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1.
Microb Cell Fact ; 22(1): 89, 2023 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-37131175

RESUMO

BACKGROUND: Aromatic α-hydroxy ketones, such as S-2-hydroxypropiophenone (2-HPP), are highly valuable chiral building blocks useful for the synthesis of various pharmaceuticals and natural products. In the present study, enantioselective synthesis of 2-HPP was investigated by free and immobilized whole cells of Pseudomonas putida ATCC 12633 starting from readily-available aldehyde substrates. Whole resting cells of P. putida, previously grown in a culture medium containing ammonium mandelate, are a source of native benzoylformate decarboxylase (BFD) activity. BFD produced by induced P. putida resting cells is a highly active biocatalyst without any further treatment in comparison with partially purified enzyme preparations. These cells can convert benzaldehyde and acetaldehyde into the acyloin compound 2-HPP by BFD-catalyzed enantioselective cross-coupling reaction. RESULTS: The reaction was carried out in the presence of exogenous benzaldehyde (20 mM) and acetaldehyde (600 mM) as substrates in 6 mL of 200 mM phosphate buffer (pH 7) for 3 h. The optimal biomass concentration was assessed to be 0.006 g dry cell weight (DCW) mL- 1. 2-HPP titer, yield and productivity using the free cells were 1.2 g L- 1, 0.56 g 2-HPP/g benzaldehyde (0.4 mol 2-HPP/mol benzaldehyde), 0.067 g 2-HPP g- 1 DCW h- 1, respectively, under optimized biotransformation conditions (30 °C, 200 rpm). Calcium alginate (CA)-polyvinyl alcohol (PVA)-boric acid (BA)-beads were used for cell entrapment. Encapsulated whole-cells were successfully employed in four consecutive cycles for 2-HPP production under aerobic conditions without any noticeable beads degradation. Moreover, there was no production of benzyl alcohol as an unwanted by-product. CONCLUSIONS: Bioconversion by whole P. putida resting cells is an efficient strategy for the production of 2-HPP and other α-hydroxyketones.


Assuntos
Carboxiliases , Hidroxipropiofenona , Pseudomonas putida , Pseudomonas putida/metabolismo , Carboxiliases/metabolismo , Benzaldeídos/metabolismo , Estereoisomerismo , Cetonas/metabolismo , Acetaldeído/química , Acetaldeído/metabolismo
2.
Sensors (Basel) ; 23(21)2023 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-37960381

RESUMO

A wireless sensor network (WSN) is a network that monitors the physical environment using small and energy-efficient sensor devices. The wide application of WSNs has caused them to be used in critical applications that require a quick response, even at the cost of higher consumption. In recent years, Fast Reroute (FRR) technology has been developed, which accelerates network recovery after line or node failure. This technology plays an important role in connection recovery and data recovery, which helps speed up detection and redirect traffic. In our work, we created a new modification of the Ad hoc On-Demand Distance Vector (AODV) routing protocol, where we added the fast detection of link failure used in the FRR area. This modification rapidly increased connection recovery time and was tested in the OMNET++ simulation environment. The modification was implemented based on an additional RFC 5880 Bidirectional Forwarding Detection (BFD) module, which speeds up failure detection by sending quick "Hello" messages.

