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1.
Chem Rev ; 122(10): 9943-10018, 2022 05 25.
Artigo em Inglês | MEDLINE | ID: mdl-35536915

RESUMO

Since the first pioneering studies on small deuterated peptides dating more than 20 years ago, 1H detection has evolved into the most efficient approach for investigation of biomolecular structure, dynamics, and interactions by solid-state NMR. The development of faster and faster magic-angle spinning (MAS) rates (up to 150 kHz today) at ultrahigh magnetic fields has triggered a real revolution in the field. This new spinning regime reduces the 1H-1H dipolar couplings, so that a direct detection of 1H signals, for long impossible without proton dilution, has become possible at high resolution. The switch from the traditional MAS NMR approaches with 13C and 15N detection to 1H boosts the signal by more than an order of magnitude, accelerating the site-specific analysis and opening the way to more complex immobilized biological systems of higher molecular weight and available in limited amounts. This paper reviews the concepts underlying this recent leap forward in sensitivity and resolution, presents a detailed description of the experimental aspects of acquisition of multidimensional correlation spectra with fast MAS, and summarizes the most successful strategies for the assignment of the resonances and for the elucidation of protein structure and conformational dynamics. It finally outlines the many examples where 1H-detected MAS NMR has contributed to the detailed characterization of a variety of crystalline and noncrystalline biomolecular targets involved in biological processes ranging from catalysis through drug binding, viral infectivity, amyloid fibril formation, to transport across lipid membranes.


Assuntos
Proteínas , Prótons , Espectroscopia de Ressonância Magnética , Ressonância Magnética Nuclear Biomolecular/métodos , Peptídeos , Proteínas/química
2.
Proc Natl Acad Sci U S A ; 118(1)2021 01 05.
Artigo em Inglês | MEDLINE | ID: mdl-33443172

RESUMO

Neurodegenerative disorders are frequently associated with ß-sheet-rich amyloid deposits. Amyloid-forming proteins can aggregate under different structural conformations known as strains, which can exhibit a prion-like behavior and distinct pathophenotypes. Precise molecular determinants defining strain specificity and cross-strain interactions (cross-seeding) are currently unknown. The HET-s prion protein from the fungus Podospora anserina represents a model system to study the fundamental properties of prion amyloids. Here, we report the amyloid prion structure of HELLF, a distant homolog of the model prion HET-s. We find that these two amyloids, sharing only 17% sequence identity, have nearly identical ß-solenoid folds but lack cross-seeding ability in vivo, indicating that prion specificity can differ in extremely similar amyloid folds. We engineer the HELLF sequence to explore the limits of the sequence-to-fold conservation and to pinpoint determinants of cross-seeding and prion specificity. We find that amyloid fold conservation occurs even at an exceedingly low level of identity to HET-s (5%). Next, we derive a HELLF-based sequence, termed HEC, able to breach the cross-seeding barrier in vivo between HELLF and HET-s, unveiling determinants controlling cross-seeding at residue level. These findings show that virtually identical amyloid backbone structures might not be sufficient for cross-seeding and that critical side-chain positions could determine the seeding specificity of an amyloid fold. Our work redefines the conceptual boundaries of prion strain and sheds light on key molecular features concerning an important class of pathogenic agents.


Assuntos
Amiloide/química , Amiloide/metabolismo , Príons/metabolismo , Sequência de Aminoácidos/genética , Amiloide/ultraestrutura , Proteínas Amiloidogênicas/química , Proteínas Amiloidogênicas/metabolismo , Sequência Conservada/genética , Proteínas Fúngicas/metabolismo , Modelos Biológicos , Podospora/genética , Agregados Proteicos/fisiologia , Dobramento de Proteína , Estrutura Terciária de Proteína , Alinhamento de Sequência
3.
Inorg Chem ; 62(18): 7032-7044, 2023 May 08.
Artigo em Inglês | MEDLINE | ID: mdl-37120844

