Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 37
Filtrar
1.
Microbiology (Reading) ; 168(8)2022 08.
Artigo em Inglês | MEDLINE | ID: mdl-35917166

RESUMO

Pectobacterium atrosepticum is part of a larger family of soft rot bacteria (Pectobacteriaceae) that cause disease on a wide range of crops worldwide. They are closely related to members of the Enterobacteriaceae and, as the plant pathogens and plant associated members of the group, form part of a continuum towards opportunistic and more devastating animal and human pathogens. Many of the horizontally acquired islands present in the genome of P. atrosepticum are directly responsible for life on plants. These include genes for a plethora of plant cell wall degrading enzymes, plant toxins, siderophores etc., which are exported by multiple secretion systems under a highly coordinated regulation system.


Assuntos
Pectobacterium , Solanum tuberosum , Enterobacteriaceae , Humanos , Pectobacterium/genética , Doenças das Plantas/microbiologia , Plantas , Solanum tuberosum/microbiologia
2.
J Biol Chem ; 289(49): 34349-65, 2014 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-25320086

RESUMO

Outbreaks of verotoxigenic Escherichia coli are often associated with fresh produce. However, the molecular basis to adherence is unknown beyond ionic lipid-flagellum interactions in plant cell membranes. We demonstrate that arabinans present in different constituents of plant cell walls are targeted for adherence by E. coli common pilus (ECP; or meningitis-associated and temperature-regulated (Mat) fimbriae) for E. coli serotypes O157:H7 and O18:K1:H7. l-Arabinose is a common constituent of plant cell wall that is rarely found in other organisms, whereas ECP is widespread in E. coli and other environmental enteric species. ECP bound to oligosaccharides of at least arabinotriose or longer in a glycan array, plant cell wall pectic polysaccharides, and plant glycoproteins. Recognition overlapped with the antibody LM13, which binds arabinanase-sensitive pectic epitopes, and showed a preferential affinity for (1→5)-α-linked l-arabinosyl residues and longer chains of arabinan as demonstrated with the use of arabinan-degrading enzymes. Functional adherence in planta was mediated by the adhesin EcpD in combination with the structural subunit, EcpA, and expression was demonstrated with an ecpR-GFP fusion and ECP antibodies. Spinach was found to be enriched for ECP/LM13 targets compared with lettuce. Specific recognition of arabinosyl residues may help explain the persistence of E. coli in the wider environment and association of verotoxigenic E. coli with some fresh produce plants by exploitation of a glycan found only in plant, not animal, cells.


Assuntos
Adesinas Bacterianas/genética , Arabinose/química , Parede Celular/química , Escherichia coli O157/genética , Fímbrias Bacterianas/genética , Regulação Bacteriana da Expressão Gênica , Polissacarídeos/química , Adesinas Bacterianas/química , Adesinas Bacterianas/metabolismo , Anticorpos Monoclonais/química , Especificidade de Anticorpos , Arabinose/metabolismo , Aderência Bacteriana , Parede Celular/metabolismo , Parede Celular/microbiologia , Escherichia coli O157/química , Escherichia coli O157/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Proteínas de Fímbrias/química , Proteínas de Fímbrias/genética , Proteínas de Fímbrias/metabolismo , Fímbrias Bacterianas/química , Fímbrias Bacterianas/metabolismo , Interações Hospedeiro-Patógeno , Chaperonas Moleculares/química , Chaperonas Moleculares/genética , Chaperonas Moleculares/metabolismo , Células Vegetais/química , Células Vegetais/metabolismo , Células Vegetais/microbiologia , Polissacarídeos/metabolismo , Ligação Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Spinacia oleracea/química , Spinacia oleracea/metabolismo , Spinacia oleracea/microbiologia
3.
Mol Plant Microbe Interact ; 28(4): 420-31, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25411959

RESUMO

Type VI secretion systems (T6SSs) are a class of macromolecular machines that are recognized as an important virulence mechanism in several gram-negative bacteria. The genome of Pantoea ananatis LMG 2665(T), a pathogen of pineapple fruit and onion plants, carries two gene clusters whose predicted products have homology with T6SS-associated gene products from other bacteria. Nothing is known regarding the role of these T6SS-1 and T6SS-3 gene clusters in the biology of P. ananatis. Here, we present evidence that T6SS-1 plays an important role in the pathogenicity of P. ananatis LMG 2665(T) in onion plants, while a strain lacking T6SS-3 remains as pathogenic as the wild-type strain. We also investigated the role of the T6SS-1 system in bacterial competition, the results of which indicated that several bacteria compete less efficiently against wild-type LMG 2665(T) than a strain lacking T6SS-1. Additionally, we demonstrated that these phenotypes of strain LMG 2665(T) were reliant on the core T6SS products TssA and TssD (Hcp), thus indicating that the T6SS-1 gene cluster encodes a functioning T6SS. Collectively, our data provide the first evidence demonstrating that the T6SS-1 system is a virulence determinant of P. ananatis LMG 2665(T) and plays a role in bacterial competition.


