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1.
Biochemistry (Mosc) ; 89(4): 626-636, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38831500

RESUMO

Su(Hw) belongs to the class of proteins that organize chromosome architecture, determine promoter activity, and participate in formation of the boundaries/insulators between the regulatory domains. This protein contains a cluster of 12 zinc fingers of the C2H2 type, some of which are responsible for binding to the consensus site. The Su(Hw) protein forms complex with the Mod(mdg4)-67.2 and the CP190 proteins, where the last one binds to all known Drosophila insulators. To further study functioning of the Su(Hw)-dependent complexes, we used the previously described su(Hw)E8 mutation with inactive seventh zinc finger, which produces mutant protein that cannot bind to the consensus site. The present work shows that the Su(Hw)E8 protein continues to directly interact with the CP190 and Mod(mdg4)-67.2 proteins. Through interaction with Mod(mdg4)-67.2, the Su(Hw)E8 protein can be recruited into the Su(Hw)-dependent complexes formed on chromatin and enhance their insulator activity. Our results demonstrate that the Su(Hw) dependent complexes without bound DNA can be recruited to the Su(Hw) binding sites through the specific protein-protein interactions that are stabilized by Mod(mdg4)-67.2.


Assuntos
Cromatina , Proteínas de Drosophila , Drosophila melanogaster , Proteínas Repressoras , Fatores de Transcrição , Proteínas de Drosophila/metabolismo , Proteínas de Drosophila/genética , Proteínas de Drosophila/química , Animais , Cromatina/metabolismo , Fatores de Transcrição/metabolismo , Drosophila melanogaster/metabolismo , Proteínas Repressoras/metabolismo , Proteínas Repressoras/genética , Ligação Proteica , Proteínas Nucleares/metabolismo , Proteínas de Ligação a DNA/metabolismo , Dedos de Zinco , Proteínas Associadas aos Microtúbulos
2.
Int J Mol Sci ; 25(9)2024 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-38731837

RESUMO

Chromatin architecture is critical for the temporal and tissue-specific activation of genes that determine eukaryotic development. The functional interaction between enhancers and promoters is controlled by insulators and tethering elements that support specific long-distance interactions. However, the mechanisms of the formation and maintenance of long-range interactions between genome regulatory elements remain poorly understood, primarily due to the lack of convenient model systems. Drosophila became the first model organism in which architectural proteins that determine the activity of insulators were described. In Drosophila, one of the best-studied DNA-binding architectural proteins, Su(Hw), forms a complex with Mod(mdg4)-67.2 and CP190 proteins. Using a combination of CRISPR/Cas9 genome editing and attP-dependent integration technologies, we created a model system in which the promoters and enhancers of two reporter genes are separated by 28 kb. In this case, enhancers effectively stimulate reporter gene promoters in cis and trans only in the presence of artificial Su(Hw) binding sites (SBS), in both constructs. The expression of the mutant Su(Hw) protein, which cannot interact with CP190, and the mutation inactivating Mod(mdg4)-67.2, lead to the complete loss or significant weakening of enhancer-promoter interactions, respectively. The results indicate that the new model system effectively identifies the role of individual subunits of architectural protein complexes in forming and maintaining specific long-distance interactions in the D. melanogaster model.


Assuntos
Proteínas de Drosophila , Elementos Facilitadores Genéticos , Regiões Promotoras Genéticas , Proteínas de Drosophila/metabolismo , Proteínas de Drosophila/genética , Animais , Drosophila melanogaster/genética , Drosophila melanogaster/metabolismo , Sistemas CRISPR-Cas , Proteínas de Ligação a DNA/metabolismo , Proteínas de Ligação a DNA/genética , Cromatina/metabolismo , Cromatina/genética , Elementos Isolantes/genética , Sítios de Ligação , Ligação Proteica , Proteínas Nucleares/metabolismo , Proteínas Nucleares/genética , Edição de Genes/métodos , Proteínas Repressoras/metabolismo , Proteínas Repressoras/genética , Proteínas Associadas aos Microtúbulos
3.
Molecules ; 29(3)2024 Feb 03.
Artigo em Inglês | MEDLINE | ID: mdl-38338450