3.
Mol Phylogenet Evol ; 111: 44-55, 2017 06.
Artigo em Inglês | MEDLINE | ID: mdl-28323053

RESUMO

The sinipercids are freshwater fishes endemic to East Asia, mainly in China. Phylogenetic studies on the sinipercids have made great progress in the last decades, but interspecific relationships and evolutionary history of the sinipercids remain unresolved. Lack of distinctive morphological characters leads to problems in validating of some species, such as Siniperca loona. Moreover, genetic data are needed to delimitate species pairs with explicit hypothesis testing, such as in S. chuatsi vs. S. kneri and Coreoperca whiteheadi vs. C. liui. Here we reconstructed phylogeny of the sinipercids with an unprecedented scale of data, 16,943 loci of single-copy coding sequence data from nine sinipercid species, eight putative sister taxa and two outgroups. Targeted sequences were collected using gene enrichment and Illumina sequencing, yielding thousands of protein coding sequences and single nucleotide polymorphisms (SNPs) data. Maximum likelihood and coalescent species tree analyses resulted in identical and highly supported trees. We confirmed that the centrarchids are sister to the sinipercids. A monophyletic Sinipercidae with two genera, Siniperca and Coreoperca was also supported. Different from most previous studies, S. scherzeri was found as the most basal taxon to other species of Siniperca, which consists of two clades: a clade having S. roulei sister to S. chuatsi and S. kneri, and a clade consisting S. loona sister to S. obscura and S. undulata. We found that both S. loona and C. liui are valid species using Bayes factor delimitation (BFD∗) based on SNPs data. Species delimitation also provided decisive support for S. chuatsi and S. kneri being two distinct species. We calibrated a chronogram of the sinipercids based on 100 loci and three fossil calibration points using BEAST, and reconstructed ancestral ranges of the sinipercids using Lagrange Analysis (DEC model) and Statistical Dispersal-Vicariance Analysis (S-DIVA) implemented in RASP. Divergence time estimates and ancestral habitat reconstruction suggested a wide-ranging distribution of the common ancestor of the sinipercids in southern China at 53.1 million years ago (CI: 30.4-85.8Ma). The calibrated time tree is consistent with historical climate changes and geological events that might have shaped the current distribution of the sinipercids.


Assuntos
Núcleo Celular/genética , Fases de Leitura Aberta/genética , Perciformes/classificação , Perciformes/genética , Filogenia , Animais , Calibragem , Funções Verossimilhança , Filogeografia , Polimorfismo de Nucleotídeo Único/genética , Análise de Sequência de DNA , Especificidade da Espécie , Fatores de Tempo
4.
Toxicol Appl Pharmacol ; 295: 56-67, 2016 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-26876618

RESUMO

Benzofuroxan is an interesting ring system, which has shown a wide spectrum of biological responses against tumor cell lines. We investigated, herein, the antitumor effects of benzofuroxan derivatives (BFDs) in vitro and in a melanoma mouse model. Cytotoxic effects of twenty-two BFDs were determined by MTT assay. Effects of BFD-22 in apoptosis and cell proliferation were evaluated using Annexin V-FITC/PI and CFSE staining. In addition, the effects in the cell cycle were assessed. Flow cytometry, western blot, and fluorescence microscopy analysis were employed to investigate the apoptosis-related proteins and the BRAF signaling. Cell motility was also exploited through cell invasion and migration assays. Molecular docking approach was performed in order to verify the BFD-22 binding mode into the ATP catalytic site of BRAF kinase. Moreover, the BFD-22 antitumor effects were evaluated in a melanoma murine model using B16F10. BFD-22 was identified as a potential hit against melanoma cells. BFD-22 induced apoptosis and inhibited cell proliferation of B16F10 cells. BFD-22 has suppressed, indeed, the migratory and invasive behavior of B16F10 cells. Cyclin D1 and CDK4 expression were reduced leading to cell cycle arrest at G0/G1 phase. Of note, phosphorylation of BRAF at Ser338 was strongly down-regulated by BFD-22 in B16F10 cells. The accommodation/orientation into the binding site of BRAF was similar of BAY43-9006 (co-crystallized inhibitor of BRAF, sorafenib). Importantly, BFD-22 presented in vivo antimetastatic effects and showed better therapeutic efficacy than sorafenib and taxol. BFD-22 can be considered as a new lead compound and, then, can be helpful for the designing of novel drug candidates to treat melanoma.


