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1.
Anal Chem ; 96(3): 1354-1361, 2024 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-38194439

RESUMO

A high-precision photoacoustic (PA) gas analyzer for fast dynamic measurement of ambient nitrogen dioxide (NO2) was developed. The PA analyzer used a differential PA cell combined with two mufflers to achieve rapid gas flow gas detection. A high-power laser diode (LD) with a center wavelength of 450 nm was used as the PA signal excitation source. To reduce the saturated absorption effect of NO2, ambient air was pumped into the analyzer at a flow rate of 900 sccm. Two mufflers were combined with the differential PA cell to reduce the noise caused by the airflow and pump. The parameters of the mufflers were optimized by using a finite element method. The experimental results showed that the gas flow noise was suppressed by 95%. The response time of the PAS analyzer was 34 s. The detection limits of the analyzer were 0.64 and 0.17 ppb when the integration times were 1 and 15 s, respectively. A 120 h continuous monitoring result was compared with the data from the National Environmental Monitoring Station to demonstrate the high reliability of the analyzer.

2.
Anal Chem ; 96(3): 1046-1053, 2024 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-38196109

RESUMO

An ultrahigh sensitive trace gas sensing system was presented with dual cantilever-based differential photoacoustic detection. By combining the double enhancement of multipass absorption and optical differential detection, the gas detection sensitivity was significantly improved. The dual-channel synchronous photoacoustic detection was realized by fiber-optic Fabry-Perot interference spectrum multiplexing. The photoacoustic signals detected by two fiber-optic cantilever microphones installed in a differential photoacoustic cell (DPAC) were out of phase, while the detected gas flow noises were in phase. The optical differential detection method achieved both highly sensitive optical interference measurement and differential noise suppression. In the multipass configuration, the interaction path between excitation light and target gas achieved 4.1 m, which improved the photoacoustic signal by an order of magnitude compared with a single reflection. The maximum gas flow allowed by the system based on the DPAC was 250 sccm, which realized the dynamic monitoring of H2S in the SF6 background. The detection limit for H2S in SF6 background was 5.1 ppb, which corresponds to the normalized noise equivalent absorption coefficient of 9 × 10-10 cm-1 W Hz-1/2.

3.
Anal Chem ; 95(48): 17477-17485, 2023 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-38008905

RESUMO

A fiber-optic photoacoustic (PA) gas sensor with multiplexed Fabry-Pérot (F-P) interferometric cantilevers is demonstrated. A compact cylindrical nonresonant PA tube with a volume of only 0.45 mL is designed. The PA signal is measured by two symmetrically installed fiber-optic interferometric cantilever microphones (FOICMs) to improve the signal-to-noise ratio (SNR). For multiplexing the two cantilevers by a single demodulation system, a dual cavity length synchronous measurement method based on total-phase demodulation algorithm with ultrahigh resolution is developed. The PA signal detection is realized by the second-harmonic wavelength modulation spectroscopy (2f-WMS) technique. The sensor performance is verified by conducting the detection of trace acetylene (C2H2). The normalized noise equivalent absorption (NNEA) coefficient is 2.5 × 10-9 cm-1·W·Hz-1/2, and the minimum detection limit (MDL) downs to about 0.2 ppm with an averaging time of 1 s. The fiber-optic PA gas sensor has characteristics of high resolution and immunity to electromagnetic and vibration interference. Furthermore, the technical scheme of the multiplexed cantilever demodulation shows great potential for remote multipoint monitoring of gases in harsh environments.