RESUMO

Aluminum (Al) placed in hot water (HW) at 90 °C is roughened due to its reaction with water, forming Al hydroxide and Al oxide, as well as releasing hydrogen gas. The roughened surface is thus hydrophilic and possesses a hugely increased surface area, which can be useful in applications requiring hydrophilicity and increased surface area, such as atmospheric moisture harvesting. On the other hand, when using HW to roughen specified areas of an Al substrate, ways to protect the other areas from HW attacks are necessary. We demonstrated that self-assembled monolayers (SAMs) of a fluorinated phosphonic acid (FPA, CF3(CF2)13(CH2)2P(=O)(OH)2) derivatized on the native oxide of an Al film protected the underneath metal substrate from HW attack. The intact wettability and surface morphology of FPA-derivatized Al subjected to HW treatment were examined using contact angle measurement, and scanning electron microscopy and atomic force microscopy, respectively. Moreover, the surface and interface chemistry of FPA-derivatized Al before and after HW treatment were investigated by time-of-flight secondary ion mass spectrometry (ToF-SIMS), verifying that the FPA SAMs were intact upon HW treatment. The ToF-SIMS results therefore explained, on the molecular level, why HW treatment did not affect the underneath Al at all. FPA derivatization is thus expected to be developed as a patterning method for the formation of hydrophilic and hydrophobic areas on Al when combined with HW treatment.

4.
Dokl Biochem Biophys ; 517(1): 127-133, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38744735

RESUMO

Transvection is a phenomenon of interallelic communication in which enhancers can activate a specific promoter located on a homologous chromosome. Insulators play a significant role in ensuring functional interactions between enhancers and promoters. In the presented work, we created a model where two or three copies of the insulator are located next to enhancers and promoters localized on homologous chromosomes. Using the Su(Hw) insulator as a model, we showed that the functional interaction between a pair of insulators promotes enhancer-promoter trans-interactions. The interaction between the three insulators, on the contrary, can lead to the formation of chromatin loops that sterically hinder the full enhancer-promoter interaction. The results of the work suggest the participation of insulators in the regulation of homologous chromosome pairing and in communication between distant genomic loci.


Assuntos
Proteínas de Drosophila , Drosophila melanogaster , Elementos Facilitadores Genéticos , Elementos Isolantes , Regiões Promotoras Genéticas , Animais , Drosophila melanogaster/genética , Proteínas de Drosophila/metabolismo , Proteínas de Drosophila/genética , Elementos Isolantes/genética , Proteínas Repressoras/metabolismo , Proteínas Repressoras/genética , Cromatina/metabolismo , Cromatina/genética
5.
Hum Resour Health ; 21(1): 24, 2023 03 20.
Artigo em Inglês | MEDLINE | ID: mdl-36941682

RESUMO

BACKGROUND: In the quest to ensure that quality healthcare is provided to all citizens through building healthcare worker capacity and extending reach for expert services, Zambia's Ministry of Health (MoH) in collaboration with its partners PEPFAR through the CDC and HRSA, began to implement the Extension for Community Healthcare Outcomes (ECHO) tele-mentoring program across the country through the Health Workers for the 21st Century (HW21) Project and University Teaching Hospital HIV/AIDS Project (UTH-HAP). This ECHO tele-mentoring approach was deemed pivotal in helping to improve the human immunodeficiency virus (HIV) service delivery capacity of health care workers. METHOD: The study used a mixed method, retrospective program evaluation to examine ECHO participants' performance in the management of HIV/AIDS patients in all the 10 provinces of Zambia. CASE PRESENTATION: A phenomenological design was applied in order to elicit common experiences of ECHO users through focus group discussions using semi-structured facilitation guides in four provinces (Eastern, Lusaka, Southern and Western) implementing ECHO tele-mentoring approach. These provinces were purposively selected for this study. From which, only participants that had a monthly frequency of ECHO attendance of ten (10) and above were selected. The participants were purposively selected based on the type of cadre as well as facility type so that the final sample consisted of Doctors, Nurses, Midwives, Clinical Officers, Medical Licentiates, Pharmacy and Laboratory Personnel. All sessions were audio recorded and transcribed by the data collectors. A thematic content analysis approach was adopted for analyzing content of the interview's transcripts. RESULTS: Enhanced knowledge and skills of participants on HIV/TB improved by 46/70 (65.7%) in all provinces, while 47/70 (67.1%) of the participants reported that ECHO improved their clinical practice. Further, 12/70 (17.1%) of participants in all provinces reported that presenter/presentation characteristics facilitated ECHO implementation and participation. While, 15/70(21.4%) of the participants reported that ownership of the program had contributed to ECHO implementation and participation. Coordination, another enabler accounted for 14/70 (20%). Inclusiveness was reported as a barrier by 16/70 (22.8%) of the participants while 6/70 (8.6%) of them reported attitudes as a barrier (8.6%) to ECHO participation. In addition, 34/70 (48.6%) reported poor connectivity as a barrier to ECHO implementation and participation while 8/70 (11.5%) of the participants reported that the lack of ownership of the ECHO program was a barrier. 22/70 (31.4%) reported that increased workload was also a barrier to the program's implementation. CONCLUSION: Consistent with its logical pathway model, healthcare providers' participation in ECHO sessions and onsite mentorship contributed to improved knowledge on HIV/TB among health care providers and patient health outcomes. In addition, barriers to ECHO implementation were intrinsic to the program its self, such as coordination, presenter and presentation characteristics other barriers were extrinsic to the program such as poor connectivity, poor infrastructure in health facilities and negative attitudes towards ECHO. Improving on intrinsic factors and mitigating extrinsic factors may help improve ECHO outcomes and scale-up plans.