Assuntos
Sobrevivência Celular/efeitos dos fármacos , Hidrazinas/farmacologia , Melanoma Experimental/imunologia , Oxidiazóis/farmacologia , Proteínas Proto-Oncogênicas B-raf/antagonistas & inibidores , Animais , Apoptose/efeitos dos fármacos , Benzoxazóis , Western Blotting , Linhagem Celular Tumoral , Movimento Celular/efeitos dos fármacos , Proliferação de Células/efeitos dos fármacos , Ciclina D1/biossíntese , Quinase 4 Dependente de Ciclina/biossíntese , Citometria de Fluxo , Camundongos , Microscopia de Fluorescência , Simulação de Acoplamento Molecular
5.
Toxicol Appl Pharmacol ; 274(2): 249-62, 2014 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-24239652

RESUMO

Humic acid (HA) has been implicated as one of the etiological factors in the peripheral vasculopathy of blackfoot disease (BFD) in Taiwan. However, the underlying pathophysiological mechanisms of BFD are not well defined. In this study, we used an in vitro and in vivo model, in which HA (25-200µg/mL) activated macrophages to produce pro-inflammatory molecules by activating their transcriptional factors. HA exposure induced NO and PGE2 production followed by induction of iNOS and COX-2 through NF-κB/AP-1 transactivation in macrophages. In addition, the production of TNF-α and IL-1ß was significantly increased by HA. Moreover, HA-induced iNOS and COX-2 expression were down-regulated by the NF-κB and AP-1 inhibitors pyrrolidine dithiocarbamate (PDTC) and Tanshinone, respectively. Furthermore, generations of ROS and nitrotyrosine, as well as activation of the AKT and MAPKs signaling cascades were observed after HA exposure. Specifically, HA-induced NF-κB activation was mediated by ROS and AKT, and that HA-induced AP-1 activation was mediated by JNK and ERK. Notably, HA-mediated AKT, JNK, and ERK activation was ROS-independent. The inflammatory potential of HA was correlated with increased expression of HO-1 and Nrf2. Furthermore, an in vivo study confirms that mice exposed to HA, the serum levels of TNF-α and IL-1ß was significantly increased in a dose-dependent manner. This report marks the first confirmation that environmental exposure of HA induces inflammation in macrophages, which may be one of the main causes of early atherogenesis in blackfoot disease.


Assuntos
Aterosclerose/patologia , Água Potável/química , Substâncias Húmicas/efeitos adversos , Inflamação/induzido quimicamente , NF-kappa B/metabolismo , Espécies Reativas de Oxigênio/metabolismo , Fator de Transcrição AP-1/metabolismo , Acetilcisteína/farmacologia , Animais , Antioxidantes/farmacologia , Aterosclerose/etiologia , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Ciclo-Oxigenase 2/genética , Ciclo-Oxigenase 2/metabolismo , Dinoprostona/sangue , Feminino , Regulação da Expressão Gênica , Heme Oxigenase-1/genética , Heme Oxigenase-1/metabolismo , Substâncias Húmicas/análise , Inflamação/patologia , Interleucina-1beta/metabolismo , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Camundongos , Fator 2 Relacionado a NF-E2/genética , Fator 2 Relacionado a NF-E2/metabolismo , NF-kappa B/genética , Óxido Nítrico/sangue , Óxido Nítrico Sintase Tipo II/genética , Óxido Nítrico Sintase Tipo II/metabolismo , Estresse Oxidativo/efeitos dos fármacos , Ratos , Transdução de Sinais , Taiwan , Fator de Transcrição AP-1/genética , Fator de Necrose Tumoral alfa/metabolismo
6.
Tetrahedron Lett ; 55(30): 4141-4145, 2014 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-25045189

RESUMO

Discovery of renewable monomer feedstocks for fabrication of polymeric demand is critical in achieving sustainable materials. In the present work we have synthesized bisfuran diol (BFD) monomer from furfural, over four steps. BFD was examined via X-ray crystallography to understand the molecular arrangement in space, hydrogen bonding and packing of the molecules. This data was further used to compare BFD with structurally related Bisphenol A (BPA), and its known derivatives to predict the potential estrogenic or anti-estrogenic activities in BFD. Further, BFD was reacted with succinic acid to generate polyester material, bisfuran polyester (BFPE-1). MALDI characterization of BFPE-1 indicates low molecular weight polyester and thermal analysis reveals amorphous nature of the material.