Assuntos
Sistemas de Secreção Bacterianos/genética , Interações Hospedeiro-Patógeno/genética , Pantoea/genética , Pantoea/patogenicidade , Doenças das Plantas/microbiologia , Virulência/genética , Sistemas de Secreção Bacterianos/fisiologia , Técnicas de Inativação de Genes , Genes Bacterianos , Interações Hospedeiro-Patógeno/fisiologia , Família Multigênica , Mutação , Cebolas/microbiologia , Pantoea/fisiologia , Virulência/fisiologia
4.
Environ Microbiol ; 17(11): 4730-44, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26271942

RESUMO

Integrative and conjugative elements (ICEs) contribute to the rapid evolution of bacterial pathogens via horizontal gene transfer of virulence determinants. ICEs have common mechanisms for transmission, yet the cues triggering this process under natural environmental or physiological conditions are largely unknown. In this study, mobilization of the putative ICE horizontally acquired island 2 (HAI2), present in the chromosome of the phytopathogen Pectobacterium atrosepticum SCRI1043, was examined during infection of the host plant potato. Under these conditions, mobilization of HAI2 increased markedly compared with in vitro cultures. In planta-induced mobilization of HAI2 was regulated by quorum sensing and involved the putative ICE-encoded relaxase ECA0613. Disruption of ECA0613 also reduced transcription of genes involved in production of coronafacic acid (Cfa), the major virulence factor harboured on HAI2, whereas their expression was unaffected in the quorum-sensing (expI) mutant. Thus, suppression of cfa gene expression was not regulated by the mobilization of the ICE per se, but was due directly to inactivation of the relaxase. The identification of genetic factors associated solely with in planta mobilization of an ICE demonstrates that this process is highly adapted to the natural environment of the bacterial host and can influence the expression of virulence determinants.


Assuntos
Pectobacterium/genética , Pectobacterium/patogenicidade , Doenças das Plantas/microbiologia , Solanum tuberosum/microbiologia , Fatores de Virulência/genética , Sequência de Aminoácidos , Transferência Genética Horizontal , Indenos/metabolismo , Ilhas , Dados de Sequência Molecular , Pectobacterium/metabolismo , Percepção de Quorum/genética , Alinhamento de Sequência , Fatores de Virulência/metabolismo
5.
BMC Genomics ; 15: 404, 2014 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-24884520

RESUMO

BACKGROUND: Pantoea ananatis is found in a wide range of natural environments, including water, soil, as part of the epi- and endophytic flora of various plant hosts, and in the insect gut. Some strains have proven effective as biological control agents and plant-growth promoters, while other strains have been implicated in diseases of a broad range of plant hosts and humans. By analysing the pan-genome of eight sequenced P. ananatis strains isolated from different sources we identified factors potentially underlying its ability to colonize and interact with hosts in both the plant and animal Kingdoms. RESULTS: The pan-genome of the eight compared P. ananatis strains consisted of a core genome comprised of 3,876 protein coding sequences (CDSs) and a sizeable accessory genome consisting of 1,690 CDSs. We estimate that ~106 unique CDSs would be added to the pan-genome with each additional P. ananatis genome sequenced in the future. The accessory fraction is derived mainly from integrated prophages and codes mostly for proteins of unknown function. Comparison of the translated CDSs on the P. ananatis pan-genome with the proteins encoded on all sequenced bacterial genomes currently available revealed that P. ananatis carries a number of CDSs with orthologs restricted to bacteria associated with distinct hosts, namely plant-, animal- and insect-associated bacteria. These CDSs encode proteins with putative roles in transport and metabolism of carbohydrate and amino acid substrates, adherence to host tissues, protection against plant and animal defense mechanisms and the biosynthesis of potential pathogenicity determinants including insecticidal peptides, phytotoxins and type VI secretion system effectors. CONCLUSIONS: P. ananatis has an 'open' pan-genome typical of bacterial species that colonize several different environments. The pan-genome incorporates a large number of genes encoding proteins that may enable P. ananatis to colonize, persist in and potentially cause disease symptoms in a wide range of plant and animal hosts.


