Effects of vegetation type differences induced by human disturbance on the nutrition strategy and gut microbiota of Siberian roe deer.

The Siberian roe deer (Capreolus pygargus) is a widely distributed ungulate in northeast China. Due to a series of human disturbance activities such as large-scale forest cutting, deforestation and reclamation, road construction in the past, the appearance and internal structure of forest vegetation in the habitat of Siberian roe have changed significantly. At the same time, Siberian roe population had a series of ecological adaptation responses in the face of such habitat changes. Therefore, two typical vegetation types with differences were selected in the Muling Forest, China. We used nutritional ecology and microbial metagenomic analysis techniques to compare the nutritional selection strategy and the structure and functional characteristics of faecal microbiota of Siberian roe groups in two vegetation types. The results showed that the α diversity of dietary and gut microbes of deer in Natural Forest was higher than that in Plantation Forest. However, the gut microbes of the Plantation Forest group contained more unique enzymes in the functional pathways of carbon metabolism and biosynthesis of amino acids. This study suggests that habitat type is associated with plant community composition, and contributes to changes in the intake proportions of major macronutrients by altering the availability, quality, and composition of certain edible plants. Feeding behaviour may be an important regulatory factor of gut microbiota structure and function of deer. The metabolic function of gut microbiota to different nutrients may affect the microbial community structure. Therefore, our results suggest that the gut microbes of Siberian roe may have coevolved with their diets, and reflect the adaptability of deer populations to environmental changes (e.g., vegetation type). Our study provides new insights into how spatial heterogeneity affects nutrition and microecosystems by describing the interactions among the environment, diet, and symbiotic gut microbes in wild ungulates.

Effects of plant community and altitude on food composition of Cervus elaphus wallichii during the withered grass period on the Tibetan Plateau, China.

How Tibetan red deer (Cervus elaphus wallichii) acclimates to high altitude environment during the withered grass period is one of the challenges in maintaining their nutrient intake. It is an important basis to study the nutritional ecology of wild large ungulates in alpine ecosystems by investigating the changes in plant communities with altitude during the withered grass period and how these changes affect the food composition of Tibetan red deer. In this study, we selected the Tibetan red deer in Sangri County, Shannan region of Tibet as the research subject. We carried out field surveys on the altitude, plant communities, and feeding traces of the Tibetan red deer in March of 2021 and 2022 during the withered grass period on the Tibetan Plateau. Detrended correspondence analysis and canonical correspondence analysis were used to study altitudinal variations in plant communities and the regularity of food composition. The results showed that during the period of withered grass, Tibetan red deer ate primarily Salix daltoniana, Rosa macrophylla var. glandulifera and Dasiphora parvifolia. S. daltoniana accounted for more than 50% of the food composition, as the main food resources for red deer in withered grass period. In the low altitude area (4100-4300 m), plant community included Caragana versicolor, R. macrophylla and Berberis temolaica, and Tibetan red deer mainly ate R. macrophylla, C. versicolor and Artemisia wellbyi. In higher altitude area (4300-4600 m), plant community consisted of Rhododendron nivale, Rhododendron fragariiflorum, and Sibiraea angustata, and Tibetan red deer mainly fed on S. daltoniana, Salix obscura, and Carex littledalei. At different altitudes, the dominant plant species were the main food of Tibetan red deer. It is suggested that the changes of plant community composition with altitude directly affected food composition of Tibetan red deer, indicating different food composition patterns with altitude gradients.

Can artificial ecological islands alter the biodiversity of macroinvertebrate? A case study in Fujin National Wetland Park, the Sanjiang Plain, China.

Many policies and studies globally have highlighted the pivotal role of wetland ecosystems regarding wetland biota and their ecological status. With the strengthening of wetland ecosystem management legislation and policy, wetland restoration should also consider increasing habitat diversity to improve biota. We explore whether the construction of artificial ecological islands can increase the diversity of and macroinvertebrates before assessing the effects of actively constructing islands via human intervention on wetland protection.We discuss changes in macroinvertebrate diversity (i) with and without islands, (ii) at different water-level gradients surrounding the islands, (ⅲ) on different island substrates, and (ⅳ) at different time scales. We used ANOVA, ANOSIM, and cluster analysis to test the differences.The macroinvertebrate communities had spatially heterogeneous distributions which changes over time due to both natural and anthropogenic stresses. The establishment of islands significantly increased the community composition and biodiversity of the macroinvertebrate. Water depth and substrate affect community composition of macrozoobenthos. The abundance and diversity of macroinvertebrates can influence the biodiversity of their predators (fish and waterbirds). Potentially, the construction of islands could provide some cobenefits for the conservation of wetland fauna. Synthesis and applications. Establishing artificial ecological islands in broad open-water areas and increasing water-level gradient and substrate diversity can increase microhabitat availability and habitat heterogeneity. These changes can adapt to different ecological niches of aquatic organisms, increase biodiversity, and have a positive effect on the ecological restoration of inland freshwater marshes and wetlands.

