SARS-CoV-2 Infection in Beaver Farm, Mongolia, 2021.

We report an outbreak of COVID-19 in a beaver farm in Mongolia in 2021. Genomic characterization revealed a unique combination of mutations in the SARS-CoV-2 of the infected beavers. Based on these findings, increased surveillance of farmed beavers should be encouraged.

Comparison of trace elements in tissue of beaver (Castor canadensis) and local vegetation from a rural region of southern Ontario, Canada.

Beavers have been analyzed in several studies examining trace elements (TEs) in wildlife; however, most of these studies were undertaken in areas with known environmental pollutants. To understand and quantify natural enrichments of TEs in beaver tissue, samples of kidney, liver, muscle from 28 animals were compared with bark from 40 species of trees and shrubs, from the same, uncontaminated watershed. Pearson correlation and factor analysis show that conservative, lithophile elements such as Al, Ga, Th, and Y, all surrogates for mineral dust particles, explain 61% of the variation in the bark data. In contrast, Cd, Co, Cu, Mn, Mo, Ni, Rb, Se, Sr, and Tl in bark are independent of Al, and therefore most likely occur in non-mineral forms. Comparing tissue concentrations of beaver and bark, the organs are enriched in micronutrients such as Cu, Fe, Mo, Se, and Zn, but also non-essential, benign elements such as Cs and Rb, and potentially toxic elements such as Cd and Tl. Thus, the elements most enriched in beaver organs are those that apparently occur in biological form in the plant tissue. The elements enriched in these animals, relative to bark, appear to offer the most promise for monitoring environmental contamination by TEs using beavers. The majority of TEs of environmental relevance are most abundant in beaver kidney. However, monitoring studies must consider the variation in TE concentrations in beaver tissue, including those due to sex and age. Also, due consideration must be given to background concentrations of TEs in the vegetation composing the diet of the animals. The natural enrichment in the case of elements such as Cd, in beaver tissue relative to bark, is profound. These data establish critical baseline values for TEs in beavers in an unpolluted environment, thereby allowing for their use as model organisms in tracking how heavy metal pollutants may affect wildlife.

The uterusmasculinus of the Eurasian beaver (Castor fever L.) - The appraisal of fast hormone regulation by membrane androgen and estrogen receptors involvement.

The phenomenon of remaining paramesonephric ducts (uterus masculinus) in males of some animal species concerning its role is still an unresolved issue. Now it is well-recognized that sex hormonal regulation of reproductive physiology involves also fast nongenomic control of cellular processes through noncanonical signaling. Herein, in the uterus masculinus of Eurasian beaver membrane androgen receptor (metal ion transporter Zrt- and Irt-like protein 9; ZIP9) and membrane estrogen receptor (G protein-coupled estrogen receptor; GPER) were studied. Scanning electron microscopy together with anatomical analysis revealed that Eurasian male beavers possess one double uterus (uterus duplex). Two odd parts open into the vagina but do not form a common lumen. The length of the horns is the most differential feature of this organ in studied animals. Uterus masculinus is not a tightly closed tubular structure. Histological analysis showed an analogy to the female uterus structure however no glands but gland-like structures were observed. The presence and abundant localization of ZIP9 and GPER proteins in cells of uterus masculinus was confirmed by immunohistochemistry while their expression was measured by western blotting. GPER expression in remnants was lower (P < 0.001) than those in the female uterus. Parallelly, the concentration of progesterone and estradiol but not testosterone was lower (P < 0.05 and P < 0.01, respectively) in comparison to the female uterus. Our study, for the first time, reports the involvement of fast hormonal regulation in the uterus masculinus of Eurasian beavers reflecting the participation of this organ in the creation local hormonal environment. Moreover, the uterus masculinus seems to be a useful research model for understanding and resolving urgent biological problems such as gender identities and having children by women with a lack of uterus or anatomical barriers on this level.

Ecosystem carbon and nitrogen gains following 27 years of grazing management in a semiarid alluvial valley.