Assuntos
Infecções por Enterobacteriaceae/veterinária , Genoma Bacteriano , Pantoea/genética , Pantoea/fisiologia , Doenças das Plantas/microbiologia , Animais , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Infecções por Enterobacteriaceae/microbiologia , Interação Gene-Ambiente , Humanos , Insetos/microbiologia , Pantoea/classificação , Filogenia , Plantas/microbiologia , Vertebrados/microbiologia
6.
Environ Microbiol ; 16(7): 2181-95, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24148193

RESUMO

Bacterial attachment to plant and animal surfaces is generally thought to constitute the initial step in colonization, requiring adherence factors such as flagella and fimbriae. We describe the molecular mechanism underpinning flagella-mediated adherence to plant tissue for the foodborne pathogen, enterohaemorrhagic Escherichia coli. Escherichia coli H7 flagella interacted with a sulphated carbohydrate (carrageenan) on a glycan array, which occurred in a dose-dependent manner. Adherence of E. coli O157 : H-expressing flagella of serotype H7, H6 or H48 to plants associated with outbreaks from fresh produce and to Arabidopsis thaliana, was dependent on flagella interactions with phospholipids and sulpholipids in plasma membranes. Adherence of purified H7 and H48 flagella to carrageenan was reduced at higher concentrations of KH2 PO4 or KCl, showing an ionic basis to the interactions. Purified H7 flagella were observed to physically interact with plasma membranes in spinach plants and in A.thaliana. The results show a specific interaction between E. coli H7, H6 and H48 flagella and ionic lipids in plant plasma membranes. The work extends our understanding of the molecular mechanisms underpinning E.coli flagella targeting of plant hosts and suggests a generic mechanism of recognition common in eukaryotic hosts belonging to different biological kingdoms.


Assuntos
Arabidopsis/microbiologia , Membrana Celular/microbiologia , Escherichia coli O157/metabolismo , Flagelos/metabolismo , Lipídeos de Membrana/metabolismo , Spinacia oleracea/microbiologia , Arabidopsis/química , Aderência Bacteriana , Carragenina/metabolismo , Membrana Celular/química , Contagem de Colônia Microbiana , Escherichia coli O157/química , Flagelos/química , Especificidade de Hospedeiro , Interações Hospedeiro-Patógeno , Lipídeos de Membrana/química , Concentração Osmolar , Spinacia oleracea/química
7.
Int J Syst Evol Microbiol ; 64(Pt 3): 768-774, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24225027

RESUMO

Pectinolytic bacteria have been recently isolated from diseased potato plants exhibiting blackleg and slow wilt symptoms found in a number of European countries and Israel. These Gram-reaction-negative, motile, rods were identified as belonging to the genus Dickeya, previously the Pectobacterium chrysanthemi complex (Erwinia chrysanthemi), on the basis of production of a PCR product with the pelADE primers, 16S rRNA gene sequence analysis, fatty acid methyl esterase analysis, the production of phosphatases and the ability to produce indole and acids from α-methylglucoside. Differential physiological assays used previously to differentiate between strains of E. chrysanthemi, showed that these isolates belonged to biovar 3. Eight of the isolates, seven from potato and one from hyacinth, were analysed together with 21 reference strains representing all currently recognized taxa within the genus Dickeya. The novel isolates formed a distinct genetic clade in multilocus sequence analysis (MLSA) using concatenated sequences of the intergenic spacer (IGS), as well as dnaX, recA, dnaN, fusA, gapA, purA, rplB, rpoS and gyrA. Characterization by whole-cell MALDI-TOF mass spectrometry, pulsed field gel electrophoresis after digestion of whole-genome DNA with rare-cutting restriction enzymes, average nucleotide identity analysis and DNA-DNA hybridization studies, showed that although related to Dickeya dadantii, these isolates represent a novel species within the genus Dickeya, for which the name Dickeya solani sp. nov. (type strain IPO 2222(T) = LMG25993(T) = NCPPB4479(T)) is proposed.


Assuntos
Enterobacteriaceae/classificação , Pectinas/metabolismo , Filogenia , Solanum tuberosum/microbiologia , Técnicas de Tipagem Bacteriana , DNA Bacteriano/genética , Enterobacteriaceae/genética , Enterobacteriaceae/isolamento & purificação , Europa (Continente) , Ácidos Graxos/química , Genes Bacterianos , Indóis/metabolismo , Israel , Dados de Sequência Molecular , Tipagem de Sequências Multilocus , Hibridização de Ácido Nucleico , Doenças das Plantas/microbiologia , RNA Ribossômico 16S/genética , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
8.
Mol Plant Microbe Interact ; 26(3): 356-66, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23113713