RESUMO

Polynuclear molecular clusters offer an opportunity to design new hierarchical switchable materials with collective properties, based on variation of the chemical composition, size, shapes, and overall building blocks organization. In this study, we rationally designed and constructed an unprecedented series of cyanido-bridged nanoclusters realizing new undecanuclear topology: FeII[FeII(bzbpen)]6[WV(CN)8]2[WIV(CN)8]2·18MeOH (1), NaI[CoII(bzbpen)]6[WV(CN)8]3[WIV(CN)8]·28MeOH (2), NaI[NiII(bzbpen)]6[WV(CN)8]3[WIV(CN)8]·27MeOH (3), and CoII[CoII(R/S-pabh)2]6[WV(CN)8]2[WIV(CN)8]2·26MeOH [4R and 4S; bzbpen = N1,N2-dibenzyl-N1,N2-bis(pyridin-2-ylmethyl)ethane-1,2-diamine; R/S-pabh = (R/S)-N-(1-naphthyl)-1-(pyridin-2-yl)methanimine], of size up to 11 nm3, ca. 2.0 × 2.2 × 2.5 nm (1-3) and ca. 1.4 × 2.5 × 2.5 nm (4). 1, 2, and 4 exhibit site selectivity for the spin states and spin transition related to the structural speciation based on subtle exogenous and endogenous effects imposed on similar but distinguishable 3d metal-ion-coordination moieties. 1 exhibits a mid-temperature-range spin-crossover (SCO) behavior that is more advanced than the previously reported SCO clusters based on octacyanidometallates and an onset of SCO behavior close to room temperature. The latter feature is also present in 2 and 4, which suggests the emergence of CoII-centered SCO not observed in previous bimetallic cyanido-bridged CoII-WV/IV systems. In addition, reversible switching of the SCO behavior in 1 via a single-crystal-to-single-crystal transformation during desolvation was also documented.

4.
Proc Natl Acad Sci U S A ; 117(35): 21014-21021, 2020 09 01.
Artigo em Inglês | MEDLINE | ID: mdl-32817429

RESUMO

The protein AlkL is known to increase permeability of the outer membrane of bacteria for hydrophobic molecules, yet the mechanism of transport has not been determined. Differing crystal and NMR structures of homologous proteins resulted in a controversy regarding the degree of structure and the role of long extracellular loops. Here we solve this controversy by determining the de novo NMR structure in near-native lipid bilayers, and by accessing structural dynamics relevant to hydrophobic substrate permeation through molecular-dynamics simulations and by characteristic NMR relaxation parameters. Dynamic lateral exit sites large enough to accommodate substrates such as carvone or octane occur through restructuring of a barrel extension formed by the extracellular loops.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Proteínas de Bactérias/metabolismo , Bicamadas Lipídicas/metabolismo , Proteínas da Membrana Bacteriana Externa/química , Interações Hidrofóbicas e Hidrofílicas , Bicamadas Lipídicas/química , Imageamento por Ressonância Magnética/métodos , Espectroscopia de Ressonância Magnética/métodos , Lipídeos de Membrana/química , Lipídeos de Membrana/metabolismo , Proteínas de Membrana/metabolismo , Simulação de Dinâmica Molecular , Ressonância Magnética Nuclear Biomolecular/métodos , Permeabilidade , Estrutura Secundária de Proteína
5.
Aesthetic Plast Surg ; 47(5): 1725-1730, 2023 10.
Artigo em Inglês | MEDLINE | ID: mdl-36443419

RESUMO

BACKGROUND: Silicone breast augmentation remains one of the most common aesthetic surgery procedures, and 2022 marks the 60th anniversary of the first case. Recent studies suggest a link between double capsule (DC) formation and macro-textured devices. METHODS: Between 2010 and 2015, 268 aesthetic patients underwent bilateral mammary prosthesis exchange for indications including PIP exchange, adverse capsular contracture and ultrasonographic evidence of rupture. All surgery, in the form of implant exchange and capsulectomy, was undertaken by the senior author using standard techniques. A retrospective review was undertaken, and data analysed with descriptive statistics and Fisher's exact and Mann-Whitney U tests. RESULTS: Of 268 patients identified, 40 (14.9%) showed some degree of capsular duplication and bilateral involvement was marginally more common (52.5%). Two macroscopic patterns of duplication were observed: complete and subtotal. Complete DCs correlated with a clinical triad of extreme firmness, mobility and minimal-to-no pain. Whilst a wide range of manufacturers was represented, macro-textured devices were associated with the highest DC prevalence (58.3% vs. 5.6%) (Fisher's exact test p < 0.00001). Patients with DC had been implanted for less than half the time, median 52 versus. 120 months (p = 0.0003) of those without. DISCUSSION: An elevated prevalence of duplicate capsules in macro-textured prostheses is reconfirmed in addition to a novel symptom constellation that may assist with clinical diagnosis. Our study reinforces the aetiopathogenic influence of the elastomer in DC formation and reports DC for the first time in non-macrotextured implants. Single-surgeon cohort of 268 consecutive patients with 532 implants Statistically significant association of macro-textured devices with DC Statistically significant reduced duration of implantation of macro-textured devices First report of DC in non-macro-textured devices LEVEL OF EVIDENCE IV: This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 .


