Detalhe da pesquisa
1.
Accurate and fast graph-based pangenome annotation and clustering with ggCaller.
Genome Res
; 33(9): 1622-1637, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37620118
2.
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe.
Genome Res
; 33(1): 129-140, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36669850
3.
Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents.
PLoS Genet
; 17(2): e1009269, 2021 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33630855
4.
An accurate method for identifying recent recombinants from unaligned sequences.
Bioinformatics
; 38(7): 1823-1829, 2022 03 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-35025988
5.
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Bioinformatics
; 38(5): 1450-1451, 2022 02 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34864895
6.
Identifying Targets of Protective Antibodies against Severe Malaria in Papua, Indonesia, Using Locally Expressed Domains of Plasmodium falciparum Erythrocyte Membrane Protein 1.
Infect Immun
; 90(2): e0043521, 2022 02 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-34871039
7.
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Genome Res
; 29(2): 304-316, 2019 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-30679308
8.
The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding var genes.
PLoS Biol
; 16(3): e2004328, 2018 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-29529020
9.
Fast hierarchical Bayesian analysis of population structure.
Nucleic Acids Res
; 47(11): 5539-5549, 2019 06 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-31076776
10.
Genome-wide epistasis and co-selection study using mutual information.
Nucleic Acids Res
; 47(18): e112, 2019 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31361894
11.
Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange.
Nat Commun
; 15(1): 3477, 2024 Apr 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-38658529
12.
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis.
Nat Commun
; 15(1): 2286, 2024 Mar 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-38480728
13.
Challenges in prokaryote pangenomics.
Microb Genom
; 9(5)2023 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37227251
14.
Mutational spectra are associated with bacterial niche.
Nat Commun
; 14(1): 7091, 2023 11 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-37925514
15.
Measuring changes in Plasmodium falciparum census population size in response to sequential malaria control interventions.
medRxiv
; 2023 Aug 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37292908
16.
Mge-cluster: a reference-free approach for typing bacterial plasmids.
NAR Genom Bioinform
; 5(3): lqad066, 2023 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-37435357
17.
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation.
Philos Trans R Soc Lond B Biol Sci
; 377(1861): 20210237, 2022 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35989601
18.
Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae.
NAR Genom Bioinform
; 4(1): lqac011, 2022 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-35211669
19.
Pneumococcal within-host diversity during colonization, transmission and treatment.
Nat Microbiol
; 7(11): 1791-1804, 2022 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36216891
20.
Age-specific patterns of DBLα var diversity can explain why residents of high malaria transmission areas remain susceptible to Plasmodium falciparum blood stage infection throughout life.
Int J Parasitol
; 52(11): 721-731, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35093396