Radiometric approach for the detection of picophytoplankton assemblages across oceanic fronts.

Cell abundances of Prochlorococcus, Synechococcus, and autotrophic picoeukaryotes were estimated in surface waters using principal component analysis (PCA) of hyperspectral and multispectral remote-sensing reflectance data. This involved the development of models that employed multilinear correlations between cell abundances across the Atlantic Ocean and a combination of PCA scores and sea surface temperatures. The models retrieve high Prochlorococcus abundances in the Equatorial Convergence Zone and show their numerical dominance in oceanic gyres, with decreases in Prochlorococcus abundances towards temperate waters where Synechococcus flourishes, and an emergence of picoeukaryotes in temperate waters. Fine-scale in-situ sampling across ocean fronts provided a large dynamic range of measurements for the training dataset, which resulted in the successful detection of fine-scale Synechococcus patches. Satellite implementation of the models showed good performance (R2 > 0.50) when validated against in-situ data from six Atlantic Meridional Transect cruises. The improved relative performance of the hyperspectral models highlights the importance of future high spectral resolution satellite instruments, such as the NASA PACE mission's Ocean Color Instrument, to extend our spatiotemporal knowledge about ecologically relevant phytoplankton assemblages.

Validation of the particle size distribution obtained with the laser in-situ scattering and transmission (LISST) meter in flow-through mode.

High spatial and temporal resolution estimates of the particle size distribution (PSD) in the surface ocean can enable improved understanding of biogeochemistry and ecosystem dynamics. Oceanic PSD measurements remain rare due to the time-consuming, manual sampling methods of common particle sizing instruments. Here, we evaluate the utility of measuring particle size data at high spatial resolution with a commercially-available submersible laser diffraction particle sizer (LISST-100X, Sequoia Scientific), operating in an automated mode with continuously flowing seawater. The LISST PSD agreed reasonably well with discrete PSD measurements obtained with a Coulter Counter and data from the flow-through sampling Imaging Flow-Cytobot, validating our methodology. Total particulate area and Volume derived from the LISST PSD agreed well with beam-attenuation and particulate organic carbon respectively, further validating the LISST PSD. Furthermore, When compared to the measured spectral characteristics of particulate beam attenuation, we find a significant correlation. However, no significant relationship between the PSD and spectral particulate backscattering was found.

Airborne and shipborne polarimetric measurements over open ocean and coastal waters: intercomparisons and implications for spaceborne observations.

Comprehensive polarimetric closure is demonstrated using observations from two in-situ polarimeters and Vector Radiative Transfer (VRT) modeling. During the Ship-Aircraft Bio-Optical Research (SABOR) campaign, the novel CCNY HyperSAS-POL polarimeter was mounted on the bow of the R/V Endeavor and acquired hyperspectral measurements from just above the surface of the ocean, while the NASA GISS Research Scanning Polarimeter was deployed onboard the NASA LaRC's King Air UC-12B aircraft. State-of-the-art, ancillary measurements were used to characterize the atmospheric and marine contributions in the VRT model, including those of the High Spectral Resolution Lidar (HSRL), the AErosol RObotic NETwork for Ocean Color (AERONET-OC), a profiling WETLabs ac-9 spectrometer and the Multi-spectral Volume Scattering Meter (MVSM). An open-ocean and a coastal scene are analyzed, both affected by complex aerosol conditions. In each of the two cases, it is found that the model is able to accurately reproduce the Stokes components measured simultaneously by each polarimeter at different geometries and viewing altitudes. These results are mostly encouraging, considering the different deployment strategies of RSP and HyperSAS-POL, which imply very different sensitivities to the atmospheric and ocean contributions, and open new opportunities in above-water polarimetric measurements. Furthermore, the signal originating from each scene was propagated to the top of the atmosphere to explore the sensitivity of polarimetric spaceborne observations to changes in the water type. As expected, adding polarization as a measurement capability benefits the detection of such changes, reinforcing the merits of the full-Stokes treatment in modeling the impact of atmospheric and oceanic constituents on remote sensing observations.

Characterizing the phytoplankton soup: pump and plumbing effects on the particle assemblage in underway optical seawater systems.

