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1.
Int Microbiol ; 27(1): 277-290, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37316617

RESUMO

BACKGROUND: Polymyxin B is considered a last-line therapeutic option against multidrug-resistant gram-negative bacteria, especially in COVID-19 coinfections or other serious infections. However, the risk of antimicrobial resistance and its spread to the environment should be brought to the forefront. METHODS: Pandoraea pnomenusa M202 was isolated under selection with 8 mg/L polymyxin B from hospital sewage and then was sequenced by the PacBio RS II and Illumina HiSeq 4000 platforms. Mating experiments were performed to evaluate the transfer of the major facilitator superfamily (MFS) transporter in genomic islands (GIs) to Escherichia coli 25DN. The recombinant E. coli strain Mrc-3 harboring MFS transporter encoding gene FKQ53_RS21695 was also constructed. The influence of efflux pump inhibitors (EPIs) on MICs was determined. The mechanism of polymyxin B excretion mediated by FKQ53_RS21695 was investigated by Discovery Studio 2.0 based on homology modeling. RESULTS: The MIC of polymyxin B for the multidrug-resistant bacterial strain P. pnomenusa M202, isolated from hospital sewage, was 96 mg/L. GI-M202a, harboring an MFS transporter-encoding gene and conjugative transfer protein-encoding genes of the type IV secretion system, was identified in P. pnomenusa M202. The mating experiment between M202 and E. coli 25DN reflected the transferability of polymyxin B resistance via GI-M202a. EPI and heterogeneous expression assays also suggested that the MFS transporter gene FKQ53_RS21695 in GI-M202a was responsible for polymyxin B resistance. Molecular docking revealed that the polymyxin B fatty acyl group inserts into the hydrophobic region of the transmembrane core with Pi-alkyl and unfavorable bump interactions, and then polymyxin B rotates around Tyr43 to externally display the peptide group during the efflux process, accompanied by an inward-to-outward conformational change in the MFS transporter. Additionally, verapamil and CCCP exhibited significant inhibition via competition for binding sites. CONCLUSIONS: These findings demonstrated that GI-M202a along with the MFS transporter FKQ53_RS21695 in P. pnomenusa M202 could mediate the transmission of polymyxin B resistance.


Assuntos
Burkholderiaceae , Escherichia coli , Polimixina B , Polimixina B/farmacologia , Escherichia coli/genética , Ilhas Genômicas , Simulação de Acoplamento Molecular , Esgotos , Proteínas de Membrana Transportadoras/genética , Antibacterianos/farmacologia , Testes de Sensibilidade Microbiana
2.
Int Microbiol ; 2024 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-38900217

RESUMO

Chlorobenzene (CB), extensively used in industrial processes, has emerged as a significant contaminant in soil and groundwater. The eco-friendly and cost-effective microbial remediation has been increasingly favored to address this environmental challenge. In this study, a degrading bacterium was isolated from CB-contaminated soil at a pesticide plant, identified as Pandoraea sp. XJJ-1 (CCTCC M 2021057). This strain completely degraded 100 mg·L-1 CB and showed extensive degradability across a range of pH (5.0-9.0), temperature (10-37 °C), and CB concentrations (100-600 mg·L-1). Notably, the degradation efficiency was 85.2% at 15 °C, and the strain could also degrade six other aromatic hydrocarbons, including benzene, toluene, ethylbenzene, and xylene (o-, m-, p-). The metabolic pathway of CB was inferred using ultraperformance liquid chromatography, gas chromatography-mass spectrometry, and genomic analysis. In strain XJJ-1, CB was metabolized to o-chlorophenol and 3-chloroxychol by CB monooxygenase, followed by ortho-cleavage by the action of 3-chlorocatechol 1,2-dioxygenase. Moreover, the presence of the chlorobenzene monooxygenation pathway metabolism in strain XJJ-1 is reported for the first time in Pandoraea. As a bacterium with low-temperature resistance and composite pollutant degradation capacity, strain XJJ-1 has the potential application prospects in the in-situ bioremediation of CB-contaminated sites.