4.
Acta Biochim Biophys Sin (Shanghai) ; 54(2): 187-198, 2022 01 25.
Artigo em Inglês | MEDLINE | ID: mdl-35130623

RESUMO

The ΔN6 truncation is the main posttranslational modification of ß-microglobulin (ßM) found in dialysis-related amyloid. Investigation of the interaction of wild-type (WT) ßM with N-terminally truncated variants is therefore of medical relevance. However, it is unclear which residues among the six residues at the N-terminus are crucial to the interactions and the modulation of amyloid fibril propagation of ßM. We herein analyzed homo- and heterotypic seeding of amyloid fibrils of WT human ßM and its N-terminally-truncated variants ΔN1 to ΔN6, lacking up to six residues at the N-terminus. At acidic pH 2.5, we produced amyloid fibrils from recombinant, WT ßM and its six truncated variants, and found that ΔN6 ßM fibrils exhibit a significantly lower conformational stability than WT ßM fibrils. Importantly, under more physiological conditions (pH 6.2), we assembled amyloid fibrils only from recombinant, ΔN4, ΔN5, and ΔN6 ßM but not from WT ßM and its three truncated variants ΔN1 to ΔN3. Notably, the removal of the six, five or four residues at the N-terminus leads to enhanced fibril formation, and homo- and heterotypic seeding of ΔN6 fibrils strongly promotes amyloid fibril formation of WT ßM and its six truncated variants, including at more physiological pH 6.2. Collectively, these results demonstrated that the residues 4 to 6 at the N-terminus particularly modulate amyloid fibril propagation of ßM and the interactions of WT ßM with N-terminally truncated variants, potentially indicating the direct relevance to the involvement of the protein's aggregation in dialysis-related amyloidosis.


Assuntos
Amiloide , Microglobulina beta-2 , Amiloide/química , Amiloide/genética , Humanos , Concentração de Íons de Hidrogênio , Microglobulina beta-2/química , Microglobulina beta-2/genética
5.
Langmuir ; 35(17): 5864-5870, 2019 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-30970211

RESUMO

Nature-inspired porous structures are highly desired in the fields of new materials, sustainable energy, biological and chemical science, and so forth. Here, a new strategy for the fabrication of continuous, gradient nanoporous polystyrene- block-poly(2-vinylpyridine) (PS- b-P2VP) film is established. The continuous nanopore gradient along the direction of film thickness (∼120 µm) is achieved via delayed directional diffusion of dynamic binary solvent of ethanol/water and selective swelling of P2VP domains. Ethanol in binary solvent diffuses into the film from one side to another, which is retarded by the water gate as water is concentrated at the film surface. The delayed diffusion matches the swelling rate of P2VP domains, forming the continuous nanopore gradient normal to the film surface.

6.
Soft Matter ; 15(15): 3133-3148, 2019 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-30864576

RESUMO

Natural biological materials usually adopt functional gradient designs within interfacial regions to fulfil unusual mechanically-challenging demands. Manufacturing analogous gradients to alleviate premature failures for synthetic interfaces has remained challenging until recently, where magnetically-actuated gradient nanocomposites (MA-G-NCs) have emerged as a promising processing technique. The essence of this technique lies in controlling the spatial distribution of nanoreinforcements (usually particles) inside a polymer matrix through a magnetophoresis process. Herein, we present a theory-experiment-combined study on the evolution kinetics and equilibrium distribution of the nanoparticles during the magnetophoresis process and consequently to explore the spatial and temporal tunability of the MA-G-NCs. Using a simplified drift-diffusion theory as the guide, we determine two critical processing parameters for the MA-G-NCs: the applied magnetic field and the actuation duration. By systematically varying these two parameters independently, we experimentally demonstrate that the profile of the nanoparticle distribution inside the MA-G-NCs can be finely tuned both spatially and temporally. In order to quantify the volume fraction of the nanoparticles along the cross section of the MA-G-NCs, we propose a mechanics-based method by site-specifically measuring the local elastic modulus and converting back to the volume fractions based on an established modulus-fraction correlation. The nanoparticle concentration profiles obtained thereby are validated by morphological characterizations and also agree well with theoretical predictions based on the drift-diffusion theory. Our combined results indicate that the magnetophoresis-induced evolution of the nanoparticles follows approximately the drift-diffusion transport process and the gradient profile of the MA-G-NCs is highly controllable and programmable. The presented study not only advances the fundamental understanding of the evolution kinetics of the nanoparticles under the effect of magnetophoresis, but also establishes the critical processing-structure-property relationships for the MA-G-NCs that should guide future development of customized interfaces with desired mechanical and physical property gradients.