7.
Sci Rep ; 14(1): 13400, 2024 06 11.
Artigo em Inglês | MEDLINE | ID: mdl-38862596

RESUMO

The intended research aims to explore the convection phenomena of a hybrid nanofluid composed of gold and silver nanoparticles. This research is novel and significant because there is a lack of existing studies on the flow behavior of hybrid nanoparticles with important physical properties of blood base fluids, especially in the case of sidewall ruptured dilated arteries. The implementation of combined nanoparticles rather than unadulterated nanoparticles is one of the most crucial elements in boosting the thermal conduction of fluids. The research methodology encompasses the utilization of advanced bio-fluid dynamics software for simulating the flow of the nanofluid. The physical context elucidates the governing equations of momentum, mass, momentum, and energy in terms of partial differential equations. The results are displayed in both tabular and graphical forms to demonstrate the numerical and graphical solutions. The effect of physical parameters on velocity distribution is illustrated through graphs. Furthermore, the study's findings are unique and original, and these computational discoveries have not been published by any researcher before. The finding implies that utilizing hybrid nanoparticles as drug carriers holds great promise in mitigating the effects of blood flow, potentially enhancing drug delivery, and minimizing its impact on the body.


Assuntos
Hemodinâmica , Nanopartículas Metálicas , Humanos , Nanopartículas Metálicas/química , Ouro/química , Simulação por Computador , Artérias , Prata/química , Nanopartículas/química , Modelos Cardiovasculares , Hidrodinâmica
8.
Environ Sci Pollut Res Int ; 31(15): 22339-22361, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38433174

RESUMO

Blast furnace dust (BFD) is the solid powder and particulate matter produced by dust removal process in ironmaking industry. The element composition of BFD is complex, and a direct return to sintering will lead to heavy metal enrichment and blast furnace lining corrosion. In recent years, the application of BFD in wastewater treatment has attracted widespread attention. Based on the mechanisms of action of BFD in wastewater, this paper discusses in detail the application of BFD in iron-carbon micro-electrolysis, biological enhancement, adsorption, flocculation, and Fenton/Fenton-like reactions. Iron oxides and carbon in BFD are key substances. Thus, BFD has great potential as a raw material in wastewater treatment, and the waste utilization of BFD can be realized. However, the difference in elements and composition of BFD limits its large-scale application. We can classify BFD according to different proportions of elements. In the future, it is necessary to focus on the service life of BFD in water and whether it shall bring secondary pollution to water.


Assuntos
Poeira , Águas Residuárias , Ferro , Água , Carbono
9.
Metab Eng ; 20: 109-20, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24126081

RESUMO

1,2,4-butanetriol (butanetriol) is a useful precursor for the synthesis of the energetic material butanetriol trinitrate and several pharmaceutical compounds. Bacterial synthesis of butanetriol from xylose or arabinose takes place in a pathway that requires four enzymes. To produce butanetriol in plants by expressing bacterial enzymes, we cloned native bacterial or codon optimized synthetic genes under different promoters into a binary vector and stably transformed Arabidopsis plants. Transgenic lines expressing introduced genes were analyzed for the production of butanetriol using gas chromatography coupled to mass spectrometry (GC-MS). Soil-grown transgenic plants expressing these genes produced up to 20 µg/g of butanetriol. To test if an exogenous supply of pentose sugar precursors would enhance the butanetriol level, transgenic plants were grown in a medium supplemented with either xylose or arabinose and the amount of butanetriol was quantified. Plants expressing synthetic genes in the arabinose pathway showed up to a forty-fold increase in butanetriol levels after arabinose was added to the medium. Transgenic plants expressing either bacterial or synthetic xylose pathways, or the arabinose pathway showed toxicity symptoms when xylose or arabinose was added to the medium, suggesting that a by-product in the pathway or butanetriol affected plant growth. Furthermore, the metabolite profile of plants expressing arabinose and xylose pathways was altered. Our results demonstrate that bacterial pathways that produce butanetriol can be engineered into plants to produce this chemical. This proof-of-concept study for phytoproduction of butanetriol paves the way to further manipulate metabolic pathways in plants to enhance the level of butanetriol production.