Assuntos
Implante Mamário , Implantes de Mama , Mamoplastia , Humanos , Implantes de Mama/efeitos adversos , Contratura Capsular em Implantes/epidemiologia , Contratura Capsular em Implantes/etiologia , Contratura Capsular em Implantes/cirurgia , Implante Mamário/efeitos adversos , Implante Mamário/métodos , Mamoplastia/métodos , Estudos Retrospectivos
6.
Angew Chem Int Ed Engl ; 60(5): 2330-2338, 2021 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-33124080

RESUMO

Bistable and stimuli-responsive molecule-based materials are promising candidates for the development of molecular switches and sensors for future technologies. The CN-bridged {NH4 [Ni(cyclam)][Fe(CN)6 ]⋅5 H2 O}n chain exists in two valence states: NiII -FeIII (1HT ) and NiIII -FeII (1LT ) and shows unique multiresponsivity under ambient conditions to various stimuli, including temperature, pressure, light, and humidity, which generate measurable response in the form of significant changes in magnetic susceptibility and color. The electron-transfer phase transition 1LT ↔1HT shows room-temperature thermal hysteresis, can be induced by irradiation, and shows high sensitivity to small applied pressure, which shifts it to higher temperatures. Additionally, it can be reversibly turned off by dehydration to the {NH4 [NiII (cyclam)][FeIII (CN)6 ]}n (1 d) phase, which features the NiII -FeIII valence state over the whole temperature range, but responds to pressure by yielding NiIII -FeII above 1.06 GPa.

7.
J Am Chem Soc ; 142(12): 5793-5799, 2020 03 25.
Artigo em Inglês | MEDLINE | ID: mdl-32129995

RESUMO

Thanks to magic-angle spinning (MAS) probes with frequencies of 60-100 kHz, the benefit of high-sensitivity 1H detection can now be broadly realized in biomolecular solid-state NMR for the analysis of microcrystalline, sedimented, or lipid-embedded preparations. Nonetheless, performing the assignment of all resonances remains a rate-limiting step in protein structural studies, and even the latest optimized protocols fail to perform this step when the protein size exceeds ∼20 kDa. Here, we leverage the benefits of fast (100 kHz) MAS and high (800 MHz) magnetic fields to design an approach that lifts this limitation. Through the creation, conservation, and acquisition of independent magnetization pathways within a single triple-resonance MAS NMR experiment, a single self-consistent data set can be acquired, providing enhanced sensitivity, reduced vulnerability to machine or sample instabilities, and highly redundant linking that supports fully automated peak picking and resonance assignment. The method, dubbed RAVASSA (redundant assignment via a single simultaneous acquisition), is demonstrated with the assignment of the largest protein to date in the solid state, the 42.5 kDa maltose binding protein, using a single fully protonated microcrystalline sample and 1 week of spectrometer time.


