Epigenetic control on transcription of vernalization genes and whole-genome gene expression profile induced by vernalization in common wheat.

Vernalization is necessary for winter wheat to flower. However, it is unclear whether vernalization is also required for spring wheat, which is frequently sown in fall, and what molecular mechanisms underlie the vernalization response in wheat varieties. In this study, we examined the molecular mechanisms that regulate vernalization response in winter and spring wheat varieties. For this purpose, we determined how major vernalization genes (VRN1, VRN2, and VRN3) respond to vernalization in these varieties and whether modifications to histones play a role in changes in gene expression. We also identified genes that are differentially regulated in response to vernalization in winter and spring wheat varieties. We found that in winter wheat, but not in spring wheat, VRN1 expression decreases when returned to warm temperature following vernalization. This finding may be associated with differences between spring and winter wheat in the levels of tri-methylation of lysine 27 on histone H3 (H3K27me3) and tri-methylation of lysine 4 on histone H3 (H3K4me3) at the VRN1 gene. Analysis of winter wheat transcriptomes before and after vernalization revealed that vernalization influences the expression of several genes, including those involved in leucine catabolism, cysteine biosynthesis, and flavonoid biosynthesis. These findings provide new candidates for further study on the mechanism of vernalization regulation in wheat.

Effect of harvest timing and plant parts on the nutritional and chemical profile of five potential fodder plants found in eastern coast of United Arab Emirates.

Selecting highly nutritive fodder plants in arid regions can be a key to improving the livestock productivity. This work explores the variation in nutritive value of the leaves, stem, and shoots of five potential fodder plants of the Emirates of Fujairah, Erucaria hispanica, Haplophyllum tuberculatum, Convolvulus virgatus, Teucrium stocksianum, and Cleome Ibrachycarpa. influenced by two weather conditions, winter and spring. The plant samples underwent mineral composition, proximate, phytochemical, and heavy metals and two-way ANOVA. Weather data were accessed from National Center of Meteorology (NCM). Our findings reveal significant influences of collection time and species on nutritive content. Shoots collected in March exhibited higher ash (6.167%), crude protein (11.9%), crude fiber (14.89%), dry matter (45.86%), and total digestive nutrients (TDS) (48.35%), with lower tannin (5.11%) compared to January. Conversely, January-collected shoots had greater total sugar content (1.28 g/100 g). Plant organs played a crucial role, with leaves surpassing stems in Mg, P, Ca, K, Na, Mn, Zn, and Ni. Leaves also showed higher crude protein (23.33%), dry matter (92.26%), total ash (4.8%), and TDS (87.58%) compared to stems, while stems exhibited elevated crude fiber (17.45%) and tannin (4.53%). There is a need to assess the bioactive compounds found in these fodder species for the enhancement its effective use and maximize browsing of these species.

Dissecting the molecular basis of spike traits by integrating gene regulatory networks and genetic variation in wheat.

Spike architecture influences both grain weight and grain number per spike, which are the two major components of grain yield in bread wheat (Triticum aestivum L.). However, the complex wheat genome and the influence of various environmental factors pose challenges in mapping the causal genes that affect spike traits. Here, we systematically identified genes involved in spike trait formation by integrating information on genomic variation and gene regulatory networks controlling young spike development in wheat. We identified 170 loci that are responsible for variations in spike length, spikelet number per spike, and grain number per spike through genome-wide association study and meta-QTL analyses. We constructed gene regulatory networks for young inflorescences at the double ridge stage and the floret primordium stage, in which the spikelet meristem and the floret meristem are predominant, respectively, by integrating transcriptome, histone modification, chromatin accessibility, eQTL, and protein-protein interactome data. From these networks, we identified 169 hub genes located in 76 of the 170 QTL regions whose polymorphisms are significantly associated with variation in spike traits. The functions of TaZF-B1, VRT-B2, and TaSPL15-A/D in establishment of wheat spike architecture were verified. This study provides valuable molecular resources for understanding spike traits and demonstrates that combining genetic analysis and developmental regulatory networks is a robust approach for dissection of complex traits.