Assuntos
Arabidopsis , Proteínas de Bactérias , Butanóis/metabolismo , Genes Bacterianos , Engenharia Metabólica , Plantas Geneticamente Modificadas , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Plantas Geneticamente Modificadas/genética , Plantas Geneticamente Modificadas/metabolismo
10.
Chirality ; 25(7): 415-21, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23728901

RESUMO

In this study, magnetic nanoparticles (Fe3 O4 , magnetite) with immobilized metal affinity ligands (MSS) were prepared and characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), fourier transform infrared spectroscopy (FTIR), and vibrating-sample magnetometer (VSM) methods for purification and immobilization of the histidine-tagged recombinant benzoylformate decarboxylase (BFD). The MSS support was shown to be eligible for selective binding of HIS-tagged BFD by SDS-page analysis. Loading capacity of the MSS support was determined as 43.6 ± 1.1 mg/g. The regeneration ability for protein binding was also studied. An immobilized BFD was tested to catalyze benzoin condensation and representative cross acyloin reaction. Conversion and enantiomeric excess values were comparable with that of free enzyme catalyzed reactions.


Assuntos
Carboxiliases/química , Carboxiliases/metabolismo , Enzimas Imobilizadas/química , Enzimas Imobilizadas/metabolismo , Nanopartículas de Magnetita/química , Benzoína/química , Cobre/química , Dióxido de Silício/química
11.
Chemosphere ; 327: 138416, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36996917

RESUMO

In this study, a novel electrocoagulation electrode, based on blast furnace dust (BFD) from steelworks waste, was prepared for indigo wastewater treatment, and the performance was compared with different ratios of Fe-C composite electrodes. The BFD electrode exhibited great electrochemical performance and removal effect. The presence of Fe-C micro-electrolysis in the electrocoagulation system of the BFD electrode was demonstrated by FT-IR, Raman, ESR, and quenching experiments. Density Functional Theory (DFT) calculations further demonstrated that the iron-carbon ratio could influence the degree of O-O breaking and enhance ·OH generation. Finally, the BFD electrode's operating parameters were perfected, and the COD removal and decolorization could reach 75.7% and 95.8% within 60 min, respectively. Fe-C composite electrodes reduce energy consumption compared with the traditional Fe/Al electrode and have a lower production cost, which provides a potential way to recycle and reuse the resources of solid waste in steelworks, the concept of "waste controlled by waste" is realized.


Assuntos
Índigo Carmim , Eliminação de Resíduos Líquidos , Águas Residuárias , Poluentes Químicos da Água , Eletrocoagulação , Eletrodos , Eletrólise , Concentração de Íons de Hidrogênio , Índigo Carmim/análise , Índigo Carmim/química , Resíduos Industriais/análise , Espectroscopia de Infravermelho com Transformada de Fourier , Purificação da Água , Poluentes Químicos da Água/análise , Poluentes Químicos da Água/química
12.
J Integr Bioinform ; 20(2)2023 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-37497772

RESUMO

Transmembrane transport proteins (transporters) play a crucial role in the fundamental cellular processes of all organisms by facilitating the transport of hydrophilic substrates across hydrophobic membranes. Despite the availability of numerous membrane protein sequences, their structures and functions remain largely elusive. Recently, natural language processing (NLP) techniques have shown promise in the analysis of protein sequences. Bidirectional Encoder Representations from Transformers (BERT) is an NLP technique adapted for proteins to learn contextual embeddings of individual amino acids within a protein sequence. Our previous strategy, TooT-BERT-T, differentiated transporters from non-transporters by employing a logistic regression classifier with fine-tuned representations from ProtBERT-BFD. In this study, we expand upon this approach by utilizing representations from ProtBERT, ProtBERT-BFD, and MembraneBERT in combination with classical classifiers. Additionally, we introduce TooT-BERT-CNN-T, a novel method that fine-tunes ProtBERT-BFD and discriminates transporters using a Convolutional Neural Network (CNN). Our experimental results reveal that CNN surpasses traditional classifiers in discriminating transporters from non-transporters, achieving an MCC of 0.89 and an accuracy of 95.1 % on the independent test set. This represents an improvement of 0.03 and 1.11 percentage points compared to TooT-BERT-T, respectively.


