High-precision coding in visual cortex.

Individual neurons in visual cortex provide the brain with unreliable estimates of visual features. It is not known whether the single-neuron variability is correlated across large neural populations, thus impairing the global encoding of stimuli. We recorded simultaneously from up to 50,000 neurons in mouse primary visual cortex (V1) and in higher order visual areas and measured stimulus discrimination thresholds of 0.35° and 0.37°, respectively, in an orientation decoding task. These neural thresholds were almost 100 times smaller than the behavioral discrimination thresholds reported in mice. This discrepancy could not be explained by stimulus properties or arousal states. Furthermore, behavioral variability during a sensory discrimination task could not be explained by neural variability in V1. Instead, behavior-related neural activity arose dynamically across a network of non-sensory brain areas. These results imply that perceptual discrimination in mice is limited by downstream decoders, not by neural noise in sensory representations.

Two-photon frequency division multiplexing for functional in vivo imaging: a feasibility study.

Recently, we presented a new approach to create high-speed amplitude modulation of femtosecond laser pulses and tag multiple excitation beams with specific modulation frequencies. In this work, we discuss the utility of this method to record calcium signals in brain tissue with two-photon frequency-division multiplexing (2P-FDM) microscopy. While frequency-multiplexed imaging appears slightly inferior in terms of image quality as compared to conventional two-photon laser scanning microscopy due to shot noise-induced cross-talk between frequency channels, applying this technique to record average signals from regions of interest (ROI) such as neuronal cell bodies was found to be promising. We use phase information associated with each pixel or waveform within a selected ROI to phase-align and recombine the signals into one extended amplitude-modulated waveform. This procedure narrows the frequency detection window, effectively decreasing noise contributions from other frequency channels. Using theoretical analysis, numerical simulations, and in vitro imaging, we demonstrate a reduction of cross-talk by more than an order of magnitude and predict the usefulness of 2P-FDM for functional studies of brain activity.

Amplitude modulation of femtosecond laser pulses in the megahertz range for frequency-multiplexed two-photon imaging.

We present a frequency-multiplexed multi-site two-photon imaging method utilizing amplitude modulation of femtosecond laser pulses in the MHz range to tag each excitation beam and the corresponding fluorescence signals with specific frequencies. The frequency tags are generated with an interferometric scheme employing acousto-optic deflectors (AODs) to achieve precise spatial overlap of femtosecond laser pulses with periodically varying phase shift. Creating matching excitation beam patterns in each interferometer arm using multiple AOD driving frequencies, and subsequently overlapping these matching patterns, results in multiple encoded excitation beams with unique beat frequencies available for scanning. As a proof-of-concept, we demonstrate multiplexed two-photon image acquisition using test samples, and compare the performance of this approach to conventional two-photon laser scanning microscopy.

Evidence for long-lived, optically generated quenchers of excitons in single-walled carbon nanotubes.

The nonlinear dependence of near-infrared photoluminescence (PL) emission on excitation intensity has been measured for individual nanotubes representing six different (n,m) species. Significant deviations from linearity are observed for intensities as low as ~100 W/cm(2), and an approximate inverse correlation is found between nonlinearity and PL action cross section (brightness). A model in which all PL nonlinearity arises from exciton-exciton annihilation is insufficient to account for the experimental data using realistic parameters. It is proposed that additional nonlinear quenching arises from photoinduced quenching states or species with longer lifetimes than emissive excitons. Evidence is also found for metastable photogenerated PL quenchers with lifetimes up to 20 s.

Diameter-dependent bending dynamics of single-walled carbon nanotubes in liquids.

By relating nanotechnology to soft condensed matter, understanding the mechanics and dynamics of single-walled carbon nanotubes (SWCNTs) in fluids is crucial for both fundamental and applied science. Here, we study the Brownian bending dynamics of individual chirality-assigned SWCNTs in water by fluorescence microscopy. The bending stiffness scales as the cube of the nanotube diameter and the shape relaxation times agree with the semiflexible chain model. This suggests that SWCNTs may be the archetypal semiflexible filaments, highly suited to act as nanoprobes in complex fluids or biological systems.

Surfactant-dependent exciton mobility in single-walled carbon nanotubes studied by single-molecule reactions.