3.
Emerg Infect Dis ; 29(11): 2229-2237, 2023 11.
Artigo em Inglês | MEDLINE | ID: mdl-37877517

RESUMO

Pandoraea spp. are gram-negative, nonfermenting rods mainly known to infect patients with cystic fibrosis (CF). Outbreaks have been reported from several CF centers. We report a Pandoraea spp. outbreak comprising 24 non-CF patients at a large university hospital and a neighboring heart center in Germany during July 2019-December 2021. Common features in the patients were critical illness, invasive ventilation, antimicrobial pretreatment, and preceding surgery. Complicated and relapsing clinical courses were observed in cases with intraabdominal infections but not those with lower respiratory tract infections. Genomic analysis of 15 isolates identified Pandoraea commovens as the genetically most similar species and confirmed the clonality of the outbreak strain, designated P. commovens strain LB-19-202-79. The strain exhibited resistance to most antimicrobial drugs except ampicillin/sulbactam, imipenem, and trimethoprim/sulfamethoxazole. Our findings suggest Pandoraea spp. can spread among non-CF patients and underscore that clinicians and microbiologists should be vigilant in detecting and assessing unusual pathogens.


Assuntos
Anti-Infecciosos , Burkholderiaceae , Fibrose Cística , Humanos , Fibrose Cística/complicações , Fibrose Cística/epidemiologia , Bactérias Gram-Negativas , Combinação Trimetoprima e Sulfametoxazol , Burkholderiaceae/genética , Alemanha/epidemiologia
4.
BMC Infect Dis ; 22(1): 529, 2022 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-35672730

RESUMO

BACKGROUND: Pandoraea species are multidrug-resistant glucose-nonfermenting gram-negative bacilli that are usually isolated from patients with cystic fibrosis (CF) and from water and soil. Reports of diseases, including bloodstream infections, caused by Pandoraea spp. in non-CF patients are rare, and the clinical and microbiological characteristics are unclear. The identification of Pandorea spp. is limited by conventional microbiological methods and may be misidentified as other species owing to overlapping biochemical profiles. Here, we report the first case of obstructive cholangitis with bacteremia caused by Pandoraea apista in a patient with advanced colorectal cancer. A 61-year-old man with advanced colorectal cancer who underwent right nephrectomy for renal cell carcinoma 4 years earlier with well-controlled diabetes mellitus was admitted to our hospital with fever for 2 days. The last chemotherapy (regorafenib) was administered approximately 3 weeks ago, and an endoscopic ultrasound-guided hepaticogastrostomy was performed 2 weeks ago under hospitalization for obstructive jaundice. Two days prior, he presented with fever with chills. He was treated with piperacillin-tazobactam for obstructive cholangitis and showed improvement but subsequently presented with exacerbation. Bacterial isolates from the blood and bile samples were identified as P. apista using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and 16S ribosomal RNA sequencing. Based on the susceptibility results of the isolates, he was successfully treated with oral trimethoprim-sulfamethoxazole 160 mg/800 mg/day for 14 days for P. apista infection. CONCLUSIONS: Pandoraea species are often misidentified. Therefore, multiple approaches should be used to identify them, and decisions regarding antimicrobial treatment should be based on actual in vitro susceptibility. Only seven cases of Pandoraea spp. bloodstream infections have been reported, and we report the first case of cholangitis with bacteremia.


Assuntos
Bacteriemia , Colangite , Neoplasias Colorretais , Fibrose Cística , Sepse , Bacteriemia/diagnóstico , Bacteriemia/tratamento farmacológico , Burkholderiaceae , Colangite/tratamento farmacológico , Fibrose Cística/microbiologia , Humanos , Masculino , Pessoa de Meia-Idade , RNA Ribossômico , RNA Ribossômico 16S/genética , Análise de Sequência de RNA , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos
5.
Glycoconj J ; 38(2): 135-144, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33048281