Assuntos
Infecções por HIV , Tutoria , Humanos , Instalações de Saúde , HIV , Infecções por HIV/terapia , Mentores , Avaliação de Programas e Projetos de Saúde , Estudos Retrospectivos , Zâmbia
6.
Int J Mol Sci ; 24(21)2023 Nov 02.
Artigo em Inglês | MEDLINE | ID: mdl-37958900

RESUMO

CP190 is a co-factor in many Drosophila architectural proteins, being involved in the formation of active promoters and insulators. CP190 contains the N-terminal BTB/POZ (Broad-Complex, Tramtrack and Bric a brac/POxvirus and Zinc finger) domain and adjacent conserved regions involved in protein interactions. Here, we examined the functional roles of these domains of CP190 in vivo. The best-characterized architectural proteins with insulator functions, Pita, Su(Hw), and dCTCF, interacted predominantly with the BTB domain of CP190. Due to the difficulty of mutating the BTB domain, we obtained a transgenic line expressing a chimeric CP190 with the BTB domain of the human protein Kaiso. Another group of architectural proteins, M1BP, Opbp, and ZIPIC, interacted with one or both of the highly conserved regions in the N-terminal part of CP190. Transgenic lines of D. melanogaster expressing CP190 mutants with a deletion of each of these domains were obtained. The results showed that these mutant proteins only partially compensated for the functions of CP190, weakly binding to selective chromatin sites. Further analysis confirmed the essential role of these domains in recruitment to regulatory regions associated with architectural proteins. We also found that the N-terminal of CP190 was sufficient for recruiting Z4 and Chromator proteins and successfully achieving chromatin opening. Taken together, our results and the results of previous studies showed that the N-terminal region of CP190 is a platform for simultaneous interaction with various DNA-binding architectural proteins and transcription complexes.


Assuntos
Proteínas de Drosophila , Drosophila , Animais , Humanos , Drosophila/genética , Drosophila/metabolismo , Drosophila melanogaster/genética , Drosophila melanogaster/metabolismo , Proteínas Nucleares/genética , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas de Ligação a DNA/metabolismo , Proteínas de Drosophila/metabolismo , Cromatina/metabolismo , Ligação Proteica , Fatores de Transcrição/metabolismo
7.
Int J Mol Sci ; 24(19)2023 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-37834476

RESUMO

Drosophila CP190 and CP60 are transcription factors that are associated with centrosomes during mitosis. CP190 is an essential transcription factor and preferentially binds to housekeeping gene promoters and insulators through interactions with architectural proteins, including Su(Hw) and dCTCF. CP60 belongs to a family of transcription factors that contain the N-terminal MADF domain and the C-terminal BESS domain, which is characterized by the ability to homodimerize. In this study, we show that the conserved CP60 region adjacent to MADF is responsible for interacting with CP190. In contrast to the well-characterized MADF-BESS transcriptional activator Adf-1, CP60 is recruited to most chromatin sites through its interaction with CP190, and the MADF domain is likely involved in protein-protein interactions but not in DNA binding. The deletion of the Map60 gene showed that CP60 is not an essential protein, despite the strong and ubiquitous expression of CP60 at all stages of Drosophila development. Although CP60 is a stable component of the Su(Hw) insulator complex, the inactivation of CP60 does not affect the enhancer-blocking activity of the Su(Hw)-dependent gypsy insulator. Overall, our results indicate that CP60 has an important but redundant function in transcriptional regulation as a partner of the CP190 protein.