7.
Small ; 14(41): e1802717, 2018 10.
Artigo em Inglês | MEDLINE | ID: mdl-30272833

RESUMO

For mechanically protective coatings, the coating material usually requires sufficient stiffness and strength to resist external forces and meanwhile matched mechanical properties with the underneath substrate to maintain the structural integrity. These requirements generate a conflict that limits the coatings from achieving simultaneous surface properties (e.g., high wear-resistance) and coating/substrate interfacial durability. Herein this conflict is circumvented by developing a new manufacturing technique for functional gradient coatings (FGCs) with the material composition and mechanical properties gradually varying crossing the coating thickness. The FGC is realized by controlling the spatial distribution of magnetic-responsive nanoreinforcements inside a polymer matrix through a magnetic actuation process. By concentrating the reinforcements with hybrid sizes at the surface region and continuously diminishing toward the coating/substrate interface, the FGC is demonstrated to exhibit simultaneously high surface hardness, stiffness, and wear-resistance, as well as superb interfacial durability that outperforms the homogeneous counterparts over an order of magnitude. The concept of FGC represents a mechanically optimized strategy in achieving maximal performances with minimal use and site-specific distribution of the reinforcements, in accordance with the design principles of many load-bearing biological materials. The presented manufacturing technique for gradient nanocomposites can be extended to develop various bioinspired heterogeneous materials with desired mechanical performances.


Assuntos
Nanocompostos/química , Polímeros/química
8.
Soft Matter ; 10(18): 3301-10, 2014 May 14.
Artigo em Inglês | MEDLINE | ID: mdl-24637918

RESUMO

A new concept of gecko-inspired double-sided adhesives (DSAs) is presented. The DSAs, constructed by dual-angled (i.e. angled base and angled tip) micro-pillars on both sides of the backplane substrate, are fabricated by combinations of angled etching, mould replication, tip modification, and curing bonding. Two types of DSA, symmetric and antisymmetric (i.e. pillars are patterned symmetrically or antisymmetrically relative to the backplane), are fabricated and studied in comparison with the single-sided adhesive (SSA) counterparts through both non-conformal and conformal tests. Results indicate that the DSAs show controllable and bidirectional adhesion. Combination of the two pillar-layers can either amplify (for the antisymmetric DSA, providing a remarkable and durable adhesion capacity of 25.8 ± 2.8 N cm⁻² and a high anisotropy ratio of ∼8) or counteract (for the symmetric DSA, generating almost isotropic adhesion) the adhesion capacity and anisotropic level of one SSA (capacity of 16.2 ± 1.7 N cm⁻² and anisotropy ratio of ∼6). We demonstrate that these two DSAs can be utilized as a facile fastener for two individual objects and a small-scale delivery setup, respectively, complementing the functionality of the commonly studied SSA. As such, the double-sided patterning is believed to be a new branch in the further development of biomimetic dry adhesives.


Assuntos
Acrilatos/química , Adesivos/química , Poliuretanos/química , Adesividade , Animais , Biomimética , Lagartos
9.
Phys Chem Chem Phys ; 15(47): 20764-70, 2013 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-24196423

RESUMO

Geckos' outstanding abilities to adhere to various surfaces are widely credited to the large actual contact areas of the fibrillar and hierarchical structures on their feet. These special features regulate the essential structural compliance for every attachment and thus provide robust yet reversible adhesions. Inspired by gecko's feet and our commonly used double-faced tape, we have successfully fabricated a gecko-inspired double-sided dry adhesive by using porous anodic alumina template assisted nano-wetting on a stiff polymer. It was determined that the obtained 2-sided structure showed largely decreased effective stiffness compared with its 1-sided counterpart, which favored better compliance and interfacial integrity. We also demonstrated that the repeatable double-sided adhesive improved the macroscopic normal and shear adhesion capacities over the widely-studied 1-side structure by ~50% and ~85%, respectively. By using the synthetic double-sided adhesive, the usage of traditional pressure-sensitive/chemical adhesives could be well avoided. Besides, the double-sided nanostructures showed great potential in finding new interesting properties and practical applications for the synthetic dry adhesives.