RESUMO

Plant cell wall-degrading enzymes (PCWDE) are key virulence determinants in the pathogenesis of the potato pathogen Pectobacterium atrosepticum. In this study, we report the impact on virulence of a transposon insertion mutation in the metJ gene that codes for the repressor of the methionine biosynthesis regulon. In a mutant strain defective for the small regulatory RNA rsmB, PCWDE are not produced and virulence in potato tubers is almost totally abolished. However, when the metJ gene is disrupted in this background, the rsmB(-) phenotype is suppressed and virulence and PCWDE production are restored. Additionally, when metJ is disrupted, production of the quorum-sensing signal, N-(3-oxohexanoyl)-homoserine lactone, is increased. The metJ mutant strains showed pleiotropic transcriptional impacts affecting approximately a quarter of the genome. Genes involved in methionine biosynthesis were most highly upregulated but many virulence-associated transcripts were also upregulated. This is the first report of the impact of the MetJ repressor on virulence in bacteria.


Assuntos
Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica/genética , Pectobacterium/genética , Percepção de Quorum/genética , Proteínas Repressoras/genética , Solanum tuberosum/microbiologia , 4-Butirolactona/análogos & derivados , 4-Butirolactona/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/metabolismo , Parede Celular/metabolismo , Perfilação da Expressão Gênica , Metionina/metabolismo , Dados de Sequência Molecular , Mutagênese Insercional , Motivos de Nucleotídeos , Análise de Sequência com Séries de Oligonucleotídeos , Pectobacterium/enzimologia , Pectobacterium/patogenicidade , Pectobacterium/fisiologia , Peptídeo Hidrolases/metabolismo , Fenótipo , Tubérculos/microbiologia , Polissacarídeo-Liases/metabolismo , Proteínas Repressoras/metabolismo , Alinhamento de Sequência , Transdução de Sinais , Virulência
9.
Mol Microbiol ; 84(4): 648-63, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22524709

RESUMO

Topoisomerase III enzymes are present only in a limited set of bacteria and their physiological role remains unclear. Here, we show that PbTopo IIIß, a homologue of topoisomerase III encoded on the chromosome of Pectobacterium atrosepticum strain SCRI1043 (Pba SCRI1043), is involved in excision of HAI2, a discrete ~100 kb region, from the Pba SCRI1043 chromosome. HAI2 is a Pathogenicity Island (PAI) that encodes coronafacic acid (Cfa), a major virulence determinant required for infection of potato. PAIs are horizontally acquired genetic elements that in some instances are able to excise from the chromosome of their host cell to form a circular episome prior to transfer to a recipient bacterium. We demonstrate excision of HAI2 from the chromosome, a process that is independent of growth phase and that results in the production of a circular intermediate. Inactivation of PbTopo IIIß causes a 10(3) - to 10(4) -fold increase in excision, leading to reduced fitness in vitro and a decrease in the virulence of Pba SCRI1043 on potato. These results suggest that PbTopo IIIß is required for stable maintenance of HAI2 in the chromosome of Pba SCRI1043 and may control as yet unidentified genes involved in viability and virulence of Pba SCRI1043 on potato.


Assuntos
DNA Topoisomerases Tipo I/metabolismo , DNA Bacteriano/genética , Ilhas Genômicas , Pectobacterium/enzimologia , Pectobacterium/patogenicidade , Recombinação Genética , DNA Topoisomerases Tipo I/genética , DNA Bacteriano/metabolismo , Pectobacterium/genética , Doenças das Plantas/microbiologia , Solanum tuberosum/microbiologia , Virulência
10.
Nature ; 450(7166): 115-8, 2007 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-17914356

RESUMO

Bacterial, oomycete and fungal plant pathogens establish disease by translocation of effector proteins into host cells, where they may directly manipulate host innate immunity. In bacteria, translocation is through the type III secretion system, but analogous processes for effector delivery are uncharacterized in fungi and oomycetes. Here we report functional analyses of two motifs, RXLR and EER, present in translocated oomycete effectors. We use the Phytophthora infestans RXLR-EER-containing protein Avr3a as a reporter for translocation because it triggers RXLR-EER-independent hypersensitive cell death following recognition within plant cells that contain the R3a resistance protein. We show that Avr3a, with or without RXLR-EER motifs, is secreted from P. infestans biotrophic structures called haustoria, demonstrating that these motifs are not required for targeting to haustoria or for secretion. However, following replacement of Avr3a RXLR-EER motifs with alanine residues, singly or in combination, or with residues KMIK-DDK--representing a change that conserves physicochemical properties of the protein--P. infestans fails to deliver Avr3a or an Avr3a-GUS fusion protein into plant cells, demonstrating that these motifs are required for translocation. We show that RXLR-EER-encoding genes are transcriptionally upregulated during infection. Bioinformatic analysis identifies 425 potential genes encoding secreted RXLR-EER class proteins in the P. infestans genome. Identification of this class of proteins provides unparalleled opportunities to determine how oomycetes manipulate hosts to establish infection.