Measurements of stepwise photoluminescence quenching in individual, (n,m)-selected single-walled carbon nanotubes (SWCNTs) undergoing chemical reaction have been analyzed to deduce mobilities of optically generated excitons. For (7,5) nanotubes, the mean exciton range varies between approximately 140 and 240 nm for different surfactant coatings and correlates weakly with nanotube PL intensity. The results are consistent with a model of localized SWCNT excitons having substantial diffusional mobility along the nanotube axis.

Do inner shells of double-walled carbon nanotubes fluoresce?

The reported fluorescence from inner shells of double-walled carbon nanotubes (DWCNTs) is an intriguing and potentially useful property. A combination of bulk and single-molecule methods was used to study the spectroscopy, chemical quenching, mechanical rigidity, abundance, density, and TEM images of the near-IR emitters in DWCNT samples. DWCNT inner shell fluorescence is found to be weaker than SWCNT fluorescence by a factor of at least 10,000. Observable near-IR emission from DWCNT samples is attributed to SWCNT impurities.

Multidomain peptides as single-walled carbon nanotube surfactants in cell culture.

We present a series of short, multidomain peptides as biocompatible solubilizing agents of single-walled carbon nanotubes (SWCNTs). These peptides are organized into an ABA block motif, where the A block is composed of charged amino acids, such as glutamic acid, and the B block is composed of alternating hydrophilic and hydrophobic residues. The hydrophobic amino acid residues interact with SWCNT sidewalls, while the hydrophilic residues interact primarily with water in an aqueous solution. When many peptides assemble along the length of the nanotube, it becomes effectively encapsulated within a peptide nanofiber. This noncovalent interaction between the peptide and the nanotube solubilizes SWCNTs while keeping the electronic structure of the nanotube intact, thereby preserving the optical and electrical properties that make SWCNTs promising for use in biological applications. To assess the toxicity of these peptide coatings, they were added to cultures of NIH 3T3 mouse fibroblasts and the effect on cell viability was measured. Toxicity was found to be far lower than for ionic surfactants typically used for SWCNT suspension and similar to Pluronics. The near-IR fluorescence intensity of SWCNTs in peptide suspensions was comparable to that in Pluronics. Five surfactants were tested for their effect on the proliferation of NIH 3T3 cells with and without SWCNTs. Although some differences were observed among surfactants, in no case did the presence of SWCNTs make a statistically significant difference. Based on their ability to solubilize SWCNTs, the fluorescence of the suspended tubes, their minimal impact on cell viability, and their potential for easy chemical modification, multidomain peptides have been found to have excellent potential as a biocompatible surfactant for suspension of SWCNTs.

Dual-plane 3-photon microscopy with remote focusing.

3-photon excitation enables in vivo fluorescence microscopy deep in densely labeled and highly scattering samples. To date, 3-photon excitation has been restricted to scanning a single focus, limiting the speed of volume acquisition. Here, for the first time to our knowledge, we implemented and characterized dual-plane 3-photon microscopy with temporal multiplexing and remote focusing, and performed simultaneous in vivo calcium imaging of two planes beyond 600 µm deep in the cortex of a pan-excitatory GCaMP6s transgenic mouse with a per-plane framerate of 7 Hz and an effective 2 MHz laser repetition rate. This method is a straightforward and generalizable modification to single-focus 3PE systems, doubling the rate of volume (column) imaging with off-the-shelf components and minimal technical constraints.

Self-assembling peptide coatings designed for highly luminescent suspension of single-walled carbon nanotubes.

A series of self-assembling multidomain peptides have been designed, synthesized, and tested for their ability to individually suspend single-walled carbon nanotubes (SWCNTs) in water while preserving strong near-IR nanotube luminescence. Photometric and spectral measurements on individual SWCNTs revealed that emission in the common biocompatible coating agents Pluronic F127, ss-DNA, and BSA is approximately an order of magnitude weaker than in the bioincompatible ionic surfactant SDBS. By contrast, one of the engineered peptides gave SWCNT emission approximately 40% as intense as in SDBS. A strong inverse correlation was also found between the spectral line widths of coated SWCNTs and the efficiency of their emission. Peptides with rationally designed self-assembly properties appear to be promising coatings that may enable SWCNT optical sensing applications in biological environments.

Fullerene (C60) immunoconjugates: interaction of water-soluble C60 derivatives with the murine anti-gp240 melanoma antibody.