Soils in semiarid riparian ecosystems have large carbon (C) stocks that promote water and nutrient availability for productive plant communities consumed by grazing animals. Changes to riparian hydrologic conditions caused by channel incision result in different edaphic conditions and a greater abundance of upland plant species that may be associated with lower soil C stocks. Using riparian meadows alongside Maggie Creek in central Nevada, we show that 27 years of modified grazing practices can repair ecosystem processes and increase the C stocks. We compared C and nitrogen (N) stocks (of soils and plant biomass) on floodplains, terraces, and uplands of reaches where grazing was either modified or excluded to reaches where no changes to grazing practices were made. Grazing management allowed beaver to establish, improving hydrology and lengthening the growing season. These changes allowed C and N to accumulate on geomorphic surfaces that extended from the stream channel to the surrounding hillslopes. A stoichiometric relationship between C and N shows carbon sequestration can reduce nutrient runoff to nearby waterways and may depend on nitrogen availability. Gains in ecosystem carbon ranged from 93 to 452 g C m-2 y-1 and were dominated by increases in soil C. Gains in soil C occurred across the full depth range measured (0-45 cm) and were comparable to those found in restored wetlands and meadows located in more humid ecosystems. Carbon gains exhibited substantial variability caused by microtopography and plant community composition. While grazing exclusion resulted in the largest gains in ecosystem C, managed grazing that limited consumption of riparian plants increased ecosystem C relative to reaches where management wasn't changed. We demonstrate that managed grazing that maintains ecosystem process is compatible with projects aimed at increasing soil carbon in semiarid riparian rangelands.

Facilitative interaction promotes occupancy of a desert amphibian across a climate gradient.

Biotic interactions and environmental factors influence a species' occurrence. Facilitative interactions have the potential to expand species occupancy and mitigate abiotic stress, but are often not considered. The Great Basin clade of the Columbia spotted frog (Rana luteiventris) is an aquatic amphibian found in the arid and semi-arid Great Basin, USA. Aquatic resources in this system are limited and likely to change under future climate scenarios. American beavers (Castor canadensis) are ecosystem engineers that impact the surrounding landscape by increasing water availability. Consequently, beaver-created habitat can facilitate the presence of other species by providing the aquatic resources required by many aquatic and riparian animals. Our objective was to understand patterns of co-occurrence between Columbia spotted frogs and beavers across environmental gradients in the Great Basin, USA. We used environmental DNA detections to quantify the co-occurrence of Columbia spotted frog and beaver using a two-species occupancy framework. At the lowest annual precipitation (202 mm), Columbia spotted frogs were 3× (95% CI 2.35, 3.96) more likely to occur with beavers than without; however, they were less likely to occur with beavers once precipitation was > 380 mm. Thus, beaver activity may increase aquatic resources for Columbia spotted frogs in the Great Basin that may mitigate changing precipitation patterns under climate change. Facilitative interactions likely extend to other aquatic species in arid systems and highlight an important consideration for ecologists when evaluating a species' response to climate change, and may promote the formation of refugia for species with strict abiotic tolerances and dispersal limitations.

First report of molecular taxonomic analyses of European beaver metazoan parasites from Hungary.

European beaver (Castor fiber L. 1758) is the biggest rodent species living in Europe. Beavers are semi-aquatic animals; they are defecating directly into the water; thus, they have an important role in spreading parasites related to water (e.g., protozoa and flukes). The first specimens of this once extinct rodent species in Hungary turned up in Szigetköz (upper flow of the Hungarian Danube) in 1991 dispersed from Austria. The reintroduction to Hungary started in 1996, and the population slowly increased in number up to around 4000 individuals, but the knowledge about their parasites is lacking. This is the first report on the metazoan parasites of beavers in Hungary and their molecular taxonomy. In the 5-year study, 47 beavers were trapped in four locations and euthanized with permission. Three different metazoan parasites were collected: larvae and adults of Platypsyllus castoris beetles, nymphs and adults of Schizocarpus sp. mites and eggs and adults of Stichorchis subtriquetrus flukes. From these three parasite species, molecular taxonomic studies were also carried out. The low number of metazoan parasites species detected in Hungarian beavers compared to other European countries (e.g., Poland) might be attributed to host population bottleneck effect during reintroduction. As parasites represent a significant component of the biodiversity and ecosystem, the conservation efforts should focus not only on host species but also on their parasites.