[Comparison on feeding habits of Cervus wallichii and sympatric ungulates and domestic animals in green grass period]. / 西藏马鹿与同域野生有蹄类、家畜草青期食性比较.

Tibetan red deer (Cervus wallichii) is an endemic species to China, which was once considered extinct in the wild. As there are several other wild ungulates and domestic animals with similar feeding habits within its habitat range, it's thus essential to study interspecific competition and co-existence between Tibetan red deer and other cohabiting ungulates in the highly unique environment of Qinghai-Tibet Plateau. Using microscopic analysis on fresh fecal samples collected in Sangri Tibetan Red Deer Nature Reserve from August to September in 2013 and 2014, the trophic niche width and overlap index were calculated on the basis of diet composition of C. wallichii, Cervus albirostris, Procapra picticaudata, Bos mutus and Capra hircas in green grass period. We analyzed and compared the overlap and differentiation of feeding habits between Tibetan red deer and other wild ungulates and domestic animals. The results showed that C. wallichii fed on similar edible plants with other species, but differed in proportion of different dietary components, with the main edible plants of C. wallichii being mostly the secondary edible plants to other species. Leontopodium pusillum was the common main edible plant for C. wallichii (percentage in animal recipes was 11.2%) and B. mutus (10.2%), Salix xizangensis was the common main edible plant of C. wallichii (9.6%) and C. albirostris (11.4%). At plant family level, Leguminosae was the common main edible plant family for C. wallichii (21.4%) and P. picticaudata (42.5%). Cyperaceae was the common main edible plant family for C. albirostris (49.2%), B. mutus (33.4%) and C. hircas (50.3%). Compositae was main edible plant family for C. wallichii (29.6%), as well as the secondary edible plant family for C. albirostris (7.6%), P. picticaudata (11.6%), B. mutus (17.3%) and C. hircas (14.1%). As the secondary edible plant family for C. wallichii (7.1%), Gramineae took up a lower proportion than that of the other ungulates (C. albirostris (13.6%), P. picticaudata (12.3%), B. mutus (11.5%) and C. hircas (16.0%)). Food overlap indices between C. wallichii and the other ungulates were all higher than 0.5, and the highest with B. mutus (0.65). The food diversity index (1.32), evenness index (0.37) and niche width index (15.79) of C. wallichii were all at high values. Compared with the results from 2007 to 2008, dietary composition of Tibetan red deer changed greatly as the proportion of Leguminosae increased while that of Cyperaceae decreased, resulting in improvement of food quality. In addition, there was greater competition of food resources between C. wallichii and domestic animals, which would further affect the distribution range and living space of C. wallichii.

Mitochondrial BNIP3 upregulation precedes endonuclease G translocation in hippocampal neuronal death following oxygen-glucose deprivation.

BACKGROUND: Caspase-independent apoptotic pathways are suggested as a mechanism for the delayed neuronal death following ischemic insult. However, the underlying signalling mechanisms are largely unknown. Recent studies imply the involvement of several mitochondrial proteins, including endonuclease G (EndoG) and Bcl-2/adenovirus E1B 19 kDa-interacting protein (BNIP3), in the pathway of non-neuronal cells. RESULTS: In this report, using western blot analysis and immunocytochemistry, we found that EndoG upregulates and translocates from mitochondria to nucleus in a time-dependent manner in cultured hippocampal neurons following oxygen-glucose deprivation (OGD). Moreover, the translocation of EndoG occurs hours before the observable nuclear pyknosis. Importantly, the mitochondrial upregulation of BNIP3 precedes the translocation of EndoG. Forced expression of BNIP3 increases the nuclear translocation of EndoG and neuronal death while knockdown of BNIP3 decreases the OGD-induced nuclear translocation of EndoG and neuronal death. CONCLUSION: These results suggest that BNIP3 and EndoG play important roles in hippocampal neuronal apoptosis following ischemia, and mitochondrial BNIP3 is a signal protein upstream of EndoG that can induce neuronal death.

[Genomic in situ hybridization in intergeneric hybrids between Raphanus sativus and Brassica oleracea].