Many optical and biogeochemical data sets, crucial for algorithm development and satellite data validation, are collected using underway seawater systems over the course of research cruises. Phytoplankton and particle size distribution (PSD) in the ocean is a key measurement, required in oceanographic research and ocean optics. Using a data set collected in the North Atlantic, spanning different oceanic water types, we outline the differences observed in concurrent samples collected from two different flow-through systems: a permanently plumbed science seawater supply with an impeller pump, and an independent system with shorter, clean tubing runs and a diaphragm pump. We observed an average of 40% decrease in phytoplankton counts, and significant changes to the PSD in 10-45 µm range, when comparing impeller and diaphragm pump systems. Change in PSD seems to be more dependent on the type of the phytoplankton, than the size, with photosynthetic ciliates displaying the largest decreases in cell counts (78%). Comparison of chlorophyll concentrations across the two systems demonstrated lower sensitivity to sampling system type. Observed changes in several measured biogeochemical parameters (associated with phytoplankton size distribution) using the two sampling systems, should be used as a guide towards building best practices when it comes to the deployment of flow-through systems in the field for examining optics and biogeochemistry. Using optical models, we evaluated potential impact of the observed change in measured phytoplankton size spectra onto scattering measurements, resulting in significant differences between modeled optical properties across systems (~40%). Researchers should be aware of the methods used with previously collected data sets, and take into consideration the potentially significant and highly variable ecosystem-dependent biases in designing field studies in the future.

Spectral attenuation and backscattering as indicators of average particle size.

Measurements of the particulate beam attenuation coefficient at multiple wavelengths in the ocean typically exhibit a power law dependence on wavelength, and the slope of that power law has been related to the slope of the particle size distribution (PSD), when assumed to be a power law function of particle size. Recently, spectral backscattering coefficient measurements have been made using sensors deployed at moored observatories, on autonomous underwater vehicles, and even retrieved from space-based measurements of remote sensing reflectance. It has been suggested that these backscattering measurements may also be used to obtain information about the shape of the PSD. In this work, we directly compared field-measured PSD with multispectral beam attenuation and backscattering coefficients in a coastal bottom boundary later. The results of this comparison demonstrated that (1) the beam attenuation spectral slope correlates with the average particle size as suggested by theory for idealized particles and PSD; and (2) measurements of spectral backscattering also contain information reflective of the average particle size in spite of large deviations of the PSD from a spectral power law shape.

In situ optical measurement of particles in sediment plumes generated by a pre-prototype polymetallic nodule collector.

This study presents in situ, high-resolution optical measurements of particle size distributions (PSD) within sediment plumes generated by a pre-prototype deep seabed nodule collector vehicle operating in the abyssal Pacific Ocean. These measurements were obtained using a cutting-edge instrument, the LISST-RTSSV sensor. The data collected in situ reveal marked differences compared to previously reported laboratory-based, ex situ measurements. The grain size and other key particle shape characteristics are found to be dependent on multiple factors, including the collector vehicle maneuvers, the time elapsed following sediment discharge, and the complex hydrodynamic processes that generate the sediment in suspension. Significantly, the PSD from a highly complex succession of straight-line maneuvers converges to that of the canonical case of a simple straight-line driving maneuver within a timescale of ten minutes. Our results underscore the importance of parameterizing sediment plume transport models based on well-informed, comprehensive PSDs of detrained suspended sediment measured in situ at adequate timescales and in regions no longer strongly influenced by active and complex hydrodynamic processes.

Method for estimating mean particle size from high-frequency fluctuations in beam attenuation or scattering measurements.

The ability to estimate mean particle size using simple, low-power optical instruments promises to greatly expand coverage of particle size measurements in the ocean and advance understanding of myriad processes from sediment transport to biological carbon sequestration. Here we present a method for estimating the mean diameter of particles in suspension from high-resolution time series of simple optical measurements, such as beam attenuation or optical backscattering. Validation results from a laboratory clay aggregation experiment show a good fit with independent mean particle diameter estimates in the 10-80 µm diameter range, with relative biases of 17%-38% and relative root mean square errors of 10%-24%. In the 80-200 µm range, quantitative validation data were not available, but our mean diameter estimates correlated strongly with particle settling rates.

Remote identification of the invasive tunicate Didemnum vexillum using reflectance spectroscopy.

Benthic coverage of the invasive tunicate Didemnum vexillum on Georges Bank is largely unknown. Monitoring of D. vexillum coverage is vital to understanding the impact this invasive species will have on the productive fishing grounds of Georges Bank. Here we investigate using reflectance spectroscopy as a method for remote identification of D. vexillum. Using two different systems, a NightSea Dive-Spec and a combination of LED light sources with a hyperspectral radiometer, we collected in-situ measurements of reflectance from D. vexillum colonies. In comparison to reflectance spectra of other common benthic substrates, D. vexillum appears to have a unique spectral signature between 500 and 600 nm. Measuring the slope of the spectrum between these wavelengths appears to be the most robust method for spectral identification. Using derivative analysis or principal component analysis, the reflectance spectra of D. vexillum can be identified among numerous other spectra of common benthic substrates. An optical system consisting of a radiometer, light source, and camera was deployed on a remotely operated vehicle to test the feasibility of using reflectance to assess D. vexillum coverage. Preliminary results, analyzed here, prove the method to be successful for the areas we surveyed and open the way for its use on large-scale surveys.