Assuntos
Proteínas de Algas/química , Proteínas de Algas/metabolismo , Nicotiana/metabolismo , Phytophthora/metabolismo , Sinais Direcionadores de Proteínas , Solanum tuberosum/metabolismo , Alanina/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Biologia Computacional , Pectobacterium/genética , Phytophthora/química , Transporte Proteico , Pseudomonas syringae/genética , Solanum tuberosum/microbiologia , Nicotiana/microbiologia
11.
Phytopathology ; 103(4): 333-40, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23506361

RESUMO

The foodborne pathogen Escherichia coli O157:H7 is increasingly associated with fresh produce (fruit and vegetables). Bacterial colonization of fresh produce plants can occur to high levels on the external tissue but bacteria have also been detected within plant tissue. However, questions remain about the extent of internalization, its molecular basis, and internal location of the bacteria. We have determined the extent of internalization of E. coli O157:H7 in live spinach and lettuce plants and used high-resolution microscopy to examine colony formation in roots and pathways to internalization. E. coli O157:H7 was found within internal tissue of both produce species. Colonization occurred within the apoplast between plant cells. Furthermore, colonies were detected inside the cell wall of epidermal and cortical cells of spinach and Nicotiana benthamiana roots. Internal colonization of epidermal cells resembled that of the phytopathogen Pectobacterium atrosepticum on potato. In contrast, only sporadic cells of the laboratory strain of E. coli K-12 were found on spinach, with no internal bacteria evident. The data extend previous findings that internal colonization of plants appears to be limited to a specific group of plant-interacting bacteria, including E. coli O157:H7, and demonstrates its ability to invade the cells of living plants.


Assuntos
Escherichia coli O157/fisiologia , Escherichia coli/fisiologia , Lactuca/microbiologia , Raízes de Plantas/microbiologia , Spinacia oleracea/microbiologia , Verduras/microbiologia , Contagem de Colônia Microbiana , Endófitos , Escherichia coli/citologia , Escherichia coli/crescimento & desenvolvimento , Escherichia coli O157/citologia , Escherichia coli O157/crescimento & desenvolvimento , Contaminação de Alimentos , Microbiologia de Alimentos , Interações Hospedeiro-Patógeno , Humanos , Lactuca/citologia , Microscopia Eletrônica de Transmissão , Pectobacterium/citologia , Pectobacterium/crescimento & desenvolvimento , Pectobacterium/fisiologia , Doenças das Plantas/microbiologia , Folhas de Planta/microbiologia , Plantas Geneticamente Modificadas , Rizosfera , Microbiologia do Solo , Solanum tuberosum/citologia , Solanum tuberosum/microbiologia , Spinacia oleracea/citologia , Nicotiana/citologia , Nicotiana/microbiologia
12.
Mol Microbiol ; 82(3): 719-33, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21992096

RESUMO

Cyclic diguanylate (c-di-GMP) is a second messenger controlling many important bacterial processes. The phytopathogen Pectobacterium atrosepticum SCRI1043 (Pba1043) possesses a Type I secretion system (T1SS) essential for the secretion of a proteinaceous multi-repeat adhesin (MRP) required for binding to the host plant. The genes encoding the MRP and the T1SS are tightly linked to genes encoding several putative c-di-GMP regulatory components. We show that c-di-GMP regulates secreted MRP levels in Pba1043 through the action of two genes encoding predicted diguanylate cyclase (DGC) and phosphodiesterase proteins (ECA3270 and ECA3271). Phenotypic analyses and quantification of c-di-GMP levels demonstrated that ECA3270 and ECA3271 regulate secreted MRP levels by increasing and decreasing, respectively, the intracellular levels of c-di-GMP. Moreover, ECA3270 represents the first active DGC reported to have an alternative active-site motif from the 'canonical' GG[D/E]EF. ECA3270 has an A-site motif of SGDEF and analysis of single amino acid replacements demonstrated that the first position of this motif can tolerate functional substitution. Serine in position one of the A-site is also observed in many other DGCs. Finally, another T1SS-linked regulator (ECA3265) also plays an important role in regulating secreted MRP, with an altered localization of MRP observed in an ECA3265 mutant background. Mutants defective in these three T1SS-linked regulators exhibit a reduction in root binding and virulence, confirming that this complex, finely tuned regulation system is crucial in the interaction with host plants.