Genomic in situ hybridization (GISH) was applied to study the meiosis of F1 plants from intergeneric hybrids between radish (Raphanus sativus, 2n=18, RR) and cabbage (Brassica oleracea, 2n=18, CC). The result showed that its somatic cells had the expected chromosomes, RC, 2n=18; but the pollen mother cells (PMCs) were different. There were three main kinds of PMCs. The first one was RC (2n=18), and the mean chromosome pairing pattern was 14.87I+1.20II+0.04III+0.06IV on Diakinesis. GISH indicated that most bivalents resulted from chromosome pairing between radish and cabbage, and the nine chromosomes of R-genome were separated mostly in the ratio 5/4 and 6/3 at Anaphase, so the chromosome number and components in gametes were not in equilibrium and the gametes were sterile. The second was RRCC (2n=36) with normal chromosome pairing and separation, producing unreduced gametes. And the third was nullisomic of RRCC in PMCs (2n<36) GISH showed that some radish chromosomes were lost in those PMCs, and its gametes had nine cabbage chromosomes and partial radish chromosomes. The mechanism of this chromosome reduplication was discussed in this paper.

The complete mitochondrial genome sequence of Plotosus japonicus (Siluriformes: Plotosidae) and phylogenetic studies of Siluriformes.

In this study, we first determined and described the complete mitogenome sequence of Plotosus japonicus, which is a kind of marine fish widely distributed in Northwest Pacific. The complete mitogenome sequence is 16 472 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region (CR) and a light-strand replication origin (OL). The overall base composition is 31.9% A, 24.7% T, 27.7% C, 15.7% G, with a slight AT bias (56.6%), similar to other vertebrate mitochondrial genomes. All the protein-coding genes use the initiation codon ATG except COI uses GTG. Most of them have TAA or TAG as the stop codon, while COII and ND4 use AGA, COIII and Cytb use an incomplete stop codon TA or T. Maximum Likelihood (ML) tree and Bayesian analyses based on concatenated nucleotide sequences of 12 mitochondrial protein-coding genes were constructed and both yielded identical topologies. These results are expected to provide useful molecular data for species identification and further phylogenetic studies of Siluriformes.

The complete mitochondrial genome of Daurian ground squirrel, Spermophilus dauricus.

The mitochondrial genome sequence of Daurian ground squirrel, Spermophilus dauricus, is determined and described for the first time in this study. The genome was a total of 16 512 bp in length and had a base composition of A (32.08%), G (12.53%), C (24.35%), and T (31.04%), indicating that the percentage of A + T (63.12%) is higher than G + C (36.88%). Similar to those reported from other animal mitochondrial genomes, it possessed a typically conserved structure, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 1 control region (D-loop). Most of these genes were found to locate on the H-strand except for the ND6 gene and 8 tRNA genes. The phylogenetic analysis showed Spermophilus dauricus formed the sister group to the Pteromyini tribe. This mitochondrial genome sequence would supply useful genetic resources to uncover Sciuridae family evolution.

The complete mitochondrial genome of Sika deer Cervus nippon hortulorum (Artiodactyla: Cervidae) and phylogenetic studies.

Sika deer (Cervus nippon Temminck 1836) are classified in the order Artiodactyla, family Cervidae, subfamily Cervinae. At present, the phylogenetic studies of C. nippon are problematic. In this study, we first determined and described the complete mitochondrial sequence of the wild C. nippon hortulorum. The complete mitogenome sequence is 16 566 bp in length, including 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region (CR) and a light-strand replication origin (OL). The overall base composition was 33.4% A, 28.6% T, 24.5% C, 13.5% G, with a 62.0% AT bias. The 13 protein-coding genes encode 3782 amino acids in total. To further validate the new determined sequences and phylogeny of Sika deer, phylogenetic trees involving 15 most closely related species available in GenBank database were constructed. These results are expected to provide useful molecular data for deer species identification and further phylogenetic studies of Artiodactyla.

Mitochondrial DNA distinction of northeastern China roe deer, Siberian roe deer, and European roe deer, to clarify the taxonomic status of northeastern China roe deer.

Partial sequences of the mitochondrial control region of northeastern China roe deer were analyzed to determine the degree of genetic diversity. Fourteen haplotypes were observed. The haplotype diversity was high (h = 0.872), nucleotide diversity was medium (p ( i ) = 0.0108), and the average Tamura-Nei nucleotide distance among them was 1.9%, indicating that genetic diversity of roe deer from northeastern China was relatively high and that the effective population size was large historically. To clarify the northeastern China roe deer's taxonomic status, these 14 haplotypes were compared with 31 haplotypes published in Genbank from Europe, Siberia, and Korea. The average genetic distance between haplogroups of northeastern China and European roe deer (5.8%) was more than twice that between northeastern China and Siberian roe deer (2.7%), indicating sufficient variation to consider roe deer of northeastern China and Siberia as a single species (Capreolus pygargus), distinct from European roe deer (Capreolus capreolus). This is the first presentation of mtDNA data for roe deer in northeastern China, which will be helpful in investigations of genetic diversity and clarifications of the taxonomic status of roe deer in the whole of China.