Assuntos
Proteínas de Membrana , Proteínas de Membrana Transportadoras , Sequência de Aminoácidos , Redes Neurais de Computação
13.
Environ Pollut ; 337: 122574, 2023 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-37722474

RESUMO

Polyvinyl alcohol (PVA) has been widely used as a water-soluble plastic in laundry and dish detergent pods, yet wastewater contaminated with PVA is too difficult to be treated due to its high salinity and foaming. Here, we fabricated blast furnace dust (BFD) particle electrodes, and developed a three-dimensional electrocatalytic system (3DEC) to treat saline PVA wastewater. The optimum preparation condition for BFD particle electrode was iron carbon ratio of 2:1 doping with TiO2. The optimal parameters of 3DECs for PVA wastewater degradation were thoroughly investigated, with current density of 30 mA/cm2, electrode distance of 30 mm, pH value of 7.0, and particle electrode filling rate of 50%. PVA wastewater degradation rate could reach 89.33% within 120 min. The underlying mechanism of iron-carbon micro electrolysis and electrocatalytic system was further studied. PVA wastewater was degraded by direct catalytic oxidation from electrodes. A scavenger experiment showed that free radicals consisting of •OH and HClO mainly contributed to the PVA wastewater degradation. HClO was generated by Cl- at the electrocatalysis and micro electrolysis of particles. In addition, the lifetime of the prepared BFD particle electrode was 120 h, which exhibited electrochemical stability. These findings highlight that the 3DECs coupled with BFD particle electrode is a promising electrocatalysis process for the removal of PVA wastewater.


Assuntos
Águas Residuárias , Poluentes Químicos da Água , Álcool de Polivinil , Poluentes Químicos da Água/análise , Oxirredução , Carbono , Eletrodos , Ferro
14.
Ecol Evol ; 11(24): 18615-18632, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-35003697

RESUMO

Species delimitation among closely related species is challenging because traditional phenotype-based approaches, for example, using morphology, ecological, or chemical characteristics, may not coincide with natural groupings. With the advent of high-throughput sequencing, it has become increasingly cost-effective to acquire genome-scale data which can resolve previously ambiguous species boundaries. As the availability of genome-scale data has increased, numerous species delimitation analyses, such as BPP and SNAPP+Bayes factor delimitation (BFD*), have been developed to delimit species boundaries. However, even empirical molecular species delimitation approaches can be biased by confounding evolutionary factors, for example, hybridization/introgression and incomplete lineage sorting, and computational limitations. Here, we investigate species boundaries and the potential for micro-endemism in a lineage of lichen-forming fungi, Niebla Rundel & Bowler, in the family Ramalinaceae by analyzing single-locus and genome-scale data consisting of (a) single-locus species delimitation analysis using ASAP, (b) maximum likelihood-based phylogenetic tree inference, (c) genome-scale species delimitation models, e.g., BPP and SNAPP+BFD, and (d) species validation using the genealogical divergence index (gdi). We specifically use these methods to cross-validate results between genome-scale and single-locus datasets, differently sampled subsets of genomic data and to control for population-level genetic divergence. Our species delimitation models tend to support more speciose groupings that were inconsistent with traditional taxonomy, supporting a hypothesis of micro-endemism, which may include morphologically cryptic species. However, the models did not converge on robust, consistent species delimitations. While the results of our analysis are somewhat ambiguous in terms of species boundaries, they provide a valuable perspective on how to use these empirical species delimitation methods in a nonmodel system. This study thus highlights the challenges inherent in delimiting species, particularly in groups such as Niebla, with complex, relatively recent phylogeographic histories.