Assuntos
Proteínas de Drosophila , Drosophila , Animais , Drosophila/metabolismo , Drosophila melanogaster/genética , Drosophila melanogaster/metabolismo , Proteínas de Drosophila/metabolismo , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas Nucleares/metabolismo , Ligação Proteica , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
8.
Int J Mol Sci ; 24(3)2023 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-36769179

RESUMO

In higher eukaryotes, the regulation of developmental gene expression is determined by enhancers, which are often located at a large distance from the promoters they regulate. Therefore, the architecture of chromosomes and the mechanisms that determine the functional interaction between enhancers and promoters are of decisive importance in the development of organisms. Mammals and the model animal Drosophila have homologous key architectural proteins and similar mechanisms in the organization of chromosome architecture. This review describes the current progress in understanding the mechanisms of the formation and regulation of long-range interactions between enhancers and promoters at three well-studied key regulatory loci in Drosophila.


Assuntos
Proteínas de Drosophila , Drosophila , Animais , Drosophila/genética , Drosophila/metabolismo , Regiões Promotoras Genéticas , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/genética , Mamíferos/metabolismo
9.
Sensors (Basel) ; 22(23)2022 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-36502198

RESUMO

In this study, a non-linear hue-wavelength (H-W) curve was investigated from 400 to 650 nm. To date, no study has reported on H-W relationship measurements, especially down to the 400 nm region. A digital camera mounted with complementary metal oxide semiconductor (CMOS) image sensors was used. The obtained digital images of the sample were based on an RGB-based imaging analysis rather than multispectral imaging or hyperspectral imaging. In this study, we focused on the raw image to reconstruct the H-W curve. In addition, several factors affecting the digital image, such as exposure time or international organization for standardization (ISO), were investigated. In addition, cross check of the H-W response using laser was performed. We expect that our method will be useful as an auxiliary method in the future for obtaining the fluor emission wavelength information.


Assuntos
Processamento de Imagem Assistida por Computador , Semicondutores , Processamento de Imagem Assistida por Computador/métodos , Óxidos
10.
Sensors (Basel) ; 22(5)2022 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-35271204

RESUMO

Concern for the security of embedded systems that implement IoT devices has become a crucial issue, as these devices today support an increasing number of applications and services that store and exchange information whose integrity, privacy, and authenticity must be adequately guaranteed. Modern lattice-based cryptographic schemes have proven to be a good alternative, both to face the security threats that arise as a consequence of the development of quantum computing and to allow efficient implementations of cryptographic primitives in resource-limited embedded systems, such as those used in consumer and industrial applications of the IoT. This article describes the hardware implementation of parameterized multi-unit serial polynomial multipliers to speed up time-consuming operations in NTRU-based cryptographic schemes. The flexibility in selecting the design parameters and the interconnection protocol with a general-purpose processor allow them to be applied both to the standardized variants of NTRU and to the new proposals that are being considered in the post-quantum contest currently held by the National Institute of Standards and Technology, as well as to obtain an adequate cost/performance/security-level trade-off for a target application. The designs are provided as AXI4 bus-compliant intellectual property modules that can be easily incorporated into embedded systems developed with the Vivado design tools. The work provides an extensive set of implementation and characterization results in devices of the Xilinx Zynq-7000 and Zynq UltraScale+ families for the different sets of parameters defined in the NTRUEncrypt standard. It also includes details of their plug and play inclusion as hardware accelerators in the C implementation of this public-key encryption scheme codified in the LibNTRU library, showing that acceleration factors of up to 3.1 are achieved when compared to pure software implementations running on the processing systems included in the programmable devices.

11.
Dokl Biochem Biophys ; 506(1): 210-214, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36303054

RESUMO

Polycomb group (PcG) repressors and Trithorax group (TrxG) activators of transcription are essential for the proper development and maintenance of gene expression profiles in multicellular organisms. In Drosophila, PcG/TrxG proteins interact with DNA elements called PRE (Polycomb response elements). We have previously shown that the repressive activity of inactive PRE in transgenes can be induced by architectural protein-binding sites. It was shown that the induction of repression is associated with the recruitment of PcG/TrxG proteins, including the DNA-binding factors Pho and Combgap. In the present study, we tested the association of the two other PRE DNA-binding factors, GAF and Psq, with bxdPRE in the presence and absence of sites for architectural proteins. As a result, it was shown that both factors can be efficiently recruited to the bxdPRE only in the presence of adjacent binding sites for architectural proteins Su(Hw), CTCF, or Pita.