Assuntos
Adesivos/química , Óxido de Alumínio/química , Queratinas/química , Nanofibras/química , Nanoporos , Polímeros/química , Propriedades de Superfície
10.
Appl Opt ; 52(20): 5022-9, 2013 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-23852218

RESUMO

This paper investigates the use of feature dimensionality reduction approaches for high-dimensional data analysis. Most of the existing preserving projection methods are based on similarity, such as the well-known locality-preserving projections, neighborhood-preserving embedding, and sparsity-preserving projections. Here, we propose a simple yet very efficient preserving projection method based on sparsity and dissimilarity for feature extraction, named dissimilarity sparsity-preserving projections, which is an extended version of sparsity-preserving projections. Both projection coefficients and reconstructive residuals are considered in our proposed framework. We give an idea of a "dissimilarity metric" as the measurement of the relationship among the object data. If the value of the dissimilarity metric of two samples is large, the possibility of them belonging to the same class is small. The proposed methods do not have to preset the number of neighbors and heat kernel width, which is one of the important differences from other projection methods. In practical applications, an approximately direct and complete solution is obtained for the proposed algorithm. Experimental results on three widely used face datasets demonstrate that the proposed framework could achieve competitive performance in terms of accuracy and efficiency.


Assuntos
Face/anatomia & histologia , Processamento de Imagem Assistida por Computador/métodos , Reconhecimento Automatizado de Padrão/métodos , Algoritmos , Computadores , Bases de Dados Factuais , Humanos , Software
11.
ACS Nano ; 17(11): 10078-10089, 2023 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-37260374

RESUMO

Stimuli-responsive surfaces with reversible surface topography and controllable physical and mechanical properties are highly desirable for various engineering applications: e.g., information encoding, anticounterfeiting, micromanipulations, displays, etc. Here we present a digital type of stimuli-responsive surface composed of discrete silicon scales supported on individual core-shell magnetic micropillars (MMP) and realize precise control over the local topography of the surfaces. The individual MMP can be reversibly modulated between two contrasting bending states (state 0, hard to bend; state 1, easy to bend) by controlling the spatial distribution of the magnetic nanoparticles inside the pillar shells. These two different states of the micropillars induce a completely different topography of the supporting scales that can be utilized as mechanical pixels upon applying actuation magnetic fields. We further build a three-dimensional (3D) microcontrolling platform for digital modulation of the micropillar states. With this platform, a large array of 50 × 50 MMP surfaces can be programmed and reprogrammed into any combination of the local states by simply reading a matrix of binary digits. Such a digital modulation process facilitates the practical application of the MMP surfaces for fast and reprogrammable display of various structural patterns, as demonstrated for microscale letters, millimeter-scale QR code, and complex Chinese characters. The digital modulation and on-demand reprogrammability of the MMP surfaces reported here are expected to advance the development of various other forms of digital mechanical metasurfaces that can easily transform digital information into encoded mechanical responses.