Assuntos
Adesinas Bacterianas/metabolismo , Proteínas de Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica , Pectobacterium/metabolismo , Diester Fosfórico Hidrolases/metabolismo , Fósforo-Oxigênio Liases/metabolismo , Motivos de Aminoácidos , Substituição de Aminoácidos , GMP Cíclico/análogos & derivados , GMP Cíclico/metabolismo , Proteínas de Escherichia coli/genética , Deleção de Genes , Proteínas de Membrana Transportadoras/genética , Proteínas de Membrana Transportadoras/metabolismo , Mutagênese Sítio-Dirigida , Proteínas Mutantes/genética , Proteínas Mutantes/metabolismo , Pectobacterium/patogenicidade , Diester Fosfórico Hidrolases/genética , Fósforo-Oxigênio Liases/genética , Raízes de Plantas/microbiologia , Solanum tuberosum/microbiologia , Virulência
13.
Adv Appl Microbiol ; 81: 89-132, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22958528

RESUMO

Most reviews of climate change are epidemiological, focusing on impact assessment and risk mapping. However, there are many reports of the effects of environmental stress factors on defense mechanisms in plants against pathogens. We review those representative of key climate change-related stresses to determine whether there are any patterns or trends in adaptation responses. We recognize the complexity of climate change itself and the multitrophic nature of the complex biological interactions of plants, microbes, soil, and the environment and, therefore, the difficulty of reductionist dissection approaches to resolving the problems. We review host defense genes, germplasm, and environmental interactions in different types of organisms but find no significant group-specific trends. Similarly, we review by host defense mechanism type and by host-pathogen trophic relationship but identify no dominating mechanism for stress response. However, we do identify core stress response mechanisms playing key roles in multiple response pathways whether to biotic or abiotic stress. We suggest that these should be central to mechanistic climate change plant defense research. We also recognize biodiversity, heterogeneity, and the need for understanding stress in a true systems biology approach as being essential components of progressing our understanding of and response to climate change.


Assuntos
Mudança Climática , Plantas , Biodiversidade , Clima , Ecossistema , Plantas/metabolismo , Solo
14.
J Bacteriol ; 192(11): 2936-7, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20348253

RESUMO

Pantoea ananatis is a Gram-negative plant pathogen that causes disease on a broad range of host plants, including pineapple, maize, rice, onion, melons, and Eucalyptus, and has been implicated in several cases of human disease. Here, we report the genome sequence of P. ananatis LMG20103 isolated from diseased Eucalyptus in South Africa.


Assuntos
Eucalyptus/microbiologia , Genoma Bacteriano/genética , Pantoea/genética , Doenças das Plantas/microbiologia , Dados de Sequência Molecular
15.
PLoS Pathog ; 4(6): e1000093, 2008 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-18566662

RESUMO

Quorum sensing (QS) in vitro controls production of plant cell wall degrading enzymes (PCWDEs) and other virulence factors in the soft rotting enterobacterial plant pathogen Pectobacterium atrosepticum (Pba). Here, we demonstrate the genome-wide regulatory role of QS in vivo during the Pba-potato interaction, using a Pba-specific microarray. We show that 26% of the Pba genome exhibited differential transcription in a QS (expI-) mutant, compared to the wild-type, suggesting that QS may make a greater contribution to pathogenesis than previously thought. We identify novel components of the QS regulon, including the Type I and II secretion systems, which are involved in the secretion of PCWDEs; a novel Type VI secretion system (T6SS) and its predicted substrates Hcp and VgrG; more than 70 known or putative regulators, some of which have been demonstrated to control pathogenesis and, remarkably, the Type III secretion system and associated effector proteins, and coronafacoyl-amide conjugates, both of which play roles in the manipulation of plant defences. We show that the T6SS and a novel potential regulator, VirS, are required for full virulence in Pba, and propose a model placing QS at the apex of a regulatory hierarchy controlling the later stages of disease progression in Pba. Our findings indicate that QS is a master regulator of phytopathogenesis, controlling multiple other regulators that, in turn, co-ordinately regulate genes associated with manipulation of host defences in concert with the destructive arsenal of PCWDEs that manifest the soft rot disease phenotype.