RESUMO

Pandoraea sp. is an emerging Gram-negative pathogen in cystic fibrosis causing severe and persistent inflammation and damage of the lungs. The molecular mechanisms underlying the high pathogenicity of Pandoraea species are still largely unknown. As Gram-negatives, Pandoraea sp. express lipopolysaccharides (LPS) whose recognition by the host immune system triggers an inflammatory response aimed at the bacterial eradication from the infected tissues. The degree of the inflammatory response strongly relies on the fine structure of the LPS and, in particular, of its glycolipid moiety, i.e. the lipid A. Here we report the structure of the lipid A isolated from the LPS of a chronic strain of P. pulmonicola (RL 8228), one of the most virulent identified so far among the Pandoraea species. Our data demonstrated that the examined chronic strain produces a smooth-type LPS with a complex mixture of hypoacylated lipid A species displaying, among other uncommon characteristics, the 2-hydroxylation of some of the acyl chains and the substitution by an additional glucosamine on one or both the phosphate groups.


Assuntos
Burkholderiaceae/metabolismo , Fibrose Cística/microbiologia , Lipídeo A/química , Lipídeo A/metabolismo , Acilação , Burkholderiaceae/isolamento & purificação , Burkholderiaceae/patogenicidade , Humanos , Lipídeo A/isolamento & purificação , Lipopolissacarídeos/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
6.
Eur J Clin Microbiol Infect Dis ; 40(11): 2403-2406, 2021 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-33830365

RESUMO

A 26-year-old girl with a longstanding colonization by Pandoraea nosoerga underwent liver-lung transplantation for cystic fibrosis (CF) in 2018. Her brother also suffering from CF was also colonized by P. nosoerga. Despite appropriate perioperative antibiotic therapy, she had post-transplant bacteremic pneumonia caused by extensively drug-resistant P. nosoerga. Drug repurposing was used to optimize treatment options. The cause of post-transplant contamination was studied by comparative whole-genome sequencing including pre- and post-transplant strains and her brother's strains. Post-transplant contamination appeared to be due to her own pre-transplant strain, emphasizing the urgent need to study and implement effective decontamination protocols before transplantation.


Assuntos
Fibrose Cística/cirurgia , Infecções por Bactérias Gram-Negativas/microbiologia , Transplante de Fígado/efeitos adversos , Transplante de Pulmão/efeitos adversos , Complicações Pós-Operatórias/microbiologia , Adulto , Antibacterianos/uso terapêutico , Burkholderiaceae/genética , Burkholderiaceae/isolamento & purificação , Burkholderiaceae/fisiologia , Evolução Fatal , Feminino , Infecções por Bactérias Gram-Negativas/tratamento farmacológico , Infecções por Bactérias Gram-Negativas/mortalidade , Humanos , Fígado/cirurgia , Pulmão/microbiologia , Pulmão/cirurgia , Complicações Pós-Operatórias/tratamento farmacológico , Complicações Pós-Operatórias/mortalidade
7.
Environ Res ; 201: 111594, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34186080

RESUMO

This research was aimed to evaluate the phytochemical profile, bactericidal activity of Hygrophila spinosa against multidrug resistant Pandoraea sputorum and assess their antioxidant competence against various radicals and studied their hepatoprotective and nephroprotective activity on HepG2 and HEK 293 cell line. The results showed that the methanol extract has various phytochemical components with reasonable quantity. Fortunately, the multidrug-resistant P. sputorum was sensitive (22.8 ± 0.2 mm of the zone of inhibition) at 15 mg mL-1 concentration of methanol extract. The higher concentration of phenolic and other phytochemical components, showed significant antioxidant activity against ferric, DPPH, hydroxyl, and ABTS radicals, with IC50 values of 71.09, 64.333, 91.157, and 104.931 g mL-1, respectively. Surprisingly, the methanol extract possesses hepato and nephroprotective activity against CCl4 and cisplatin-induced cytotoxicity on HepG2 and HEK 293 cell lines, respectively. It maintains the cell viability as up to 90.48% and 90.35% of HepG2 and EK 293 cell line at the concentration of 20 µg mL-1. The FTIR analysis states that the methanol extract possesses a significant functional group responsible for these multi-potential activities. These results suggest that, the methanol extract of H. spinosa might contain the most significant bioactive components with outstanding medicinal properties.