12.
Polymers (Basel) ; 15(5)2023 Feb 23.
Artigo em Inglês | MEDLINE | ID: mdl-36904370

RESUMO

Dental resin composites are universal restorative materials, and various kinds of fillers are used to reinforce their mechanical properties. However, a combined study on the microscale and macroscale mechanical properties of dental resin composites is missing, and the reinforcing mechanism of the composites is still not fully clarified. In this work, the effects of the nano-silica particle on the mechanical properties of dental resin composites were studied by combined dynamic nanoindentation tests and macroscale tensile tests. The reinforcing mechanism of the composites was explored by combining near-infrared spectroscopy, scanning electron microscope, and atomic force microscope characterizations. It was found that the tensile modulus increased from 2.47 GPa to 3.17 GPa, and the ultimate tensile strength increased from 36.22 MPa to 51.75 MPa, with the particle contents increasing from 0% to 10%. From the nanoindentation tests, the storage modulus and hardness of the composites increased by 36.27% and 40.90%, respectively. The storage modulus and hardness were also found to increase by 44.11% and 46.46% when the testing frequency increased from 1 Hz to 210 Hz. Moreover, based on a modulus mapping technique, we found a boundary layer in which the modulus gradually decreased from the edge of the nanoparticle to the resin matrix. Finite element modeling was adopted to illustrate the role of this gradient boundary layer in alleviating the shear stress concentration on the filler-matrix interface. The present study validates mechanical reinforcement and provides a potential new insight for understanding the reinforcing mechanism of dental resin composites.

13.
Adv Mater ; 35(26): e2209166, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36965066

RESUMO

Aiming to solve the trade-off of "room-temperature phosphorescence (RTP)-flexibility" in principle, organic RTP crystals with elastic/plastic deformation are realized. These properties are mainly due to the divisional aggregation structures of aromatics and alkoxy chains, and can be modulated by the controllable molecular configurations. The longest RTP lifetime of 972.3 ms is achieved as the highest record for organic flexible crystals. Plastic crystals with persistent RTP are realized, which can be applied into biomedical optical technologies by afterglow delivery. Moreover, the relationship among elastic/plastic deformation, RTP property, and aggregated structures is established. The elastic/plastic deformation is mainly determined by the difference of interaction energies from the aromatics and the alkoxy chains. For the BP-OR series with twisted configurations, the alkoxy chain with the middle length is favorable for the RTP property, while the strength of the π-π coupling is the cruical factor to the RTP property of the Xan-OR series with planar skeletons. A new way to promote the development of flexible RTP crystals, by modulation of aggregated structures as well as rational distribution of intermolecular interactions, is explored.

14.
Photoacoustics ; 33: 100560, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-38021295

RESUMO

An integrated near-infrared fiber-optic photoacoustic sensing demodulator was established for ultra-high sensitivity gas detection. The demodulator has capacities of interference spectrum acquisition and calculation, laser modulation control as well as digital lock-in amplification. FPGA was utilized to realize all the control and signal processing functions, which immensely improved the integration and stability of the system. The photoacoustic signal detection based on fiber-optic Fabry-Perot (F-P) acoustic sensor was realized by applying ultra-high resolution spectral demodulation technique. The detectable frequency of photoacoustic signal achieved 10 kHz. The system integrated lock-in amplification technology, which made the noise sound pressure and dynamic response range of sound pressure detection reached 3.7 µPa/√Hz @1 kHz and 142 dB, respectively. The trace C2H2 gas was tested with a multi-pass resonant photoacoustic cell. Ultra-high sensitivity gas detection was accomplished, which was based on high acoustic detection sensitivity and the matching digital lock-in amplification. The system detection limit and normalized noise equivalent absorption (NNEA) coefficient were reached 3.5 ppb and 6.7 × 10-10 cm-1WHz-1/2, respectively. The devised demodulator can be applied for long-distance gas measurement, which depends on the fact that both the near-infrared photoacoustic excitation light and the probe light employ optical fiber as transmission medium.