Assuntos
Cromatina , Proteínas de Drosophila , Animais , Cromatina/genética , Cromatina/metabolismo , Ligação Proteica , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Complexo Repressor Polycomb 1/genética , Complexo Repressor Polycomb 1/metabolismo , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Proteínas do Grupo Polycomb/genética , Sítios de Ligação , Drosophila/genética , DNA , Drosophila melanogaster/genética
12.
Chromosoma ; 129(3-4): 255-274, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-33140220

RESUMO

Insulator proteins orchestrate the three-dimensional organization of the genome. Insulators function by facilitating communications between regulatory sequences and gene promoters, allowing accurate gene transcription regulation during embryo development and cell differentiation. However, the role of insulator proteins beyond genome organization and transcription regulation remains unclear. Suppressor of Hairy wing [Su(Hw)] is a Drosophila insulator protein that plays an important function in female oogenesis. Here we find that su(Hw) has an unsuspected role in genome stability during cell differentiation. We show that su(Hw) mutant developing egg chambers have poorly formed microtubule organization centers (MTOCs) in the germarium and display mislocalization of the anterior/posterior axis specification factor gurken in later oogenesis stages. Additionally, eggshells from partially rescued su(Hw) mutant female germline exhibit dorsoventral patterning defects. These phenotypes are very similar to phenotypes found in the important class of spindle mutants or in piRNA pathway mutants in Drosophila, in which defects generally result from the failure of germ cells to repair DNA damage. Similarities between mutations in su(Hw) and spindle and piRNA mutants are further supported by an excess of DNA damage in nurse cells, and because Gurken localization defects are partially rescued by mutations in the ATR (mei-41) and Chk1 (grapes) DNA damage response genes. Finally, we also show that su(Hw) mutants produce an elevated number of chromosome breaks in dividing neuroblasts from larval brains. Together, these findings suggest that Su(Hw) is necessary for the maintenance of genome integrity during Drosophila development, in both germline and dividing somatic cells.


Assuntos
Proteínas de Drosophila/genética , Drosophila/genética , Instabilidade Genômica , Elementos Isolantes , Fenótipo , Animais , Feminino , Genótipo , Oogênese/genética , Ovário/citologia , Ovário/metabolismo
13.
Int J Mol Sci ; 22(22)2021 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-34830280

RESUMO

Most of the known Drosophila architectural proteins interact with an important cofactor, CP190, that contains three domains (BTB, M, and D) that are involved in protein-protein interactions. The highly conserved N-terminal CP190 BTB domain forms a stable homodimer that interacts with unstructured regions in the three best-characterized architectural proteins: dCTCF, Su(Hw), and Pita. Here, we identified two new CP190 partners, CG4730 and CG31365, that interact with the BTB domain. The CP190 BTB resembles the previously characterized human BCL6 BTB domain, which uses its hydrophobic groove to specifically associate with unstructured regions of several transcriptional repressors. Using GST pull-down and yeast two-hybrid assays, we demonstrated that mutations in the hydrophobic groove strongly affect the affinity of CP190 BTB for the architectural proteins. In the yeast two-hybrid assay, we found that architectural proteins use various mechanisms to improve the efficiency of interaction with CP190. Pita and Su(Hw) have two unstructured regions that appear to simultaneously interact with hydrophobic grooves in the BTB dimer. In dCTCF and CG31365, two adjacent regions interact simultaneously with the hydrophobic groove of the BTB and the M domain of CP190. Finally, CG4730 interacts with the BTB, M, and D domains of CP190 simultaneously. These results suggest that architectural proteins use different mechanisms to increase the efficiency of interaction with CP190.