Effects of particle aggregation and disaggregation on their inherent optical properties.

In many environments a large portion of particulate material is contained in aggregated particles; however, there is no validated framework to describe how aggregates in the ocean scatter light. Here we present the results of two experiments aiming to expose the role that aggregation plays in determining particle light scattering properties, especially in sediment-dominated coastal waters. First, in situ measurements of particle size distribution (PSD) and beam-attenuation were made with two laser particle sizing instruments (one equipped with a pump to subject the sample to aggregate-breaking shear), and measurements from the two treatments were compared. Second, clays were aggregated in the laboratory using salt, and observed over time by multiple instruments in order to examine the effects of aggregation and settling on spectral beam-attenuation and backscattering. Results indicate: (1) mass normalized attenuation and backscattering are only weakly sensitive to size changes due to aggregation in contrast to theory based on solid particles, (2) the spectral slope of beam-attenuation is indicative of changes in PSD but is complicated by instrument acceptance angle, and (3) the spectral shape of backscattering did not provide as clear a relationship with PSD as spectral beam attenuation, as is predicted by theory for solid spheres.

Effect of particulate aggregation in aquatic environments on the beam attenuation and its utility as a proxy for particulate mass.

Marine aggregates, agglomerations of particles and dissolved materials, are an important particulate pool in aquatic environments, but their optical properties are not well understood. To improve understanding of the optical properties of aggregates, two related studies are presented. In the first, an in situ manipulation experiment is described, in which beam attenuation of undisturbed and sheared suspensions are compared. Results show that in the sheared treatment bulk particle size decreases and beam attenuation increases, consistent with the hypothesis that a significant fraction of mass in suspension is contained in fragile aggregates. Interestingly, the magnitude of increase in beam attenuation is less than expected if the aggregates are modeled as solid spheres. Motivated by this result, a second study is presented, in which marine aggregates are modeled to assess how the beam attenuation of aggregates differs from that of their constituent particles and from solid particles of the same mass. The model used is based on that of Latimer [Appl. Opt. 24, 3231 (1985)] and mass specific attenuation is compared with that based on homogeneous and solid particles, the standard model for aquatic particles. In the modeling we use recent research relating size and solid fraction of aquatic aggregates. In contrast with Mie theory, this model provides a rather size-insensitive mass specific attenuation for most relevant sizes. This insensitivity is consistent with the observations that mass specific beam-attenuation of marine particles is in the range 0.2-0.6m(2)/gr despite large variability in size distribution and composition across varied aquatic environments.

Acceptance angle effects on the beam attenuation in the ocean.

The beam attenuation serves as a proxy for particulate matter and is a key parameter in visibility algorithms for the aquatic environment. It is well known, however, that the beam attenuation is a function of the acceptance angle of the transmissometer used to measure it. Here we compare eight different transmissometers with four different acceptance angles using four different deployment strategies and sites, and find that their mean attenuation values differ markedly and in a consistent way with instrument acceptance angle: smaller acceptance angles provide higher beam attenuation values. This difference is due to variations in scattered light collected with different acceptance angles and is neither constant nor easy to parameterize. Variability (in space or time) in the ratios of beam attenuations measured by two different instruments correlates, in most cases, with the particle size parameter (as expected from Mie theory), but this correlation is often weak and can be the opposite of expectations based on particle size changes. We recommended careful consideration of acceptance angle in applications of beam transmission data especially when comparing data from different instruments.

Calibrated near-forward volume scattering function obtained from the LISST particle sizer.

The physical nature of particles, such as size, shape, and composition govern their angular light scattering, which is described by the volume scattering function (VSF). Despite the fact that the VSF is one of the most important inherent optical properties, it has rarely been measured in aquatic environments since no commercial instrument exists to measure the full VSF in the field. The commonly used LISST (Laser In Situ Scattering and Transmissometry) particle sizer (Sequoia Scientific, http://www.sequoiasci.com) measures near-forward angular scattering of a laser source (lambda= 670 nm) at 32 logarithmically-spaced photodetectors arranged between 0.08 and 15 degrees and inverts the data to obtain particle size distribution (PSD). In order to calibrate the LISST to provide the near-forward VSF of unknown particle suspensions, we analyzed the scattering of light by polystyrene bead suspensions of known size distributions and composition, and empirically compared it with the results of Mie theory. This (1) allowed us to obtain a set of instrument specific scaling factors needed to retrieve the magnitude of the VSF and (2) provided validation that the shape of the VSF was appropriately obtained.