Detalhe da pesquisa
1.
Cardinal v.3: a versatile open-source software for mass spectrometry imaging analysis.
Nat Methods
; 20(12): 1883-1886, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37996752
2.
A computational framework for the inference of protein complex remodeling from whole-proteome measurements.
Nat Methods
; 20(10): 1523-1529, 2023 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-37749212
3.
MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics.
Mol Cell Proteomics
; 22(1): 100477, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36496144
4.
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images.
Bioinformatics
; 39(2)2023 02 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-36744928
5.
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks.
Bioinformatics
; 39(39 Suppl 1): i494-i503, 2023 06 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-37387179
6.
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.
J Proteome Res
; 22(2): 551-556, 2023 02 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-36622173
7.
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.
J Proteome Res
; 22(8): 2641-2659, 2023 08 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-37467362
8.
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.
J Proteome Res
; 22(5): 1466-1482, 2023 05 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37018319
9.
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.
Nat Methods
; 17(10): 981-984, 2020 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-32929271
10.
Do-calculus enables estimation of causal effects in partially observed biomolecular pathways.
Bioinformatics
; 38(Suppl 1): i350-i358, 2022 06 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-35758817
11.
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline.
J Proteome Res
; 21(1): 289-294, 2022 01 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34919405
12.
Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework.
Clin Proteomics
; 19(1): 8, 2022 Apr 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-35439943
13.
Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition.
Mol Cell Proteomics
; 19(2): 421-430, 2020 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-31888964
14.
MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures.
Mol Cell Proteomics
; 19(10): 1706-1723, 2020 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-32680918
15.
Selection of Features with Consistent Profiles Improves Relative Protein Quantification in Mass Spectrometry Experiments.
Mol Cell Proteomics
; 19(6): 944-959, 2020 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-32234965
16.
New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics.
Bioinformatics
; 36(Suppl_2): i745-i753, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381824
17.
Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations.
Bioinformatics
; 36(Suppl_1): i300-i308, 2020 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32657378
18.
A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.
Mol Cell Proteomics
; 18(9): 1836-1850, 2019 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31289117
19.
Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues.
Bioinformatics
; 35(14): i208-i217, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31510675
20.
Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays.
Mol Cell Proteomics
; 17(5): 913-924, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29438992