Assuntos
Acanthaceae , Antibacterianos , Burkholderiaceae/efeitos dos fármacos , Extratos Vegetais , Substâncias Protetoras/farmacologia , Acanthaceae/química , Antibacterianos/farmacologia , Farmacorresistência Bacteriana Múltipla , Células HEK293 , Células Hep G2 , Humanos , Rim/efeitos dos fármacos , Fígado/efeitos dos fármacos , Metanol , Extratos Vegetais/farmacologia
8.
Bioprocess Biosyst Eng ; 43(11): 1951-1960, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-32500436

RESUMO

In this study, the roles of extracellular polymeric substances (EPSs) excreted by Pandoraea sp. XY-2 in the removal of tetracycline (TC) were investigated. In the early stage, TC in the solution was mainly removed by the adsorption of EPSs, which accounted for 20% of TC. Thereafter, large amount of TC was transported into the intracellular and biodegraded. EPSs was extracted and the contents of polyprotein and polysaccharides reached their maximum values (30.84 mg/g and 11.15 mg/g) in the first four days. Fourier transform infrared spectroscopy analysis revealed that hydroxyl, methylidyne, methylene and amide I groups in EPSs participated in the adsorption of TC. Furthermore, three-dimensional excitation-emission matrix fluorescence spectroscopy analysis revealed that TC caused the quenching of EPSs fluorescent groups. The quenching mechanism was attributed to static quenching and protein-like substances in EPSs from Pandoraea sp. XY-2 dominated the TC adsorption process. Bioinformatic analysis of Pandoraea sp. XY-2 genome identified multiple genes involved in exopolysaccharide synthesis and EPSs formation. The insights gained in this study might provide a better understanding about the adsorption process of EPSs in tetracycline-contaminated environment.


Assuntos
Burkholderiaceae/metabolismo , Matriz Extracelular de Substâncias Poliméricas/química , Polímeros/química , Poliproteínas/química , Polissacarídeos/química , Espectrometria de Fluorescência/métodos , Tetraciclina/química , Tetraciclina/isolamento & purificação , Poluentes Químicos da Água/isolamento & purificação , Adsorção , Antibacterianos/química , Biotecnologia/métodos , Metano/análogos & derivados , Esgotos/química , Espectroscopia de Infravermelho com Transformada de Fourier , Fatores de Tempo , Poluentes Químicos da Água/química , Purificação da Água
9.
J Environ Manage ; 272: 111115, 2020 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-32738758

RESUMO

Aerobic granular sludge (AGS) is a type of biofilm with good sedimentation and density, high biomass, high organic load tolerance and toxicity resistance. Oxytetracycline (OTC) is an antibiotic widely used in livestock and aquaculture, and its low absorption and high residue bring many risks and harms to the ecological environment. In this study, an OTC-degrading strain TJ3 was isolated from AGS and identified as Pandoraea sp. The biodegradation characteristics of OTC by strain TJ3 under different environmental conditions were also investigated. The results showed that the optimal initial pH value and temperature for the culture strain were 6.0 and 30 °C, respectively. At an inoculation dose of 6% (v/v), the removal rate of OTC by strain TJ3 was remarkable (59.4%). Furthermore, when the sodium acetate was present as an additional substrate, the biomass and the OTC removal rate of strain TJ3 were improved. The biodegradability of strain TJ3 to OTC was proved by LC-QTOF/MS, and two possible biotransformation products, i.e. m/z 416 and 219, were identified. In the bioaugmentation experiments of AGS by strain TJ3, the average OTC removal rate was 92.89% after the stable operation of bioreactor. The chemical oxygen demand (COD), ammonium nitrogen (NH4+-N) and total phosphorus (TP) were efficiently removed. The microbial community structure had significantly changed at the genus level, and the relative abundance of Zoogloea, Pandoraea, Cloacibacterium and Desulfovibrio increased evidently. These results implied that the OTC removal performance and the structural stability of AGS were improved. In this study, Pandoraea sp. TJ3 was applied to removal OTC for the first time, and results showed that Pandoraea sp. TJ3 may be a new auxiliary bacterial resource for the biodegradation of OTC and a potential candidate in the treatment of antibiotic wastewater.


