Detalhe da pesquisa
1.
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35671510
2.
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Brief Bioinform
; 22(2): 1848-1859, 2021 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32313939
3.
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach.
PLoS Comput Biol
; 18(12): e1010408, 2022 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-36508473
4.
Model learning to identify systemic regulators of the peripheral circadian clock.
Bioinformatics
; 37(Suppl_1): i401-i409, 2021 07 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-34252929
5.
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinformatics
; 36(16): 4473-4482, 2020 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32403123
6.
Graphical requirements for multistationarity in reaction networks and their verification in BioModels.
J Theor Biol
; 459: 79-89, 2018 12 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-30267790
7.
MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps.
J Integr Bioinform
; 2024 Feb 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-38314776
8.
A stronger necessary condition for the multistationarity of chemical reaction networks.
Bull Math Biol
; 75(11): 2289-303, 2013 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-24048547
9.
A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint.
NPJ Syst Biol Appl
; 9(1): 33, 2023 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-37454172
10.
Hybrid computational modeling highlights reverse warburg effect in breast cancer-associated fibroblasts.
Comput Struct Biotechnol J
; 21: 4196-4206, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37705596
11.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Front Immunol
; 14: 1282859, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-38414974
12.
A graphical method for reducing and relating models in systems biology.
Bioinformatics
; 26(18): i575-81, 2010 Sep 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-20823324
13.
A general computational method for robustness analysis with applications to synthetic gene networks.
Bioinformatics
; 25(12): i169-78, 2009 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-19477984
14.
Dynamics of the interlocked positive feedback loops explaining the robust epigenetic switching in Candida albicans.
J Theor Biol
; 258(1): 71-88, 2009 May 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-19490874
15.
Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors.
IEEE/ACM Trans Comput Biol Bioinform
; 15(4): 1138-1151, 2018.
Artigo
em Inglês
| MEDLINE | ID: mdl-29994637
16.
BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
Bioinformatics
; 22(14): 1805-7, 2006 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-16672256
17.
Model-based investigation of the circadian clock and cell cycle coupling in mouse embryonic fibroblasts: Prediction of RevErb-α up-regulation during mitosis.
Biosystems
; 149: 59-69, 2016 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-27443484
18.
A constraint solving approach to model reduction by tropical equilibration.
Algorithms Mol Biol
; 9(1): 24, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25493095
19.
Invariants and other structural properties of biochemical models as a constraint satisfaction problem.
Algorithms Mol Biol
; 7(1): 15, 2012 May 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-22642806
20.
A unique transformation from ordinary differential equations to reaction networks.
PLoS One
; 5(12): e14284, 2010 Dec 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-21203560