How should we manage a strong Eurasian Beaver population? A comparison of population trends in Poland and Belarus.

The Eurasian beaver is currently found in at least 32 European countries, with many of these populations being established in the 1960s. In most European countries, the beaver is under protection, however, when the population is strong, the beaver becomes a game species. In Poland, the beaver is partially protected despite the species having a strong population. In this study we aimed to compare the development trends of Eurasian beaver populations in two management regimes, in Poland (protected) and Belarus (hunted), between 2004 and 2019. We compared beaver population trends in both countries, and analyzed the factors that could impact population growth. In Poland, during this period the population increased 3.5 times, while in Belarus it was only 20%. Distinct differences in the rate of population numbers increase were also observed between regions in Poland, but a stable, slight increase similar in all regions in Belarus. Our study did not show that precipitation or the density of this species influenced the rate of population development in Poland. During this period, hunting and wolf density significantly and negatively impacted beaver population growth in Belarus, but in the long-term analysis, hunting had a lower impact on beaver population growth. We concluded that we can expect a further increase in this population in Poland. Long-term hunting at a level of 13,7% (based on the analysis of population dynamics and hunting bags for Belarus) of the annual population seems to be a safe value for the beaver population. Nevertheless more detailed analysis should be carried out in the face of the large differences between regions.

Relative Effectiveness of Four Different Guards In Preventing Beaver Cutting of Urban Trees.

Beavers are expanding into cities as they recolonize their historic range. While they increase the ecological functioning of urban green areas, human-beaver conflicts occur. Public support to deal with conflicts has shifted from population to forage control. Tree guards are becoming popular with management personnel in North America and Europe to reduce damage to valuable trees. The problem is that this management technique has not been studied. We inventoried the tree guard types in use in natural and manicured river parks in the City of Saskatoon, Canada, determined their adherence to an installation protocol by measuring guard dimensions, and assessed the relative effectiveness of guards in protecting trees from beaver cutting. The inventory revealed that four types of tree guards are in use, ranging from light gauge chicken wire to heavy gauge chain link fencing. Overall, 11% of the trees with guards that we inventoried were cut by beavers, but variation among guard types was observed. Less than 10% of trees with type i and ii guards were beaver cut whereas 17% of trees with types iii and iv guards were beaver cut. Fewer trees were cut when there was adherence to installation protocol, regardless of guard type. Cut trees with guard types i, iii and iv experienced both minor and major damage whereas cut trees with guard type ii experienced only minor damage. The study results have implications for developing effectiveness and implementation monitoring plans for tree guards as part of an overall beaver management plan.

Renewed coexistence: learning from steering group stakeholders on a beaver reintroduction project in England.

Species reintroductions are growing in popularity, and example motivations include supporting species populations or the restoration of ecosystem function. Interactions between humans and the reintroduced species are likely to occur post-reintroduction. Coexistence between humans and wildlife is adaptive and dynamic, in part requiring management of conflicts between humans and wildlife, or of conflicts between humans over wildlife management. We seek to learn from the experiences of steering group members in a Eurasian beaver (Castor fiber) project in England and identify how governance of coexistence with reintroduced species may differ from the governance of coexistence with species that are already present in the landscape. Using a qualitative thematic analysis of an online survey, we identify a series of lessons in six key areas: (1) project governance, (2) stakeholder engagement, (3) research and monitoring programme, (4) strategy to manage arising conflicts, (5) public engagement, and (6) broad perspectives on reintroduction trials. We advocate for reflective evaluation as an essential component of reintroduction projects to enable knowledge-sharing from experiences, leading to improved practices in the future. Reflecting on our analysis, we identify and define 'Renewed Coexistence'-a new term that draws on pre-existing coexistence knowledge but identifies the unique elements that relate to governing coexistence with reintroduced species. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10344-021-01555-6.

Functional trait sorting increases over succession in metacommunity mosaics of fish assemblages.