Assuntos
Oxitetraciclina , Esgotos , Aerobiose , Bactérias , Análise da Demanda Biológica de Oxigênio , Reatores Biológicos , Nitrogênio , Eliminação de Resíduos Líquidos
10.
Int J Syst Evol Microbiol ; 69(3): 645-651, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30676309

RESUMO

Pandoraea species have been isolated from diverse environmental samples and are emerging important respiratory pathogens, particularly in people with cystic fibrosis (CF). In the present study, two bacterial isolates initially recovered from consecutive sputum samples collected from a CF patient and identified as Pandoraea pnomenusa underwent a polyphasic taxonomic analysis. The isolates were found to be Gram-negative, facultative anaerobic motile bacilli and subsequently designated as strains 6399T (=LMG29626T=DSM103228T) and 7641 (=LMG29627=DSM103229), respectively. Phylogenetic analysis based on 16S rRNA and gyrB gene sequences revealed that 6399T and 7641 formed a distinct phylogenetic lineage within the genus Pandoraea. Genome sequence comparison analysis indicated that strains 6399T and 7641 are clonal and share 100 % similarity, however, similarity to other type strains (ANIb 73.2-88.8 %, ANIm 83.5-89.9 % and OrthoANI 83.2-89.3 %) indicates that 6399T and 7641 do not belong to any of the reported type species. The major cellular fatty acids of 6399T were C16 : 0 (32.1 %) C17 : 0cyclo (18.7 %) and C18 : 1ω7c (14.5 %), while Q-8 was the only respiratory quinone detected. The major polar lipids identified were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The genomic DNA G+C content of 6399T was 62.9 (mol%). Strain 6399T can be differentiated from other members of Pandoraea by the absence of C19 : 0ω8c cyclo and by the presence of C17 : 0ω8c cyclo. Together our data show that the bacterial strains 6399T and 7641 represent a novel species of the genus Pandoraea, for which the name Pandoraea fibrosis sp. nov. is proposed (type strain 6399T).


Assuntos
Burkholderiaceae/classificação , Filogenia , Escarro/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , Burkholderiaceae/isolamento & purificação , Fibrose Cística , DNA Bacteriano/genética , Ácidos Graxos/química , Genes Bacterianos , Humanos , Fosfolipídeos/química , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Tasmânia , Ubiquinona/química
11.
BMC Infect Dis ; 19(1): 869, 2019 Oct 22.
Artigo em Inglês | MEDLINE | ID: mdl-31640582

RESUMO

BACKGROUND: Pandoraea species is a newly described genus, which is multidrug resistant and difficult to identify. Clinical isolates are mostly cultured from cystic fibrosis (CF) patients. CF is a rare disease in China, which makes Pandoraea a total stranger to Chinese physicians. Pandoraea genus is reported as an emerging pathogen in CF patients in most cases. However, there are few pieces of evidence that confirm Pandoraea can be more virulent in non-CF patients. The pathogenicity of Pandoraea genus is poorly understood, as well as its treatment. The incidence of Pandoraea induced infection in non-CF patients may be underestimated and it's important to identify and understand these organisms. CASE PRESENTATION: We report a 44-years-old man who suffered from pneumonia and died eventually. Before his condition deteriorated, a Gram-negative bacilli was cultured from his sputum and identified as Pandoraea Apista by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS). CONCLUSION: Pandoraea spp. is an emerging opportunistic pathogen. The incidences of Pandoraea related infection in non-CF patients may be underestimated due to the difficulty of identification. All strains of Pandoraea show multi-drug resistance and highly variable susceptibility. To better treatment, species-level identification and antibiotic susceptibility test are necessary.


