Detalhe da pesquisa
1.
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE.
Genome Res
; 34(1): 119-133, 2024 Feb 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-38190633
2.
scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data.
Brief Bioinform
; 24(2)2023 03 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36813563
3.
A field guide to cultivating computational biology.
PLoS Biol
; 19(10): e3001419, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34618807
4.
Scalable workflow for characterization of cell-cell communication in COVID-19 patients.
PLoS Comput Biol
; 18(10): e1010495, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-36197936
5.
Whole genome duplication in oral squamous cell carcinoma in patients younger than 50 years: implications for prognosis and adverse clinicopathological factors.
Genes Chromosomes Cancer
; 61(9): 561-571, 2022 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-35670448
6.
LC-N2G: a local consistency approach for nutrigenomics data analysis.
BMC Bioinformatics
; 21(1): 530, 2020 Nov 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-33203358
7.
Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma.
Prostate
; 80(6): 508-517, 2020 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-32119131
8.
3D reconstruction of spatial expression.
Nat Methods
; 19(5): 526-527, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35577956
9.
DCARS: differential correlation across ranked samples.
Bioinformatics
; 35(5): 823-829, 2019 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30102408
10.
bcGST-an interactive bias-correction method to identify over-represented gene-sets in boutique arrays.
Bioinformatics
; 35(8): 1350-1357, 2019 04 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30215668
11.
One-Time Fecal Immunochemical Screening for Advanced Colorectal Neoplasia in Patients with CKD (DETECT Study).
J Am Soc Nephrol
; 30(6): 1061-1072, 2019 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-31040191
12.
Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.
BMC Bioinformatics
; 20(Suppl 19): 660, 2019 Dec 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-31870278
13.
scDC: single cell differential composition analysis.
BMC Bioinformatics
; 20(Suppl 19): 721, 2019 Dec 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-31870280
14.
Differential distribution improves gene selection stability and has competitive classification performance for patient survival.
Nucleic Acids Res
; 44(13): e119, 2016 07 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-27190235
15.
Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.
J Proteome Res
; 16(7): 2359-2369, 2017 07 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-28580786
16.
Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development.
BMC Genomics
; 18(1): 946, 2017 Dec 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29202695
17.
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.
Bioinformatics
; 31(17): 2822-8, 2015 Sep 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25910695
18.
ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.
Bioinformatics
; 31(11): 1851-3, 2015 Jun 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25644269
19.
Authors' Reply.
J Am Soc Nephrol
; 30(11): 2276-2277, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-31597717
20.
BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data.
Nat Commun
; 15(1): 509, 2024 Jan 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-38218939