Assuntos
Proteínas de Escherichia coli/análise , Proteínas Ligantes de Maltose/análise , Escherichia coli/química , Ressonância Magnética Nuclear Biomolecular/métodos , Espectroscopia de Prótons por Ressonância Magnética/métodos
8.
Plant Cell ; 29(6): 1184-1195, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28522546

RESUMO

When plant-pathogenic oomycetes infect their hosts, they employ a large arsenal of effector proteins to establish a successful infection. Some effector proteins are secreted and are destined to be translocated and function inside host cells. The largest group of translocated proteins from oomycetes is the RxLR effectors, defined by their conserved N-terminal Arg-Xaa-Leu-Arg (RxLR) motif. However, the precise role of this motif in the host cell translocation process is unclear. Here, detailed biochemical studies of the RxLR effector AVR3a from the potato pathogen Phytophthora infestans are presented. Mass spectrometric analysis revealed that the RxLR sequence of native AVR3a is cleaved off prior to secretion by the pathogen and the N terminus of the mature effector was found likely to be acetylated. High-resolution NMR structure analysis of AVR3a indicates that the RxLR motif is well accessible to potential processing enzymes. Processing and modification of AVR3a is to some extent similar to events occurring with the export element (PEXEL) found in malaria effector proteins from Plasmodium falciparum These findings imply a role for the RxLR motif in the secretion of AVR3a by the pathogen, rather than a direct role in the host cell entry process itself.


Assuntos
Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Phytophthora infestans/metabolismo , Phytophthora infestans/patogenicidade , Solanum tuberosum/microbiologia , Motivos de Aminoácidos/genética , Motivos de Aminoácidos/fisiologia , Proteínas Fúngicas/genética , Espectrometria de Massas , Phytophthora infestans/genética
9.
Angew Chem Int Ed Engl ; 59(6): 2380-2384, 2020 02 03.
Artigo em Inglês | MEDLINE | ID: mdl-31657097

RESUMO

Narrow proton signals, high sensitivity, and efficient coherence transfers provided by fast magic-angle spinning at high magnetic fields make automated projection spectroscopy feasible for the solid-state NMR analysis of proteins. We present the first ultrahigh dimensional implementation of this approach, where 5D peak lists are reconstructed from a number of 2D projections for protein samples of different molecular sizes and aggregation states, which show limited dispersion of chemical shifts or inhomogeneous broadenings. The resulting datasets are particularly suitable to automated analysis and yield rapid and unbiased assignments of backbone resonances.


Assuntos
Ressonância Magnética Nuclear Biomolecular/métodos , Proteínas/química , Automação , Marcação por Isótopo , Superóxido Dismutase/química , Microglobulina beta-2/química
10.
J Am Chem Soc ; 141(48): 19067-19077, 2019 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-31747269

RESUMO

Magnetic photoswitching is a highly important but relatively rare phenomenon for enabling optical writing/reading of the magnetic state of a molecule. In this work, an unprecedented site-selective double photoswitching is reported from the assembly of two different "photomagnetic chromophores" into a single hexanuclear molecule: namely, a spin-crossover Fe(II) center exhibiting light-induced excited spin state trapping (LIESST) and a photochemically active octacyanometalate(IV) unit. Four different magnetization levels are accessible through the appropriate combination of violet/red light and temperature, results that highlight the potential of photomagnetic molecules as future molecular memory cells.

11.
Inorg Chem ; 58(9): 6052-6063, 2019 May 06.
Artigo em Inglês | MEDLINE | ID: mdl-31002260

RESUMO

We report a unique synthetic route toward the multistep spin crossover (SCO) effect induced by utilizing the partial ligand transformation during the crystallization process, which leads to the incorporation of three different FeII complexes into a single coordination framework. The 3-acetoxypyridine (3-OAcpy) molecules were introduced to the self-assembled FeII-[MIV(CN)8]4- (M = Mo, Nb) system in the aqueous solution which results in the partial hydrolysis of the ligand into 3-hydroxypyridine (3-OHpy). It gives two novel isostructural three-dimensional {FeII2(3-OAcpy)5(3-OHpy)3[MIV(CN)8]}· nH2O (M = Mo, n = 0, FeMo; M = Nb, n = 1, FeNb) coordination frameworks. They exhibit an unprecedented cyanido-bridged skeleton composed of {Fe3M2} n coordination nanotubes bonded by additional Fe complexes. These frameworks contain three types of Fe sites differing in the attached organic ligands, [Fe1(3-OAcpy)4(µ-NC)2], [Fe2(3-OHpy)4(µ-NC)2], and [Fe3(3-OAcpy)3(3-OHpy)(µ-NC)2], which lead to the thermal two-step FeII SCO, as proven by X-ray diffraction, magnetic susceptibility, UV-vis-NIR optical absorption, and 57Fe Mössbauer spectroscopy studies. The first step of SCO, going from room temperature to the 150-170 K range with transition temperatures of 245(5) and 283(5) K for FeMo and FeNb, respectively, is related to Fe1 sites, while the second step, occurring at the 50-140 K range with transition temperatures of 70(5) and 80(5) K for FeMo and FeNb, respectively, is related to Fe2 sites. The Fe3 site with both 3-OAcpy and 3-OHpy ligands does not undergo the SCO at all. The observed two-step SCO phenomenon is explained by the differences in the ligand field strength of the Fe complexes and the role of their alignment in the coordination framework. The simultaneous application of two related pyridine derivatives is the efficient synthetic route for the multistep FeII SCO in the cyanido-bridged framework which is a promising step toward rational design of advanced spin transition molecular switches.