Metacommunity theory predicts that the relative importance of regional and local processes structuring communities will change over time since initiation of community assembly. Determining effects of these processes on species and trait diversity over succession remains largely unaddressed in metacommunity ecology to date, yet could confer an improved mechanistic understanding of community assembly. To test theoretical predictions of the increasing importance of local processes in structuring communities over successional stages in metacommunities, we evaluated fish species and trait diversity in three pond metacommunities undergoing secondary succession from beaver (Castor canadensis) disturbance. Processes influencing taxonomic and trait diversity were contrasted across pond communities of different ages and in reference streams. Counter to predictions, the local environment became less important in structuring communities over succession but did exert a stronger effect on trait sorting. Beta diversity and trait richness declined over succession while there was no influence on species richness or trait dispersion. The trait filtering in older habitats was likely a response to the larger and deeper pond ecosystems characteristic of late succession. In contrast to these observed effects in ponds, the local environment primarily structured species and trait diversity in streams. Analyses of the relative importance of regional and local processes in structuring fish assemblages within each pond metacommunity suggests that habitat age and connectivity were more important than the environment in structuring communities but contributions were region and scale-dependent. Together, these findings highlight that regional and local processes can differentially influence taxonomic and trait diversity in successional metacommunity mosaics.

First report on parasites of European beavers in the Slovak Republic.

European beaver (Castor fiber L. 1758) is the biggest rodent living in Europe. It is a semi-aquatic animal known for building dams and burrows. European beaver is a potential host for a wide range of parasites and other infectious diseases. In Slovakia, there is an increasing number of beavers but the data about their parasitic fauna are missing. Our work is the first documentation about the beaver's parasitofauna in Slovakia. In a 1-year study, we collected and examined 19 beaver fecal samples from the vicinity of beaver burrows inhabiting three particular localities at the Danube, Topla, and Laborec rivers in Slovakia. In these fecal samples, 4 different species of intestinal endoparasites were detected as follows: oocysts of Cryptosporidium, cysts of Giardia, eggs of Stichorchis subtriquetrus, and eggs and larvae of Travassosius rufus. Parasites were confirmed only in samples collected at river Topla. Based on our results, we can conclude that European beaver can be an important source of parasitic contamination of surface waters especially in the localities shared by people.

Effects of land use change, wetland fragmentation, and best management practices on total suspended sediment concentrations in an urbanizing Oregon watershed, USA.

While many different watershed management strategies have been implemented to improve water quality, relatively few studies empirically tested the combined effects of different strategies on water quality in relation to land cover changes using long-term empirical data at the sub-basin scale. Using 10 years of total suspended solids (TSS) data, we examined how the conversion of wetland, wetland fragmentation, beaver dams, and Best Management Practices (BMPs) affect wet season TSS concentrations for the 25 monitoring stations in the Tualatin River basin, USA. Geographic information systems, FRAGSTATS, and correlation analysis were used to identify the direction of land cover change, degree of wetland fragmentation, and the strength of the relationship between TSS change and explanatory variables. Improvement in TSS concentrations was tightly coupled with the aggregation of wetlands, presence of beaver dams, particularly during the mid-wet season when flows were highest. Other BMPs effectively reduced TSS concentrations for the early and late-wet seasons when flows were not as high as in the middle wet-season. Aggregated wetlands were more effective for improving water quality than smaller disaggregated wetlands of similar total area when combined with the presence of beaver dams and BMPs. These findings offer important scientific and practical implications for management of urbanizing watersheds that seek to achieve the dual goals of improving environmental quality and land development.

Source or sink? Quantifying beaver pond influence on non-point source pollutant transport in the Intermountain West.