The first fullerene (C60) immunoconjugates have been prepared and characterized as an initial step toward the development of fullerene immunotherapy (FIT).

Optical clearing of skin enhanced with hyaluronic acid for increased contrast of optoacoustic imaging.

Enhanced delivery of optical clearing agents (OCA) through skin may improve sensitivity of optical and optoacoustic (OA) methods of imaging, sensing, and monitoring. This report describes a two-step method for enhancement of light penetration through skin. Here, we demonstrate that topical application of hyaluronic acid (HA) improves skin penetration of hydrophilic and lipophilic OCA and thus enhances their performance. We examined the OC effect of 100% polyethylene and polypropylene glycols (PPGs) and their mixture after pretreatment by HA, and demonstrated significant increase in efficiency of light penetration through skin. Increased light transmission resulted in a significant increase of OA image contrast in vitro. Topical pretreatment of skin for about 30 min with 0.5% HA in aqueous solution offers effective delivery of low molecular weight OCA such as a mixture of PPG-425 and polyethylene glycol (PEG)-400. The developed approach of pretreatment by HA prior to application of clearing agents (PEG and PPG) resulted in a ∼ 47-fold increase in transmission of red and near-infrared light and significantly enhanced contrast of OA images.

All-optical optoacoustic microscopy based on probe beam deflection technique.

Optoacoustic (OA) microscopy using an all-optical system based on the probe beam deflection technique (PBDT) for detection of laser-induced acoustic signals was investigated as an alternative to conventional piezoelectric transducers. PBDT provides a number of advantages for OA microscopy including (i) efficient coupling of laser excitation energy to the samples being imaged through the probing laser beam, (ii) undistorted coupling of acoustic waves to the detector without the need for separation of the optical and acoustic paths, (iii) high sensitivity and (iv) ultrawide bandwidth. Because of the unimpeded optical path in PBDT, diffraction-limited lateral resolution can be readily achieved. The sensitivity of the current PBDT sensor of 22 µV/Pa and its noise equivalent pressure (NEP) of 11.4 Pa are comparable with these parameters of the optical micro-ring resonator and commercial piezoelectric ultrasonic transducers. Benefits of the present prototype OA microscope were demonstrated by successfully resolving micron-size details in histological sections of cardiac muscle.

Enabling in vivo measurements of nanoparticle concentrations with three-dimensional optoacoustic tomography.

In this report, we demonstrate the feasibility of using optoacoustic tomography (OAT) to evaluate biodistributions of nanoparticles in animal models. The redistribution of single-walled carbon nanotubes (SWCNTs) was visualized in living mice. Nanoparticle concentrations in harvested organs were measured spectroscopically using the intrinsic optical absorption and fluorescence of SWCNTs. Observed increases in optoacoustic signal brightness in tissues were compared with increases in optical absorption coefficients caused by SWCNT accumulation. The methodology presented in this report can further be extended to calibrate the sensitivity of an optoacoustic imaging system for a range of changes in optical absorption coefficient values at specific locations or organs in a mouse body to enable noninvasive measurements of nanoparticle concentrations in vivo. Additionally, qualitative information provided by OAT and quantitative information obtained ex vivo may provide valuable feedback for advancing methods of quantitative analysis with OAT.

Length- and defect-dependent fluorescence efficiencies of individual single-walled carbon nanotubes.

Using near-infrared fluorescence videomicroscopy with spectrally selective excitation and imaging, more than 400 individual (10,2) single-walled carbon nanotubes (SWCNTs) have been studied in unsorted liquid dispersions. For each nanotube, the spatially integrated emission intensity was measured under controlled excitation conditions while its length was found either from direct imaging or from the diffusion coefficient computed by analyzing its Brownian motion trajectory. The studied nanotubes ranged in length from 170 to 5300 nm. For any length, a wide variation in emission intensities was observed. These variations are attributed to differing densities of nanotube imperfections that cause fluorescence quenching. The brightest nanotubes at each length (presumed near-pristine) show total emission nearly proportional to length. This implies a nearly constant fluorescence quantum yield and a constant absorption cross section per carbon atom, validating conventional Beer-Lambert analysis for finding concentrations of SWCNT species. Ensemble-averaged emission is also proportional to length, but at only ca. 40% of the near-pristine values. Further research is needed to investigate the extrinsic effects causing wide variation in quantum yields and assess their implications for SWCNT fluorimetry.