15.
ACS Appl Mater Interfaces ; 15(39): 46292-46299, 2023 Oct 04.
Artigo em Inglês | MEDLINE | ID: mdl-37733926

RESUMO

The pyroelectric effect is used in a wide range of applications such as infrared (IR) detection and thermal energy harvesting, which require the pyroelectric materials to simultaneously have a high pyroelectric coefficient and a low dielectric constant for high figures of merit. However, in conventional proper ferroelectrics, the positive correlation between the pyroelectric coefficient and the dielectric constant imposes an insurmountable challenge in upgrading the figures of merit. Here, we explored superior pyroelectricity in [(CH3)4N][FeCl4] (TMA-FC) and [(CH3)4N][FeCl3Br] (TMA-FCB) molecular ferroelectric plastic crystals, which could decouple this positive correlation due to the nature of improper polarization behavior. Therefore, TMA-FC and TMA-FCB derive a high pyroelectric coefficient and a low dielectric constant simultaneously, yielding record-high figures of merit around room temperature. Furthermore, the favorable plasticity enables ferroelectric crystals to attach surfaces with different shapes for device design and integration. More interestingly, the molecular ferroelectrics could be softened and reshaped at elevated temperatures without decay in pyroelectricity, making them recyclable for cost savings and e-waste reduction. Combined with the facile fabrication process, the findings of this work would open avenues for employing molecular ferroelectric plastic crystals in the manufacture of high-performance pyroelectric devices.

16.
Heliyon ; 8(9): e10554, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-36119854

RESUMO

Monomer ratios play a crucial role on the performances of dental resins, the optimal monomer ratios for dental resins are determined by combining the degree of conversion (DC), rate of polymerization (Rp), and mechanical properties, based on commonly-used Bis-GMA (bisphenol A-glycidyl methacrylate), UDMA (urethane dimethacrylate), and TEGDMA (triethyleneglycol dimethacrylate) resins. The DC and mechanical properties of the dental resins are examined by NIR (Near Infrared Ray) spectroscopy and nanoindentation tests, respectively. The results indicate that the Rp increases while the DC decreases with the loading content of Bis-GMA or UDMA in dental resins (i.e., Bis-GMA/TEGDMA and UDMA/TEGDMA). Meanwhile, both elastic modulus and hardness also present a tendency to increase. Various different monomers maybe create a strong polymer matrix in proper proportions, comprehensively comparing the performances of dental resins in different monomer ratios, the cured resins containing Bis-GMA (15-35 wt%), UDMA (37-60 wt%) and TEGDMA (20-35 wt%) show better material properties. The present study offers a quantitative analysis for Bis-GMA/UDMA/TEGDMA dental resins as well as provides guidance for the research of dental resins.

17.
ACS Appl Mater Interfaces ; 14(38): 43802-43814, 2022 Sep 28.
Artigo em Inglês | MEDLINE | ID: mdl-36100583

RESUMO

Creating reconfigurable and recyclable soft microrobots that can execute multimodal locomotion has been a challenge due to the difficulties in material processing and structure engineering at a small scale. Here, we propose a facile technique to manufacture diverse soft microrobots (∼100 µm in all dimensions) by mechanically assembling modular magnetic microactuators into different three-dimensional (3D) configurations. The module is composed of a cubic micropillar supported on a square substrate, both made of elastomer matrix embedded with prealigned magnetic nanoparticle chains. By directionally bonding the sides or backs of identical modules together, we demonstrate that assemblies from only two and four modules can execute a wide range of locomotion, including gripping microscale objects, crawling and crossing solid obstacles, swimming within narrow and tortuous microchannels, and rolling along flat and inclined surfaces, upon applying proper magnetic fields. The assembled microrobots can additionally perform pick-transfer-place and cargo-release tasks at the microscale. More importantly, like the game of block-building, the microrobots can be disassembled back to separate modules and then reassembled to other configurations as demanded. The present study not only provides a versatile and economic manufacturing technique for reconfigurable and recyclable soft microrobots, enabling unlimited design space for diverse robotic locomotion from limited materials and module structures, but also extends the functionality and dexterity of existing soft robots to microscale that should facilitate practical applications at such small scale.