Assuntos
Fator de Ligação a CCCTC/metabolismo , Proteínas de Ligação a DNA/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/metabolismo , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas Nucleares/metabolismo , Proteínas Repressoras/metabolismo , Transdução de Sinais/genética , Fatores de Transcrição/metabolismo , Animais , Cromatina/metabolismo , Proteínas de Drosophila/química , Interações Hidrofóbicas e Hidrofílicas , Proteínas Associadas aos Microtúbulos/química , Mutação , Proteínas Nucleares/química , Ligação Proteica/genética , Domínios e Motivos de Interação entre Proteínas/genética , Mapas de Interação de Proteínas/genética , Multimerização Proteica/genética
14.
Sensors (Basel) ; 20(7)2020 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-32230946

RESUMO

In the context of growing the adoption of advanced sensors and systems for active vehicle safety and driver assistance, an increasingly important issue is the security of the information exchanged between the different sub-systems of the vehicle. Random number generation is crucial in modern encryption and security applications as it is a critical task from the point of view of the robustness of the security chain. Random numbers are in fact used to generate the encryption keys to be used for ciphers. Consequently, any weakness in the key generation process can potentially leak information that can be used to breach even the strongest cipher. This paper presents the architecture of a high performance Random Number Generator (RNG) IP-core, in particular a Cryptographically Secure Pseudo-Random Number Generator (CSPRNG) IP-core, a digital hardware accelerator for random numbers generation which can be employed for cryptographically secure applications. The specifications used to develop the proposed project were derived from dedicated literature and standards. Subsequently, specific architecture optimizations were studied to achieve better timing performance and very high throughput values. The IP-core has been validated thanks to the official NIST Statistical Test Suite, in order to evaluate the degree of randomness of the numbers generated in output. Finally the CSPRNG IP-core has been characterized on relevant Field Programmable Gate Array (FPGA) and ASIC standard-cell technologies.

15.
Field Crops Res ; 259: 107961, 2020 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-34149151

RESUMO

In many parts of Eastern India that have a very high prevalence of rural poverty and food insecurity, the prevailing rice establishment practice of 'beushening' is characterized by low yields and modest profitability, while labor and energy inputs are high. Beushening consists of broadcasting ungerminated rice seed at high rates (>100 kg ha-1) prior to the onset of monsoon rain, followed by ploughing at 4-6 weeks after crop emergence to control weeds with subsequent manual gap filling through seedling redistribution to ensure stand uniformity. Dry-direct seeding of rice (DSR), both drill-DSR and precision broadcast-DSR in combination with integrated weed management (IWM) may offer a pathway for simultaneously reducing costs and markedly increasing productivity. On-farm trials were conducted from 2016 to 2018 in four districts of Odisha (Mayurbhanj, Cuttack, Bhadrak, and Puri) to evaluate the yield and economic performance of dry-DSR (drill and precision broadcast), coupled with herbicide-based IWM strategies, in comparison with conventional beushening. Drill-DSR with IWM increased grain yield by 1.7 t ha-1 in Mayurbhanj and 1.3 t ha-1 in Cuttack, but not in Bhadrak, compared to beushening. The combination of increased yield and lower variable cost in drill-DSR increased net benefit by 550, 395, and 166 US$ ha-1 in Mayurbhanj, Cuttack, and Bhadrak, respectively. For farmers without access to seed drills, precision broadcast-DSR with IWM increased yields by 0.91, 1.22 and 0.60 t ha-1, and net benefits by 270, 312, and 188 US$ ha-1 in Mayurbhanj, Puri, and Bhadrak, respectively. Among the IWM practices evaluated in dry-DSR, application of pretilachlor + safener @ 500 g ai ha-1 as pre-emergence, followed by bispyribac-sodium @ 20 g ai ha-1 at 15-25 days after sowing as post-emergence, and then one spot hand weeding at 30-35 days after sowing was effective in controlling weeds. These results suggest that rice yield gaps in eastern India can be reduced, and farmers' income from rice can be increased by more than 50 % by replacing beushening with drill-DSR or precision broadcast-DSR. The results could be applicable to approximately 6.4 million ha of lowland rice where beushening is currently practiced in Eastern India.