15.
PeerJ ; 5: e3724, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28875076

RESUMO

While methods for genetic species delimitation have noticeably improved in the last decade, this remains a work in progress. Ideally, model based approaches should be applied and considered jointly with other lines of evidence, primarily morphology and geography, in an integrative taxonomy framework. Deep phylogeographic divergences have been reported for several species of Carlia skinks, but only for some eastern taxa have species boundaries been formally tested. The present study does this and revises the taxonomy for two species from northern Australia, Carlia johnstonei and C. triacantha. We introduce an approach that is based on the recently published method StarBEAST2, which uses multilocus data to explore the support for alternative species delimitation hypotheses using Bayes Factors (BFD). We apply this method, jointly with two other multispecies coalescent methods, using an extensive (from 2,163 exons) data set along with measures of 11 morphological characters. We use this integrated approach to evaluate two new candidate species previously revealed in phylogeographic analyses of rainbow skinks (genus Carlia) in Western Australia. The results based on BFD StarBEAST2, BFD* SNAPP and BPP genetic delimitation, together with morphology, support each of the four recently identified Carlia lineages as separate species. The BFD StarBEAST2 approach yielded results highly congruent with those from BFD* SNAPP and BPP. This supports use of the robust multilocus multispecies coalescent StarBEAST2 method for species delimitation, which does not require a priori resolved species or gene trees. Compared to the situation in C. triacantha, morphological divergence was greater between the two lineages within Kimberley endemic C. johnstonei, which also had deeper divergent histories. This congruence supports recognition of two species within C. johnstonei. Nevertheless, the combined evidence also supports recognition of two taxa within the more widespread C. triacantha. With this work, we describe two new species, Carlia insularis sp. nov and Carlia isostriacantha sp. nov. in the northwest of Australia. This contributes to increasing recognition that this region of tropical Australia has a rich and unique fauna.

16.
J Proteomics ; 124: 39-49, 2015 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-25913300

RESUMO

The pathogenicity of Yersinia enterocolitica biovar 1A strains is controversial as these lack most of the known virulence factors. Acquisition of iron and presence of well-regulated iron homeostasis in bacteria represents an important virulence trait. Differential abundance of proteins was examined under iron-rich and iron-poor conditions in a clinical Y. enterocolitica biovar 1A strain IP27407. Whole cell protein profiles were analysed by 2D gel electrophoresis (2D-GE). Following statistical and MALDI-TOF MS analyses, 28 differentially abundant proteins were identified. Significant iron-responsive changes were observed in the proteins involved in iron acquisition or storage namely, hemin receptor (HemR), periplasmic Fe(2+) transport protein (Tpd), periplasmic chelated iron-binding protein (YfeA) and bacterioferritin (Bfr). Quantitative real-time PCR (qRT-PCR) of eight mRNA transcripts revalidated the differential protein abundance. In silico analysis of iron homeostasis mediated by the bacterioferritin and bacterioferritin-associated ferredoxin (Bfr-Bfd) complex suggested two pathways for the release of reserve iron which might be operating under conditions of different iron availability. The study, for the first time, showed the existence of highly competent iron homeostasis mechanisms in Y. enterocolitica biovar 1A and identified the key proteins involved thereof. Such mechanisms might have implications for the pathogenicity of Y. enterocolitica biovar 1A strains. BIOLOGICAL SIGNIFICANCE: Although, a few studies have identified the differentially abundant bacterial proteins in response to iron starvation, little information is available in this regard for Y. enterocolitica (especially, the biovar 1A strains). In the present study, differential abundance of several proteins was identified under iron-rich and iron-poor conditions by 2D-GE and MALDI-TOF/MS analysis. These included proteins which may not only be directly implicated in iron acquisition or storage but also play crucial role in cellular metabolism. Given the absence of most known virulence factors in Y. enterocolitica biovar 1A strains, demonstration of well-regulated mechanisms for efficient iron homeostasis constitutes an important observation. The proteins, as identified in the present study, provide useful insights to further unravel the potential pathogenicity of the biovar 1A strains.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Homeostase/fisiologia , Ferro/metabolismo , Proteoma/metabolismo , Yersinia enterocolitica/metabolismo , Sequência de Aminoácidos , Regulação Bacteriana da Expressão Gênica/fisiologia , Dados de Sequência Molecular , Especificidade da Espécie , Yersinia enterocolitica/classificação
17.
Biomed Pharmacother ; 68(8): 1015-22, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25312819