Non-point source (NPS) pollution remains high in many watersheds despite strategies aimed at reducing such pollution. Beaver (Castor canadensis) activity converts lotic systems to semi-lentic by impounding stream flow and trapping sediments, which have a high affinity for NPS pollutants such as nitrogen (N), phosphorus (P), and heavy metals. This study aimed to identify environmental conditions under which beaver ponds influence the fate and cycling of NPS pollutants. Dissolved and particulate nutrients were sampled upstream and downstream of three headwater beaver ponds differing in age and character through the summer season. Sedimentation rates and sediment concentrations of nutrients and metals were also determined. Results from this study suggest that beaver ponds can attenuate heavy metals at a rate 2 to 4 times greater than a riffle reach (p < 0.05). Metal sequestration scaled with pond age and sediment organic matter content. The oldest and youngest ponds had no significant effect on dissolved nutrients (NO3-, TDN and SRP) or total P (TP). The middle age pond was a significant TN sink in summer (0.6-0.8 g N m-2 d-1 [p = 0.03]) and influenced dissolved nutrient concentrations differently in spring (21% NO3- sink [p = 0.03], 61% SRP source [p = 0.05]) compared to summer (34% NO3- source, 7% SRP sink). This pond had little apparent effect on TP loads during the study period but accumulated a total of 146 g m-2 of phosphorus in the sediments suggesting that beaver ponds may reach their phosphorus sequestration potential within the first few years of pond development and then subsequently act as a weak SRP source. We use a theoretical relationship describing sediment-water interactions to show that biogeochemical processing in a beaver pond is optimized at intermediate levels of pond nutrient supply and residence time. If beaver ponds are to be considered as an option for landscape scale restoration, this theoretical relationship may be useful for predicting the effects of beaver ponds on water chemistry, and aid in the interpretation of variable water quality results from inherently heterogeneous environments.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

BACKGROUND: Long noncoding RNAs (lncRNAs) have roles in gene regulation, epigenetics, and molecular scaffolding and it is hypothesized that they underlie some mammalian evolutionary adaptations. However, for many mammalian species, the absence of a genome assembly precludes the comprehensive identification of lncRNAs. The genome of the American beaver (Castor canadensis) has recently been sequenced, setting the stage for the systematic identification of beaver lncRNAs and the characterization of their expression in various tissues. The objective of this study was to discover and profile polyadenylated lncRNAs in the beaver using high-throughput short-read sequencing of RNA from sixteen beaver tissues and to annotate the resulting lncRNAs based on their potential for orthology with known lncRNAs in other species. RESULTS: Using de novo transcriptome assembly, we found 9528 potential lncRNA contigs and 187 high-confidence lncRNA contigs. Of the high-confidence lncRNA contigs, 147 have no known orthologs (and thus are putative novel lncRNAs) and 40 have mammalian orthologs. The novel lncRNAs mapped to the Oregon State University (OSU) reference beaver genome with greater than 90% sequence identity. While the novel lncRNAs were on average shorter than their annotated counterparts, they were similar to the annotated lncRNAs in terms of the relationships between contig length and minimum free energy (MFE) and between coverage and contig length. We identified beaver orthologs of known lncRNAs such as XIST, MEG3, TINCR, and NIPBL-DT. We profiled the expression of the 187 high-confidence lncRNAs across 16 beaver tissues (whole blood, brain, lung, liver, heart, stomach, intestine, skeletal muscle, kidney, spleen, ovary, placenta, castor gland, tail, toe-webbing, and tongue) and identified both tissue-specific and ubiquitous lncRNAs. CONCLUSIONS: To our knowledge this is the first report of systematic identification of lncRNAs and their expression atlas in beaver. LncRNAs-both novel and those with known orthologs-are expressed in each of the beaver tissues that we analyzed. For some beaver lncRNAs with known orthologs, the tissue-specific expression patterns were phylogenetically conserved. The lncRNA sequence data files and raw sequence files are available via the web supplement and the NCBI Sequence Read Archive, respectively.

Smokey the Beaver: beaver-dammed riparian corridors stay green during wildfire throughout the western United States.

Beaver dams are gaining popularity as a low-tech, low-cost strategy to build climate resiliency at the landscape scale. They slow and store water that can be accessed by riparian vegetation during dry periods, effectively protecting riparian ecosystems from droughts. Whether or not this protection extends to wildfire has been discussed anecdotally but has not been examined in a scientific context. We used remotely sensed Normalized Difference Vegetation Index (NDVI) data to compare riparian vegetation greenness in areas with and without beaver damming during wildfire. We include data from five large wildfires of varying burn severity and dominant landcover settings in the western United States in our analysis. We found that beaver-dammed riparian corridors are relatively unaffected by wildfire when compared to similar riparian corridors without beaver damming. On average, the decrease in NDVI during fire in areas without beaver is 3.05 times as large as it is in areas with beaver. However, plant greenness rebounded in the year after wildfire regardless of beaver activity. Thus, we conclude that, while beaver activity does not necessarily play a role in riparian vegetation post-fire resilience, it does play a significant role in riparian vegetation fire resistance and refugia creation.