12.
Methods ; 138-139: 26-38, 2018 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-29627359

RESUMO

The amyloid fold is structurally characterized by a typical cross-ß architecture, which is under debate to represent an energy-favourable folding state that many globular or natively unfolded proteins can adopt. Being initially solely associated with amyloid fibrils observed in the propagation of several neurodegenerative disorders, the discovery of non-pathological (or "functional") amyloids in many native biological processes has recently further intensified the general interest invested in those cross-ß supramolecular assemblies. The insoluble and non-crystalline nature of amyloid fibrils and their usually inhomogeneous appearance on the mesoscopic level pose a challenge to biophysical techniques aiming at an atomic-level structural characterization. Solid-state NMR spectroscopy (SSNMR) has granted breakthroughs in structural investigations on amyloid fibrils ranging from the assessment of the impact of polymorphism in disease development to the 3D atomic structure determination of amyloid fibrils. First landmark studies towards the characterization of atomic structures and interactions involving functional amyloids have provided new impulses in the understanding of the role of the amyloid fold in native biological functions. Over the last decade many strategies have been developed in protein isotope labelling, NMR resonance assignment, distance restraint determination and 3D structure calculation of amyloid fibrils based on SSNMR approaches. We will here discuss the emerging concepts and state-of-the-art methods related to the assessment of amyloid structures and interactions involving amyloid entities by SSNMR.


Assuntos
Amiloide/química , Ressonância Magnética Nuclear Biomolecular/métodos , Humanos , Marcação por Isótopo , Conformação Proteica
13.
Proc Natl Acad Sci U S A ; 113(33): 9187-92, 2016 08 16.
Artigo em Inglês | MEDLINE | ID: mdl-27489348

RESUMO

Protein structure determination by proton-detected magic-angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of (1)H-(1)H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.


Assuntos
Espectroscopia de Ressonância Magnética/métodos , Proteínas/química , Dobramento de Proteína , Prótons
14.
Analyst ; 143(18): 4335-4346, 2018 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-30109873

RESUMO

The work presents the complementary approach to characterize the formation of various Hb species inside isolated human RBCs exposed to NO, with a focus on the formed Hb-NO adducts. This work presents a complementary approach based on Resonance Raman Spectroscopy (RRS) supported by Blood Gas Analysis, Electron Paramagnetic Resonance Spectroscopy, UV-Vis Absorption Spectroscopy and Mössbauer Spectroscopy to characterize the formation of various Hb species, with a focus on the Hb-NO adducts formed inside isolated human RBCs exposed to NO, under the experimental conditions of low and high levels of oxygen Hb saturation. In the present work, we induced Hb-NO adducts using PAPA-NONOate, a NO-donor with known chemistry and kinetics of NO release, and confirmed the formation of Hb-NO adducts in RBCs incubated with Human Aortic Endothelial Cells (HAECs) stimulated to produce NO. Our results provide a new insight into the formation of Hb-NO adducts after the exposure of RBCs with high oxyHb content to exogenous NO with special attention to the formation of LSHbIIINO in addition to LSHbIINO and metHb (HS/LSHbIIIH2O). We also point out that reliable characterization of Hb-NO adducts requires complementary techniques. Among them, RRS, as a label-free and non-destructive tool, appears to be an important discrimination technique in the studies of Hb-NO adducts inside intact RBCs.