RESUMO

Lung cancer is the most frequent and lethal human cancer in the world. Because is still an unsolved health issue, new compounds or therapeutic strategies are urgently needed. Furoxans are presented as potentials candidates for lung cancer treatment. Accordingly, we evaluated the efficacy of a benzofuroxan derivative, BFD-22, alone and combined with sorafenib against NCI-H460 cell line. We showed that BFD-22 has cytotoxic effects on the NCI-H460 cells. Importantly, the Combination Index (CI) evaluation revels that BFD-22 combined with sorafenib has a stronger cytotoxic effect. In addition, the combination induces apoptosis through extrinsic pathway, leading to TRAIL-R1/DR4-triggered apoptosis. Furthermore, BFD-22 combined with sorafenib increases ROS production and simultaneously reduces perlecan expression in the NCI-H460 cells. In accordance, tumor cells were arrested in the S-phase, and these anti-proliferative effects also inhibit cell migration. This is the first study reporting an advantage of BFD-22 combined with sorafenib as a new therapeutic strategy in the fight against lung cancer.


Assuntos
Antineoplásicos/administração & dosagem , Benzoxazóis/administração & dosagem , Carcinoma Pulmonar de Células não Pequenas , Neoplasias Pulmonares , Niacinamida/análogos & derivados , Compostos de Fenilureia/administração & dosagem , Carcinoma Pulmonar de Células não Pequenas/tratamento farmacológico , Sobrevivência Celular/efeitos dos fármacos , Sobrevivência Celular/fisiologia , Relação Dose-Resposta a Droga , Sinergismo Farmacológico , Quimioterapia Combinada , Humanos , Neoplasias Pulmonares/tratamento farmacológico , Niacinamida/administração & dosagem , Sorafenibe
18.
N Biotechnol ; 31(1): 120-32, 2014 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-23845285

RESUMO

The yeast Pichia pastoris has emerged as one of the most promising yeast cell factories for the production of heterologous proteins. The readily available genetic tools and the ease of high-cell density cultivations using methanol or glycerol/methanol mixtures are among the key factors for this development. Previous studies have shown that the use of mixed feeds of glycerol and methanol seem to alleviate the metabolic burden derived from protein production, allowing for higher specific and volumetric process productivities. However, initial studies of glycerol/methanol co-metabolism in P. pastoris by classical metabolic flux analyses using (13)C-derived Metabolic Flux Ratio (METAFoR) constraints were hampered by the reduced labelling information obtained when using C3:C1 substrate mixtures in relation to the conventional C6 substrate, that is, glucose. In this study, carbon flux distributions through the central metabolic pathways in glycerol/methanol co-assimilation conditions have been further characterised using biosynthetically directed fractional (13)C labelling. In particular, metabolic flux distributions were obtained under 3 different glycerol/methanol ratios and growth rates by iterative fitting of NMR-derived (13)C-labelling data from proteinogenic amino acids using the software tool (13)CFlux2. Specifically, cells were grown aerobically in chemostat cultures fed with 80:20, 60:40 and 40:60 (w:w) glycerol/methanol mixtures at two dilutions rates (0.05 hour(-1) and 0.16 hour(-1)), allowing to obtain additional data (biomass composition and extracellular fluxes) to complement pre-existing datasets. The performed (13)C-MFA reveals a significant redistribution of carbon fluxes in the central carbon metabolism as a result of the shift in the dilution rate, while the ratio of carbon sources has a lower impact on carbon flux distribution in cells growing at the same dilution rate. At low growth rate, the percentage of methanol directly dissimilated to CO2 ranges between 50% and 70%. At high growth rate the methanol is completely dissimilated to CO2 by the direct pathway, in the two conditions of highest methanol content.


Assuntos
Glicerol/farmacologia , Metanol/farmacologia , Pichia/metabolismo , Solventes/farmacologia , Isótopos de Carbono , Glucose , Espectroscopia de Ressonância Magnética , Pichia/crescimento & desenvolvimento , Proteínas Recombinantes
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