Causes and consequences of inverse density-dependent territorial behaviour and aggression in a monogamous mammal.

Territoriality is an important process shaping population dynamics, and the defence of a territory is crucial for individuals to increase the duration of territory occupancy and, consequently, reproductive success. However, little is known about how the frequency of territory intrusions and subsequent territorial behaviours and aggression by territory owners are affected by external factors, such as population density. This is important because it can affect mate change (the replacement of one pair member) and dispersal, a key ecological process. The aim of this study was to investigate the behavioural and spatial response of territory owners to intruder pressure as a function of population density in a territorial, monogamous mammal, the Eurasian beaver (Castor fiber). Using a combination of GPS technology, scent experiments, camera trap data and tail scar observations from an individual-based long-term study, we investigated the factors influencing spatial movement patterns by territory owners in response to a simulated intruder and the factors affecting territory intrusions. We found consistent inverse density-dependent patterns in territorial behaviours and evidence of conspecific aggression. At lower densities, territory owners detected more simulated intrusions, showed more territorial reactions and experienced increased conspecific aggression as indicated by tail scars, suggesting increased intruder pressure. Inverse density-dependent territorial behaviour and aggression suggest a potential mechanistic link between inverse density-dependent natal dispersal and mate change. At low population densities, increased dispersal amplifies intruder pressure, leading to the observed increases in territorial behaviours, conspecific aggression and previously observed mate turnover, which in turn might increase natal dispersal. Our study demonstrates how population density can affect the behaviour and space use of individuals, which is important for territory occupancy and fitness.

Sex- and season-dependent differences in the expression of adiponectin and adiponectin receptors (AdipoR1 and AdipoR2) in the hypothalamic-pituitary-adrenal axis of the Eurasian beaver (Castor fiber L.).

Adiponectin, a product of the Adipoq gene, is an adipocyte-derived protein hormone of the cytokine family and the most abundantly expressed adipokine. Adiponectin and its receptors AdipoR1 and AdipoR2 (collectively referred to as the adiponectin system) are widely expressed in the central nervous system and other tissues, which suggests that this hormone has pleiotropic effects. Adiponectin could also play a role in the modulation of the hypothalamic-pituitaryadrenal (HPA) hormonal regulatory axis. There is a general scarcity of data on the adiponectin system in wild animals where annual changes in reproductive activity are linked with fluctuations in the activity of the HPA axis. The Eurasian beaver (Castor fiber L.) could be an interesting and suitable model for investigating the above processes. We hypothesized that the expression of the adiponectin system in the tissues of the beaver HPA axis is sex- and season-dependent. The study was performed on adult animals harvested during three different stages of reproductive activity: April ('breeding'), July ('post-breeding') and November ('pre-breeding'). The expression of the adiponectin system was confirmed in all branches (mediobasal hypothalamus, pituitary, adrenal cortex) of the HPA axis in both sexes and during all periods of reproductive activity. The expression of Adipoq, AdipoR1 and AdipoR2 was generally dependent on sex and the period of the reproductive season. The expression of adiponectin system genes was particularly pronounced in the adrenal cortex. These findings suggest that the adiponectin system in the Eurasian beaver could link reproductive processes with stress responses and energy metabolism.

Beaver (Castor canadensis) use of borrow pits in an industrial landscape in northwestern Alberta.