Assuntos
Células Endoteliais/química , Eritrócitos/química , Hemoglobinas/química , Óxido Nítrico/química , Aorta/citologia , Células Cultivadas , Espectroscopia de Ressonância de Spin Eletrônica , Endotélio Vascular/citologia , Humanos , Cinética , Análise Espectral Raman
15.
J Biomol NMR ; 68(2): 129-138, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28243768

RESUMO

A method for five-dimensional spectral reconstruction of non-uniformly sampled NMR data sets is proposed. It is derived from the previously published signal separation algorithm, with major alterations to avoid unfeasible processing of an entire five-dimensional spectrum. The proposed method allows credible reconstruction of spectra from as little as a few hundred data points and enables sensitive resonance detection in experiments with a high dynamic range of peak intensities. The efficiency of the method is demonstrated on two high-resolution spectra for rapid sequential assignment of intrinsically disordered proteins, namely 5D HN(CA)CONH and 5D (HACA)CON(CO)CONH.


Assuntos
Algoritmos , Proteínas Intrinsicamente Desordenadas/química , Ressonância Magnética Nuclear Biomolecular/métodos , Isótopos de Carbono , Humanos , Isótopos de Nitrogênio , Razão Sinal-Ruído , alfa-Sinucleína/química
16.
Inorg Chem ; 56(7): 4021-4027, 2017 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-28322558

RESUMO

A building block approach has been used to prepare a new family of hexanuclear magnetic molecules Mn4Nb2, Fe4Nb2, and Co4Nb2 of general formula {[MII(tmphen)2]4[NbIV(CN)8]2}·solv (M = Mn, Fe, Co; tmphen = 3,4,7,8-tetramethyl-1,10-phenanthroline; solv = MeOH and/or H2O). Mn4Nb2 exhibits a magnetocaloric effect at temperatures close to 1.8 K, and Fe4Nb2 undergoes an incomplete gradual spin crossover and a photomagnetic response related to light-induced excited spin state trapping.

17.
Solid State Nucl Magn Reson ; 87: 126-136, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28802890

RESUMO

1H-detection in solid-state NMR of proteins has been traditionally combined with deuteration for both resolution and sensitivity reasons, with the optimal level of proton dilution being dependent on MAS rate. Here we present 1H-detected 15N and 13C CP-HSQC spectra on two microcrystalline samples acquired at 60 and 111 kHz MAS and at ultra-high field. We critically compare the benefits of three labeling schemes yielding different levels of proton content in terms of resolution, coherence lifetimes and feasibility of scalar-based 2D correlations under these experimental conditions. We observe unexpectedly high resolution and sensitivity of aromatic resonances in 2D 13C-1H correlation spectra of protonated samples. Ultrafast MAS reduces or even removes the necessity of 1H dilution for high-resolution 1H-detection in biomolecular solid-state NMR. It yields 15N,1H and 13C,1H fingerprint spectra of exceptional resolution for fully protonated samples, with notably superior 1H and 13C lineshapes for side-chain resonances.


Assuntos
Deutério/química , Ressonância Magnética Nuclear Biomolecular , Proteínas/química , Prótons
18.
Solid State Nucl Magn Reson ; 87: 117-125, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28732673

RESUMO

The recent breakthroughs in NMR probe technologies resulted in the development of MAS NMR probes with rotation frequencies exceeding 100 kHz. Herein, we explore dramatic increases in sensitivity and resolution observed at MAS frequencies of 110-111 kHz in a novel 0.7 mm HCND probe that enable structural analysis of fully protonated biological systems. Proton- detected 2D and 3D correlation spectroscopy under such conditions requires only 0.1-0.5 mg of sample and a fraction of time compared to conventional 13C-detected experiments. We discuss the performance of several proton- and heteronuclear- (13C-,15N-) based correlation experiments in terms of sensitivity and resolution, using a model microcrystalline fMLF tripeptide. We demonstrate the applications of ultrafast MAS to a large, fully protonated protein assembly of the 231-residue HIV-1 CA capsid protein. Resonance assignments of protons and heteronuclei, as well as 1H-15N dipolar and 1HN CSA tensors are readily obtained from the high sensitivity and resolution proton-detected 3D experiments. The approach demonstrated here is expected to enable the determination of atomic-resolution structures of large protein assemblies, inaccessible by current methodologies.