16.
J Pharmacol Sci ; 140(3): 284-290, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-31481348

RESUMO

The human ether-a-go-go-related gene (hERG) encodes the K+ channel that carries the rapid component of the delayed rectifier current in the human heart. Reduction of hERG activity induced by gene mutations or pharmacological inhibition is responsible for the type 2 form of long QT syndrome in patients which can develop into ventricular arrhythmia and sudden cardiac death. Therefore, pharmacological activation of hERG may lead to therapeutic potential for cardiac arrhythmias. In this study we characterized a small and novel compound, N-(2-(tert-butyl)phenyl)-6-(4-chlorophenyl)-4-(trifluoromethyl) nicotinamide, HW-0168, that exhibits potent activation of hERG channel with an EC50 of 0.41 ± 0.2 µM. Using whole-cell patch clamp recording of HEK293 cells stably expressed hERG channels, we found that HW-0168 dramatically increased current amplitude about 2.5 folds and slowed down current inactivation about 4 folds. HW-0168 shifted the voltage-dependent channel activation to hyperpolarizing direction about 3.7 mV and the voltage-dependent channel inactivation to depolarizing direction about 9.4 mV. In addition, recording of guinea-pig ventricular cells confirmed that HW-0168 shortened the action potential duration. In conclusion, we identified a novel hERG channel activator HW-0168 that can be used for studying the physiological role of hERG in cardiac myocytes and may be beneficial for treating long QT syndrome.


Assuntos
Canais de Potássio Éter-A-Go-Go/metabolismo , Miócitos Cardíacos/efeitos dos fármacos , Miócitos Cardíacos/metabolismo , Bibliotecas de Moléculas Pequenas/farmacologia , Potenciais de Ação/efeitos dos fármacos , Animais , Arritmias Cardíacas/tratamento farmacológico , Arritmias Cardíacas/metabolismo , Linhagem Celular , Cobaias , Células HEK293 , Ventrículos do Coração/efeitos dos fármacos , Ventrículos do Coração/metabolismo , Humanos , Síndrome do QT Longo/tratamento farmacológico , Síndrome do QT Longo/metabolismo , Masculino
17.
Chromosoma ; 126(1): 165-178, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-26894919

RESUMO

MYST family histone acetyltransferases play important roles in gene regulation. Here, we have characterized the Drosophila MYST histone acetyltransferase (HAT) encoded by cg1894, whose closest homolog is Drosophila MOF, and which we have termed MYST5. We found it localized to a large number of interbands as well as to the telomeres of polytene chromosomes, and it showed strong colocalization with the interband protein Z4/Putzig and RNA polymerase II. Accordingly, genome-wide location analysis by ChIP-seq showed co-occurrence of MYST5 with the Z4-interacting partner Chriz/Chromator. Interestingly, MYST5 bound to the promoter of actively transcribed genes, and about half of MYST5 sites colocalized with the transcription factor DNA replication-related element-binding factor (DREF), indicating a role for MYST5 in gene expression. Moreover, we observed substantial overlap of MYST5 binding with that of the insulator proteins CP190, dCTCF, and BEAF-32, which mediate the organization of the genome into functionally distinct topological domains. Altogether, our data suggest a broad role for MYST5 both in gene-specific transcriptional regulation and in the organization of the genome into chromatin domains, with the two roles possibly being functionally interconnected.


Assuntos
Proteínas de Ligação a DNA/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila/genética , Drosophila/metabolismo , Histona Acetiltransferases/metabolismo , Elementos Isolantes , Fatores de Transcrição/metabolismo , Animais , Sítios de Ligação , Regulação da Expressão Gênica , Masculino , Mitocôndrias/metabolismo , Cromossomos Politênicos/genética , Cromossomos Politênicos/metabolismo , Regiões Promotoras Genéticas , Ligação Proteica , Transporte Proteico , Espermatócitos/metabolismo , Espermatogênese/genética , Telômero/genética , Telômero/metabolismo
18.
Chromosoma ; 126(3): 431-441, 2017 06.
Artigo em Inglês | MEDLINE | ID: mdl-27300555

RESUMO

Transvection is a phenomenon of interallelic communication whereby enhancers of one allele can activate a promoter located on the homologous chromosome. It has been shown for many independent genes that enhancers preferentially act on the cis-linked promoter, but deletion of this promoter allows the enhancers to act in trans. Here, we tested whether this cis-preference in the enhancer-promoter interaction could be reconstituted outside of the natural position of a gene. The yellow gene was chosen as a model system. Transgenic flies were generated that carried the yellow gene modified by the inclusion of the strategically placed recognition sites for the Cre and Flp recombinases. To facilitate transvection, an endogenous Su(Hw) insulator (1A2) or gypsy insulator was placed behind the yellow gene. Independent action of the recombinases produced a pair of derivative alleles, one containing the promoter-driven yellow gene, and the other, the enhancers and promoter that failed to produce a functional yellow protein. As a result, we observed strong transvection in many genomic regions, suggesting that a complete cis-preference of the enhancer-promoter interactions is mainly restricted to genes in their natural loci.