Assuntos
Genoma Bacteriano , Pectobacterium/patogenicidade , Doenças das Plantas/microbiologia , Percepção de Quorum/genética , Perfilação da Expressão Gênica , Genômica/métodos , Análise de Sequência com Séries de Oligonucleotídeos , Pectobacterium/genética , Solanum tuberosum/microbiologia , Virulência/genética
16.
PLoS Comput Biol ; 5(8): e1000473, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19696881

RESUMO

Microarray comparative genomic hybridisation (aCGH) provides an estimate of the relative abundance of genomic DNA (gDNA) taken from comparator and reference organisms by hybridisation to a microarray containing probes that represent sequences from the reference organism. The experimental method is used in a number of biological applications, including the detection of human chromosomal aberrations, and in comparative genomic analysis of bacterial strains, but optimisation of the analysis is desirable in each problem domain.We present a method for analysis of bacterial aCGH data that encodes spatial information from the reference genome in a hidden Markov model. This technique is the first such method to be validated in comparisons of sequenced bacteria that diverge at the strain and at the genus level: Pectobacterium atrosepticum SCRI1043 (Pba1043) and Dickeya dadantii 3937 (Dda3937); and Lactococcus lactis subsp. lactis IL1403 and L. lactis subsp. cremoris MG1363. In all cases our method is found to outperform common and widely used aCGH analysis methods that do not incorporate spatial information. This analysis is applied to comparisons between commercially important plant pathogenic soft-rotting enterobacteria (SRE) Pba1043, P. atrosepticum SCRI1039, P. carotovorum 193, and Dda3937.Our analysis indicates that it should not be assumed that hybridisation strength is a reliable proxy for sequence identity in aCGH experiments, and robustly extends the applicability of aCGH to bacterial comparisons at the genus level. Our results in the SRE further provide evidence for a dynamic, plastic 'accessory' genome, revealing major genomic islands encoding gene products that provide insight into, and may play a direct role in determining, variation amongst the SRE in terms of their environmental survival, host range and aetiology, such as phytotoxin synthesis, multidrug resistance, and nitrogen fixation.


Assuntos
Hibridização Genômica Comparativa/métodos , Enterobacteriaceae/genética , Genoma Bacteriano , Análise de Sequência com Séries de Oligonucleotídeos/métodos , Doenças das Plantas/microbiologia , Análise por Conglomerados , Simulação por Computador , Transferência Genética Horizontal , Variação Genética , Ilhas Genômicas , Cadeias de Markov , Modelos Estatísticos , Distribuição Normal , Reprodutibilidade dos Testes
17.
Sci Rep ; 10(1): 7747, 2020 05 08.
Artigo em Inglês | MEDLINE | ID: mdl-32385404

RESUMO

Expansins are encoded by some phytopathogenic bacteria and evidence indicates that they act as virulence factors for host infection. Here we analysed the expression of exl1 by Pectobacterium brasiliense and Pectobacterium atrosepticum. In both, exl1 gene appears to be under quorum sensing control, and protein Exl1 can be observed in culture medium and during plant infection. Expression of exl1 correlates with pathogen virulence, where symptoms are reduced in a Δexl1 mutant strain of P. atrosepticum. As well as Δexl1 exhibiting less maceration of potato plants, fewer bacteria are observed at distance from the inoculation site. However, bacteria infiltrated into the plant tissue are as virulent as the wild type, suggesting that this is due to alterations in the initial invasion of the tissue. Additionally, swarming from colonies grown on MacConkey soft agar was delayed in the mutant in comparison to the wild type. We found that Exl1 acts on the plant tissue, probably by remodelling of a cell wall component or altering the barrier properties of the cell wall inducing a plant defence response, which results in the production of ROS and the induction of marker genes of the JA, ET and SA signalling pathways in Arabidopsis thaliana. Exl1 inactive mutants fail to trigger such responses. This defence response is protective against Pectobacterium brasiliense and Botrytis cinerea in more than one plant species.


Assuntos
Arabidopsis/citologia , Pectobacterium/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Transdução de Sinais , Fatores de Virulência/metabolismo , Arabidopsis/imunologia , Arabidopsis/microbiologia , Ciclopentanos/metabolismo , Etilenos/metabolismo , Regulação Bacteriana da Expressão Gênica , Interações Hospedeiro-Patógeno , Oxilipinas/metabolismo , Pectobacterium/citologia , Pectobacterium/genética , Pectobacterium/fisiologia , Percepção de Quorum , Ácido Salicílico/metabolismo , Virulência , Fatores de Virulência/genética
18.
Sci Rep ; 9(1): 4525, 2019 03 14.
Artigo em Inglês | MEDLINE | ID: mdl-30872786