Biocompatible Gold Nanorod Conjugates for Preclinical Biomedical Research.

Gold nanorods with a peak absorption wavelength of 760 nm were prepared using a seed-mediated method. A novel protocol has been developed to replace hexadecyltrimethylammonium bromide on the surface of the nanorods with 16-mercaptohexadecanoic acid and metoxy-poly(ethylene glycol)-thiol, and the monoclonal antibody HER2. The physical chemistry properties of the conjugates were monitored through optical and zeta-potential measurements to confirm surface chemistry changes. The efficiency of the modifications was quantified through measurement of the average number of antibodies per gold nanorod. The conjugates were investigated for different cells lines: BT-474, MCF7, MCF10, MDCK, and fibroblast. The results show successful cell accumulation of the gold nanorod HER2 conjugates in cells with HER2 overexpression. Incubation of the complexes in heparinized mouse blood demonstrated the low aggregation of the metallic particles through stability of the spectral properties, as verified by UV/VIS spectrometry. Cytotoxicity analysis with LDH release and MTT assay confirms strong targeting and retention of functional activity of the antibody after their conjugation with gold nanorods. Silver staining confirms efficient specific binding to BT-474 cells even in cases where the nanorod complexes were incubated in heparinized mouse blood. This is confirmed through in vivo studies where, following intravenous injection of gold nanorod complexes, silver staining reveals noticeably higher rates of specific binding in mouse tumors than in healthy liver.The conjugates are reproducible, have strong molecular targeting capabilities, have long term stability in vivo and can be used in pre-clinical applications. The conjugates can also be used for molecular and optoacoustic imaging, quantitative sensing of biological substrates, and photothermal therapy.

Analyzing absorption backgrounds in single-walled carbon nanotube spectra.

The sources of broad backgrounds in visible-near-IR absorption spectra of single-walled carbon nanotube (SWCNT) dispersions are studied through a series of controlled experiments. Chemical functionalization of nanotube sidewalls generates background absorption while broadening and red-shifting the resonant transitions. Extensive ultrasonic agitation induces a similar background component that may reflect unintended chemical changes to the SWCNTs. No major differences are found between spectral backgrounds in sample fractions with average lengths between 120 and 650 nm. Broad background absorption from amorphous carbon is observed and quantified. Overlapping resonant absorption bands lead to elevated backgrounds from spectral congestion in samples containing many SWCNT structural species. A spectral modeling method is described for separating the background contributions from spectral congestion and other sources. Nanotube aggregation increases congestion backgrounds by broadening the resonant peaks. Essentially no background is seen in sorted pristine samples enriched in a single semiconducting (n,m) species. By contrast, samples enriched in mixed metallic SWCNTs show broad intrinsic absorption backgrounds far from the resonant transitions. The shape of this metallic background component and its absorptivity coefficient are quantitatively assessed. The results obtained here suggest procedures for preparing SWCNT dispersions with minimal extrinsic background absorptions and for quantifying the remaining intrinsic components. These findings should allow improved characterization of SWCNT samples by absorption spectroscopy.

Subdiffraction far-field imaging of luminescent single-walled carbon nanotubes.

Far-field near-infrared fluorescence microscopy of single-walled carbon nanotubes (SWNTs) has been hampered by the diffraction limit to resolution. A new analysis method is presented that allows subwavelength (

Electric field quenching of carbon nanotube photoluminescence.

The effect of external electric fields on the photoluminescence intensity of single-walled carbon nanotubes was investigated for individual nanotubes and bulk samples in polymeric films. Fields of up to 10(7) V/m caused dramatic, reversible decreases in emission intensity. Quenching efficiency varied as the cosine of the angle between the field and nanotube axis and decreased with increasing optical band gap. Photoluminescence intensity was found to follow a reciprocal hyperbolic cosine dependence on electric field.

Strain measurements on individual single-walled carbon nanotubes in a polymer host: structure-dependent spectral shifts and load transfer.

The fluorescence spectra of individual semiconducting single-walled carbon nanotubes embedded in polymer films were measured during the application of controlled stretching and compressive strains. Nanotube band gaps were found to shift in systematic patterns that depend on the (n,m) structural type and are in excellent agreement with the predictions of theoretical models. Loss of nanotube-host adhesion was revealed by abrupt irregularities in plots of spectral shift vs strain.