Assuntos
Proteínas de Drosophila/genética , Drosophila melanogaster/genética , Elementos Facilitadores Genéticos , Regiões Promotoras Genéticas , Ativação Transcricional , Alelos , Animais , Cromossomos de Insetos/genética , Proteínas de Drosophila/metabolismo , Regulação da Expressão Gênica
19.
Appl Microbiol Biotechnol ; 101(17): 6705-6712, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28755262

RESUMO

The effects of fungal elicitor on the physicochemical and microbial responses of Streptomyces natalensis HW-2 were investigated. The results showed that the elicitor could decrease dry cell weight (DCW) by 17.7% and increase the utilization of glucose, while the curve of pH was not obviously altered. The elicitor enhanced the yield of natamycin from 1.33 to 2.49 g/L. The morphology of the colony and the mycelium treated with elicitor showed significant differences from that of control. The level of intracellular reactive oxygen species (ROS) increased to 333.8 ng/L, which was a twofold increase comparing with the control. The concentration of Ca2+ reached 421.1 nmol/L, which increased by 32.8% after the addition of the elicitor. The activities of pyruvic carboxylase and phosphoenol pyruvate carboxylase were enhanced by 27.8 and 11.9%, respectively, while citrate synthase activity decreased by 23.1% in comparison with the control.


Assuntos
Proteínas Fúngicas/farmacologia , Natamicina/biossíntese , Streptomyces/efeitos dos fármacos , Streptomyces/metabolismo , Cálcio/análise , Citrato (si)-Sintase/análise , Citrato (si)-Sintase/efeitos dos fármacos , Meios de Cultura/química , Meios de Cultura/farmacologia , Glucose/metabolismo , Concentração de Íons de Hidrogênio , Técnicas Microbiológicas , Piruvato Carboxilase/análise , Piruvato Carboxilase/efeitos dos fármacos , Espécies Reativas de Oxigênio/metabolismo
20.
Dev Biol ; 403(1): 57-68, 2015 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-25882370

RESUMO

Chromatin insulators orchestrate gene transcription during embryo development and cell differentiation by stabilizing interactions between distant genomic sites. Mutations in genes encoding insulator proteins are generally lethal, making in vivo functional analyses of insulator proteins difficult. In Drosophila, however, mutations in the gene encoding the Suppressor of Hairy wing insulator protein [Su(Hw)] are viable and female sterile, providing an opportunity to study insulator function during oocyte development. Whereas previous reports suggest that the function of Su(Hw) in oogenesis is independent of its insulator activity, many aspects of the role of Su(Hw) in Drosophila oogenesis remain unexplored. Here we show that mutations in su(Hw) result in smaller ring canal lumens and smaller outer ring diameters, which likely obstruct molecular and vesicle passage from nurse cells to the oocyte. Fluorescence microscopy reveals that lack of Su(Hw) leads to excess accumulation of Kelch (Kel) and Filament-actin (F-actin) proteins in the ring canal structures of developing egg chambers. Furthermore, we found that misexpression of the Src oncogene at 64B (Src64B) may cause ring canal development defects as microarray analysis and real-time RT-PCR revealed there is a three fold decrease in Src64B expression in su(Hw) mutant ovaries. Restoration of Src64B expression in su(Hw) mutant female germ cells rescued the ring phenotype but did not restore fertility. We conclude that loss of su(Hw) affects expression of many oogenesis related genes and down-regulates Src64B, resulting in ring canal defects potentially contributing to obstruction of molecular flow and an eventual failure of egg chamber organization.


Assuntos
Proteínas de Drosophila/genética , Drosophila melanogaster/embriologia , Regulação da Expressão Gênica no Desenvolvimento/genética , Oogênese/genética , Proteínas Repressoras/genética , Actinas/metabolismo , Animais , Diferenciação Celular , Proteínas de Drosophila/biossíntese , Proteínas de Drosophila/metabolismo , Feminino , Elementos Isolantes/genética , Proteínas dos Microfilamentos/metabolismo , Ovário/embriologia , Proteínas Tirosina Quinases/biossíntese , Proteínas Proto-Oncogênicas/biossíntese , Proteínas Repressoras/metabolismo
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