RESUMO

Plant cell wall degrading enzymes (PCWDEs) are the primary virulence determinants of soft rotting bacteria such as the potato pathogen, Pectobacterium atrosepticum. The regulation of secondary metabolite (Rsm) system controls production of PCWDEs in response to changing nutrient conditions. This work identified a new suppressor of an rsmB mutation - ECA1172 or rsmS (rsmB suppressor). Mutants defective in rsmB (encoding a small regulatory RNA), show reduced elaboration of the quorum sensing molecule (N-3-oxohexanoyl-homoserine lactone; OHHL) and PCWDEs. However, OHHL and PCWDE production were partially restored in an rsmB, rsmS double mutant. Single rsmS mutants, overproduced PCWDEs and OHHL relative to wild type P. atrosepticum and exhibited hypervirulence in potato. RsmS overproduction also resulted in increased PCWDEs and OHHL. Homology searches revealed rsmS conservation across pathogens such as Escherichia coli (ybaM), Dickeya solani, Klebsiella pneumoniae and Shigella flexneri. An rsmS mutant of Pectobacterium carotovorum ATCC39048 showed bypass of rsmB-dependent repression of PCWDEs and OHHL production. P. carotovorum ATCC39048 produces the ß-lactam antibiotic, 1-carbapen-2-em-3-carboxylic acid (a carbapenem). Production of the antibiotic was repressed in an rsmB mutant but partially restored in an rsmB, rsmS double mutant. This work highlights the importance of RsmS, as a conserved pleiotropic regulator of virulence and antibiotic biosynthesis.


Assuntos
Proteínas de Bactérias/metabolismo , Pectobacterium/patogenicidade , Virulência/genética , 4-Butirolactona/análogos & derivados , 4-Butirolactona/metabolismo , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Carbapenêmicos/metabolismo , Regulação Bacteriana da Expressão Gênica , Mutação , Peptídeo Hidrolases/genética , Peptídeo Hidrolases/metabolismo , Alinhamento de Sequência , Solanum tuberosum/microbiologia
19.
Annu Rev Phytopathol ; 44: 305-36, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16704357

RESUMO

The bacterial family Enterobacteriaceae contains some of the most devastating human and animal pathogens, including Escherichia coli, Salmonella enterica and species of Yersinia and Shigella. These are among the best-studied of any organisms, yet there is much to be learned about the nature and evolution of interactions with their hosts and with the wider environment. Comparative and functional genomics have fundamentally improved our understanding of their modes of adaptation to different ecological niches and the genes that determine their pathogenicity. In addition to animal pathogens, Enterobacteriaceae include important plant pathogens, such as Erwinia carotovora subsp. atroseptica (Eca), the first plant-pathogenic enterobacterium to be sequenced. This review focuses on genomic comparisons between Eca and other enterobacteria, with particular emphasis on the differences that exemplify or explain the plant-associated lifestyle(s) of Eca. Horizontal gene transfer in Eca may directly have led to the acquisition of a number of determinants that mediate its interactions, pathogenic or otherwise, with plants, offering a glimpse into its evolutionary divergence from animal-pathogenic enterobacteria.


Assuntos
Enterobacteriaceae/genética , Genômica/métodos , Doenças das Plantas/microbiologia , Genoma Bacteriano
20.
PLoS One ; 13(10): e0205711, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30312341

RESUMO

Potato blackleg and soft rot caused by Pectobacterium and Dickeya species are among the most significant bacterial diseases affecting potato production globally. In this study we estimate the impact of future temperatures on establishment of non-indigenous but confirmed Pectobacterium and Dickeya species in Great Britain (GB). The calculations are based on probabilistic climate change data and a model fitted to disease severity data from a controlled environment tuber assay with the dominant potato blackleg and soft rot-causing species in GB (P. atrosepticum), and three of the main causative agents in Europe (P. carotovorum subsp. brasiliense, P. parmentieri, Dickeya solani). Our aim was to investigate if the European strains could become stronger competitors in the GB potato ecosystem as the climate warms, on the basis of their aggressiveness in tubers at different temperatures. Principally, we found that the tissue macerating capacity of all four pathogens will increase in GB under all emissions scenarios. The predominant Pectobacterium and Dickeya species in Europe are able to cause disease in tubers under field conditions currently seen in GB but are not expected to become widely established in the future, at least on the basis of their aggressiveness in tubers relative to P. atrosepticum under GB conditions. Our key take-home messages are that the GB potato industry is well positioned to continue to thrive via current best management practices and continued reinforcement of existing legislation.


Assuntos
Mudança Climática , Enterobacteriaceae , Pectobacterium , Doenças das Plantas/microbiologia , Tubérculos/microbiologia , Solanum tuberosum/microbiologia , Enterobacteriaceae/crescimento & desenvolvimento , Pectobacterium/crescimento & desenvolvimento , Doenças das Plantas/etiologia , Temperatura , Reino Unido
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA