coefficient. For our intensities, multi-photon processes are not important.

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