18.
Nat Commun ; 13(1): 3491, 2022 06 17.
Artigo em Inglês | MEDLINE | ID: mdl-35715417

RESUMO

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease. Misfolded Cu, Zn-superoxide dismutase (SOD1) has been linked to both familial and sporadic ALS. SOD1 fibrils formed in vitro share toxic properties with ALS inclusions. Here we produced cytotoxic amyloid fibrils from full-length apo human SOD1 under reducing conditions and determined the atomic structure using cryo-EM. The SOD1 fibril consists of a single protofilament with a left-handed helix. The fibril core exhibits a serpentine fold comprising N-terminal segment (residues 3-55) and C-terminal segment (residues 86-153) with an intrinsic disordered segment. The two segments are zipped up by three salt bridge pairs. By comparison with the structure of apo SOD1 dimer, we propose that eight ß-strands (to form a ß-barrel) and one α-helix in the subunit of apo SOD1 convert into thirteen ß-strands stabilized by five hydrophobic cavities in the SOD1 fibril. Our data provide insights into how SOD1 converts between structurally and functionally distinct states.


Assuntos
Esclerose Lateral Amiotrófica , Superóxido Dismutase-1/química , Amiloide/química , Microscopia Crioeletrônica , Humanos , Mutação
19.
J Biomed Biotechnol ; 2011: 480294, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-22174556

RESUMO

With the availability of more and more genome-scale protein-protein interaction (PPI) networks, research interests gradually shift to Systematic Analysis on these large data sets. A key topic is to predict protein complexes in PPI networks by identifying clusters that are densely connected within themselves but sparsely connected with the rest of the network. In this paper, we present a new topology-based algorithm, HKC, to detect protein complexes in genome-scale PPI networks. HKC mainly uses the concepts of highest k-core and cohesion to predict protein complexes by identifying overlapping clusters. The experiments on two data sets and two benchmarks show that our algorithm has relatively high F-measure and exhibits better performance compared with some other methods.


Assuntos
Biologia Computacional/métodos , Mapeamento de Interação de Proteínas/métodos , Algoritmos , Bases de Dados de Proteínas , Proteínas Fúngicas/química , Modelos Estatísticos , Linguagens de Programação , Proteínas/metabolismo , Reprodutibilidade dos Testes , Saccharomyces cerevisiae/genética , Software
20.
Neuroreport ; 32(9): 748-756, 2021 06 09.
Artigo em Inglês | MEDLINE | ID: mdl-33994521

RESUMO

Glioma is the most widespread and malignant brain tumor in the central nervous system of adult, causing multiple cancer-associated deaths worldwide. Here, we identified the impact of circGFRA1 on glioma, and aimed to uncover the underlying molecular mechanism. The expression of circGFRA1 of glioma specimens was evaluated by using quantitative reverse transcription PCR. Cell viability, proliferation, colony formation, apoptosis and migration were estimated utilizing CCK-8, EdU staining, colony formation assay, TUNEL staining and Transwell assay, respectively. Bioinformatics analysis, luciferase assay and RNA co-immunoprecipitation was utilized for verification of direct binding between circGFRA1 and miR-99a. Western blot was applied to investigate protein expression in U251 cells. The results showed that circGFRA1 expression was overexpressed in glioma specimens. Knockdown circGFRA1 declined viability, colony formation, proliferation and migrative potential, but enhanced U251 cell apoptosis. Moreover, circGFRA1 acts as a microRNA sponge for miR-99a. Furthermore, miR-99a was involved in the circGFRA1-regulated glioma cell behaviors. Silencing circGFRA1 reduced p/t-AKT, p/t-FOXO1 and p/t-mTOR expression levels via upregulating miR-99a expression. In conclusion, our study demonstrated that knockdown circGFRA1 inhibits glioma cell proliferation and migration by upregulating microRNA-99a.


Assuntos
Neoplasias Encefálicas/genética , Movimento Celular/genética , Proliferação de Células/genética , Glioma/genética , MicroRNAs/genética , RNA Circular/genética , Apoptose/genética , Neoplasias Encefálicas/patologia , Sobrevivência Celular/genética , Regulação Neoplásica da Expressão Gênica , Técnicas de Silenciamento de Genes , Glioma/patologia , Humanos , Regulação para Cima
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