Assuntos
Ressonância Magnética Nuclear Biomolecular , Proteínas/química , Prótons , Proteínas do Capsídeo/química , HIV-1 , Oligopeptídeos/química
19.
J Am Chem Soc ; 138(5): 1635-46, 2016 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-26761594

RESUMO

Precisely controlled stoichiometric mixtures of Co(2+) and Fe(2+) metal ions were combined with the [W(V)(CN)8](3-) metalloligand in a methanolic solution to produce a series of trimetallic cyanido-bridged {Fe(9-x)Co(x)[W(CN)8]6(MeOH)24}·12MeOH (x = 0, 1, ..., 8, 9; compounds 0, 1, ..., 8, 9) clusters. All the compounds, 0-9, are isostructural, and consist of pentadecanuclear clusters of a six-capped body-centered cube topology, capped by methanol molecules which are coordinated to 3d metal centers. Thus, they can be considered as a unique type of a cluster-based molecular solid solution in which different Co/Fe metal ratios can be introduced while preserving the coordination skeleton and the overall molecular architecture. Depending on the Co/Fe ratio, 0-9 exhibit an unprecedented tuning of magnetic functionalities which relate to charge transfer assisted phase transition effects and slow magnetic relaxation effects. The iron rich 0-5 phases exhibit thermally induced reversible structural phase transitions in the 180-220 K range with the critical temperatures being linearly dependent on the value of x. The phase transition in 0 is accompanied by (HS)Fe(II) W(V) ↔ (HS)Fe(III) W(IV) charge transfer (CT) and the additional minor contribution of a Fe-based spin crossover (SCO) effect. The Co-containing 1-5 phases reveal two simultaneous electron transfer processes which explore (HS)Fe(II) W(V) ↔ (HS)Fe(III) W(IV) CT and the more complex (HS)Co(II) W(V) ↔ (LS)Co(III) W(IV) charge transfer induced spin transition (CTIST). Detailed structural, spectroscopic, and magnetic studies help explain the specific role of both types of CN(-)-bridged moieties: the Fe-NC-W linkages activate the molecular network toward a phase transition, while the subsequent Co-W CTIST enhances structural changes and enlarges thermal hysteresis of the magnetic susceptibility. On the second side of the 0-9 series, the vanishing phase transition in the cobalt rich 6-9 phases results in the high-spin ground state, and in the occurrence of a slow magnetic relaxation process at low temperatures. The energy barrier of the magnetic relaxation gradually increases with the increasing value of x, reaching up to ΔE/kB = 22.3(3) K for compound 9.

20.
J Biomol NMR ; 64(1): 27-37, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26614488

RESUMO

Nuclear magnetic resonance spectroscopy (NMR) can provide a great deal of information about structure and dynamics of biomolecules. The quality of an NMR structure strongly depends on the number of experimental observables and on their accurate conversion into geometric restraints. When distance restraints are derived from nuclear Overhauser effect spectroscopy (NOESY), stereo-specific assignments of prochiral atoms can contribute significantly to the accuracy of NMR structures of proteins and nucleic acids. Here we introduce a series of NOESY-based pulse sequences that can assist in the assignment of chiral CHD methylene protons in random fractionally deuterated proteins. Partial deuteration suppresses spin-diffusion between the two protons of CH2 groups that normally impedes the distinction of cross-relaxation networks for these two protons in NOESY spectra. Three and four-dimensional spectra allow one to distinguish cross-relaxation pathways involving either of the two methylene protons so that one can obtain stereospecific assignments. In addition, the analysis provides a large number of stereospecific distance restraints. Non-uniform sampling was used to ensure optimal signal resolution in 4D spectra and reduce ambiguities of the assignments. Automatic assignment procedures were modified for efficient and accurate stereospecific assignments during automated structure calculations based on 3D spectra. The protocol was applied to calcium-loaded calbindin D9k. A large number of stereospecific assignments lead to a significant improvement of the accuracy of the structure.


Assuntos
Ressonância Magnética Nuclear Biomolecular/métodos , Proteínas/química , Modelos Moleculares , Conformação Molecular , Proteína G de Ligação ao Cálcio S100/química
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