Assuntos
Burkholderiaceae/patogenicidade , Infecções por Bactérias Gram-Negativas/microbiologia , Hemorragia Intracraniana Traumática/complicações , Pneumonia Bacteriana/microbiologia , Adulto , Burkholderiaceae/isolamento & purificação , China , Fibrose Cística/microbiologia , Infecções por Bactérias Gram-Negativas/diagnóstico por imagem , Infecções por Bactérias Gram-Negativas/tratamento farmacológico , Humanos , Hemorragia Intracraniana Traumática/etiologia , Masculino , Pneumonia Bacteriana/diagnóstico por imagem , Pneumonia Bacteriana/tratamento farmacológico , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Escarro/microbiologia
12.
Parasitology ; 145(10): 1311-1323, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-29895336

RESUMO

Parasitic trypanosomatids diverged from free-living kinetoplastid ancestors several hundred million years ago. These parasites are relatively well known, due in part to several unusual cell biological and molecular traits and in part to the significance of a few - pathogenic Leishmania and Trypanosoma species - as aetiological agents of serious neglected tropical diseases. However, the majority of trypanosomatid biodiversity is represented by osmotrophic monoxenous parasites of insects. In two lineages, novymonads and strigomonads, osmotrophic lifestyles are supported by cytoplasmic endosymbionts, providing hosts with macromolecular precursors and vitamins. Here we discuss the two independent origins of endosymbiosis within trypanosomatids and subsequently different evolutionary trajectories that see entrainment vs tolerance of symbiont cell divisions cycles within those of the host. With the potential to inform on the transition to obligate parasitism in the trypanosomatids, interest in the biology and ecology of free-living, phagotrophic kinetoplastids is beginning to enjoy a renaissance. Thus, we take the opportunity to additionally consider the wider relevance of endosymbiosis during kinetoplastid evolution, including the indulged lifestyle and reductive evolution of basal kinetoplastid Perkinsela.


Assuntos
Evolução Biológica , Kinetoplastida/genética , Simbiose , Trypanosomatina/genética , Biodiversidade , Evolução Molecular , Genoma de Protozoário , Leishmania/genética , Leishmania/fisiologia , Trypanosoma/genética , Trypanosoma/fisiologia
13.
BMC Pulm Med ; 17(1): 33, 2017 02 07.
Artigo em Inglês | MEDLINE | ID: mdl-28173787

RESUMO

BACKGROUND: Pandoraea species are considered emerging pathogens in the context of cystic fibrosis (CF) and are difficult to identify by conventional biochemical methods. These multidrug resistant bacteria remain poorly understood particularly in terms of natural resistance, mechanisms of acquired resistance and impact on the prognosis of the disease and the lung function. Among them, Pandoraea sputorum has been previously described in few cases of CF patients from Spain, Australia, France and United States, underlining the need of more clinical data for a better knowledge of its pathogenicity. This is the first report relating to P. sputorum in a CF patient in Argentina. CASE PRESENTATION: Pandoraea sputorum was identified in a nine-year-old cystic fibrosis patient from Argentina, after treatment failure during an exacerbation. The isolates were successfully identified by combining molecular techniques based on 16S rRNA sequencing and mass spectrometry (MS) methods, after reassessing previous misidentified isolates by conventional methods. After first isolation of P. sputorum, patient's clinical condition worsened but later improved after a change in the treatment. Although isolates showed susceptibility to trimethoprim-sulfamethoxazole and imipenem, in our case, the antibiotic treatment failed in the eradication of P. sputorum. CONCLUSIONS: All combined data showed a chronic colonization with P. sputorum associated to a deterioration of lung function. We noted that the presence of P. sputorum can be underestimated in CF patients and MALDI-TOF MS appears to be a promising means of accurate identification of Pandoraea species.


