Detalhe da pesquisa
1.
Power-law behavior of transcriptional bursting regulated by enhancer-promoter communication.
Genome Res
; 34(1): 106-118, 2024 Feb 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-38171575
2.
Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics.
Nucleic Acids Res
; 51(1): 68-83, 2023 01 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36583343
3.
4D nucleome equation predicts gene expression controlled by long-range enhancer-promoter interaction.
PLoS Comput Biol
; 19(12): e1011722, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-38109463
4.
Balanced implicit Patankar-Euler methods for positive solutions of stochastic differential equations of biological regulatory systems.
J Chem Phys
; 160(6)2024 Feb 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-38353308
5.
Stochastic modeling of the mRNA life process: A generalized master equation.
Biophys J
; 122(20): 4023-4041, 2023 10 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-37653725
6.
TIDAL: Topology-Inferred Drug Addiction Learning.
J Chem Inf Model
; 63(5): 1472-1489, 2023 03 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-36826415
7.
Composite Patankar-Euler methods for positive simulations of stochastic differential equation models for biological regulatory systems.
J Chem Phys
; 159(2)2023 Jul 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-37428041
8.
Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas.
Brief Bioinform
; 21(3): 1080-1097, 2020 05 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-31329830
9.
Silent transcription intervals and translational bursting lead to diverse phenotypic switching.
Phys Chem Chem Phys
; 24(43): 26600-26608, 2022 Nov 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-36286225
10.
Markovian approaches to modeling intracellular reaction processes with molecular memory.
Proc Natl Acad Sci U S A
; 116(47): 23542-23550, 2019 11 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-31685609
11.
Queuing Models of Gene Expression: Analytical Distributions and Beyond.
Biophys J
; 119(8): 1606-1616, 2020 10 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-32966761
12.
Different effects of fast and slow input fluctuations on output in gene regulation.
Chaos
; 30(2): 023104, 2020 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-32113227
13.
Linear approximations of global behaviors in nonlinear systems with moderate or strong noise.
J Chem Phys
; 148(10): 104105, 2018 Mar 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-29544279
14.
Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression.
PLoS Comput Biol
; 12(5): e1004917, 2016 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-27153118
15.
A moment-convergence method for stochastic analysis of biochemical reaction networks.
J Chem Phys
; 144(19): 194109, 2016 May 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-27208938
16.
Decomposition and tunability of expression noise in the presence of coupled feedbacks.
Chaos
; 26(4): 043108, 2016 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27131487
17.
Dynamical analysis of mCAT2 gene models with CTN-RNA nuclear retention.
Phys Biol
; 12(1): 016010, 2015 Jan 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-25619276
18.
Post-transcriptional regulation tends to attenuate the mRNA noise and to increase the mRNA gain.
Phys Biol
; 12(5): 056002, 2015 Aug 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-26266661
19.
Fundamental principles of energy consumption for gene expression.
Chaos
; 25(12): 123101, 2015 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-26723140
20.
Promoter-mediated transcriptional dynamics.
Biophys J
; 106(2): 479-88, 2014 Jan 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-24461023