Borrow pits, dug by industry to provide substrate for infrastructure such as roads and well sites, are prevalent throughout the boreal forest of western Canada yet little is known about their use by wildlife. During field surveys in Rainbow Lake, Alberta, we found that beavers (Castor canadensis) used inundated borrow pits extensively for foraging and over wintering, suggesting that borrow pits increase beaver populations above their natural carrying capacity in industrial landscapes. We visited a random sample of 90 borrow pits in the field and categorized them as having active beaver lodges with caches (n = 16), inactive lodges (n = 13), cutting (n = 29), no activity (n = 13), or as not inundated or not a borrow pit (n = 19). We then used this sample to model where beavers established lodges versus where they were inactive or were only cutting. We found that borrow pits with active lodges had unique characteristics from other pits in our sample and were closer to streams, marshes, and swamps and had greater vegetation concealment from roads. These models can be used by managers to develop methods for increasing or decreasing the abundance of beavers living at borrow pits. Wildlife managers might want to use borrow pits to increase beaver abundance because of the positive effects beavers can have on ecosystems and because beavers are an important source of food for boreal carnivores. For example, we found that wolverines (Gulo gulo) used borrow pits as hunting grounds for beavers and one wolverine denned within a beaver lodge at a borrow pit. Conversely, managers might want to reduce beaver populations living at borrow pits because of the damage that beavers can cause to infrastructure and because subsidized beaver populations might alter predator-prey dynamics. To accomplish this, we suggest reducing available vegetation around borrow pits, isolating new borrow pits from natural beaver habitats, digging borrow pits where there is less chance of having surface water, filling in borrow pits with substrate, or not creating borrow pits and using a centralized gravel pit or mine for substrate.

Modelling Eurasian beaver foraging habitat and dam suitability, for predicting the location and number of dams throughout catchments in Great Britain.

Eurasian beaver (Castor fiber) populations are expanding across Europe. Depending on location, beaver dams bring multiple benefits and/or require management. Using nationally available data, we developed: a Beaver Forage Index (BFI), identifying beaver foraging habitat, and a Beaver Dam Capacity (BDC) model, classifying suitability of river reaches for dam construction, to estimate location and number of dams at catchment scales. Models were executed across three catchments, in Great Britain (GB), containing beaver. An area of 6747 km2 was analysed for BFI and 16,739 km of stream for BDC. Field surveys identified 258 km of channel containing beaver activity and 89 dams, providing data to test predictions. Models were evaluated using a categorical binomial Bayesian framework to calculate probability of foraging and dam construction. BFI and BDC models successfully categorised the use of reaches for foraging and damming, with higher scoring reaches being preferred. Highest scoring categories were ca. 31 and 79 times more likely to be used than the lowest for foraging and damming respectively. Zero-inflated negative binomial regression showed that modelled dam capacity was significantly related (p = 0.01) to observed damming and was used to predict numbers of dams that may occur. Estimated densities of dams, averaged across each catchment, ranged from 0.4 to 1.6 dams/km, though local densities may be up to 30 dams/km. These models provide fundamental information describing the distribution of beaver foraging habitat, where dams may be constructed and how many may occur. This supports the development of policy and management concerning the reintroduction and recolonisation of beaver.

De novo characterization of placental transcriptome in the Eurasian beaver (Castor fiber L.).

Our pioneering data provide the first comprehensive view of placental transcriptome of the beaver during single and multiple gestation. RNA-Seq and a de novo approach allowed global pattern identification of C. fiber placental transcriptome. Non-redundant beaver transcriptome comprised 211,802,336 nt of placental transcripts, grouped into 128,459 contigs and clustered into 83,951 unigenes. An Ensembl database search revealed 14,487, 14,994, 15,004, 15,267 and 15,892 non-redundant homologs for Ictidomys tridecemlineatus, Rattus norvegicus, Mus musculus, Homo sapiens and Castor canadensis, respectively. Due to expression levels, the identified transcripts were divided into two sets: non-redundant and highly expressed (FPKM > 2 in at least three examined samples), analysed simultaneously. Among 17,009 highly expressed transcripts, 12,147 had BLASTx hits. GO annotations (175,882) were found for 4301 transcripts that were assigned to biological process (16,386), cellular component (9149) and molecular function (8338) categories; 666 unigenes were also classified into 122 KEGG pathways. Comprehensive analyses were performed for 411 and 3078 highly expressed transcripts annotated with a list of processes linked to 'placenta' (31 GO terms) or 'embryo' (324 GO terms), respectively. Among transcripts with entire CDS annotation, 281 (placenta) and 34 (embryo) alternative splicing events were identified. A total of 8499 putative SNVs (~ 6.2 SNV/transcript and 1.7 SNV/1 kb) were predicted with 0.1 minimum frequency and maximum variant quality (p value 10e-9). Our results provide a broad-based characterization of the global expression pattern of the beaver placental transcriptome. Enhancement of transcriptomic resources for C. fiber should improve understanding of crucial pathways relevant to proper placenta development and successful reproduction.