Assuntos
Burkholderiaceae/genética , Burkholderiaceae/isolamento & purificação , Fibrose Cística/microbiologia , Argentina , Criança , Humanos , Masculino , RNA Ribossômico 16S/genética , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Escarro/microbiologia
15.
J Environ Sci (China) ; 26(5): 1108-17, 2014 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-25079641

RESUMO

A strain Pandoraea pnomenusa LX-1 that uses dichloromethane (DCM) as sole carbon and energy source has been isolated and identified in our laboratory. The optimum aerobic biodegradation of DCM in batch culture was evaluated by response surface methodology. Maximum biodegradation (5.35 mg/(L·hr)) was achieved under cultivation at 32.8°C, pH 7.3, and 0.66% NaCl. The growth and biodegradation processes were well fitted by Haldane's kinetic model, yielding maximum specific growth and degradation rates of 0.133 hr(-1) and 0.856 hr(-1), respectively. The microorganism efficiently degraded a mixture of DCM and coexisting components (benzene, toluene and chlorobenzene). The carbon recovery (52.80%-94.59%) indicated that the targets were predominantly mineralized and incorporated into cell materials. Electron acceptors increased the DCM biodegradation rate in the following order: mixed > oxygen > iron > sulfate > nitrate. The highest dechlorination rate was 0.365 mg Cl(-)/(hr·mg biomass), obtained in the presence of mixed electron acceptors. Removal was achieved in a continuous biotrickling filter at 56%-85% efficiency, with a mineralization rate of 75.2%. Molecular biology techniques revealed the predominant strain as P. pnomenusa LX-1. These results clearly demonstrated the effectiveness of strain LX-1 in treating DCM-containing industrial effluents. As such, the strain is a strong candidate for remediation of DCM coexisting with other organic compounds.


Assuntos
Burkholderiaceae/classificação , Burkholderiaceae/metabolismo , Filtração/métodos , Cloreto de Metileno/metabolismo , Biodegradação Ambiental , Cloreto de Metileno/química , Fatores de Tempo , Eliminação de Resíduos Líquidos , Poluentes Químicos da Água/química , Poluentes Químicos da Água/metabolismo
16.
Microbiol Spectr ; 12(7): e0380923, 2024 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-38809007

RESUMO

Lovebugs appeared in large numbers across a wide area in Seoul, South Korea, in June 2023. The sudden appearance of exotic insects not only discomforts people but also fosters anxiety, as their potential for pathogen transmission would be unknown. In this study, targeted next-generation sequencing (NGS) of the 16S rRNA gene V4 region was performed using iSeq 100 to screen for bacteria in lovebugs. Forty-one lovebugs (20 females and 21 males) collected in Seoul, Korea, were identified as Plecia longiforceps based on mitochondrial cytochrome oxidase subunit 1 sequencing data using PCR. We analyzed the microbiome of the lovebugs and detected 453 species of bacteria. Among all bacteria screened based on NGS, Rickettsia was detected in all samples with an average relative abundance of 80.40%, followed by Pandoraea and Ewingella. Diversity (alpha and beta) between females and males did not differ; however, only Tumebacillus showed a higher relative abundance in females. Sequencing analysis of Rickettsia using a gltA gene-specific primer by PCR showed that it had higher sequence similarity to the Rickettsia symbiont of arthropods than to the spotted fever group rickettsiae. Eleven samples in which Pandoraea was detected by iSeq 100 were confirmed by PCR and exhibited 100% sequence identity to Pandoraea oxalativorans strain DSM 23570. Consequently, the likelihood of pathogen transmission to humans is low. The applied method may play a crucial role in swiftly identifying bacterial species in the event of future outbreaks of exotic insects that may be harmful to humans.IMPORTANCELovebugs have recently emerged in large numbers in Seoul, causing major concern regarding potential health risks. By performing the next-generation sequencing of the 16S rRNA gene V4 region, we comprehensively examined the microbiome of these insects. We identified the presence of numerous bacteria, including Rickettsia and Pandoraea. Reassuringly, subsequent tests confirmed that these detected bacteria were not pathogenic. The present study addresses health concerns related to lovebugs and shows the accuracy and efficiency of our detection technique. Such methods prove invaluable for rapidly identifying bacterial species during potential outbreaks of unfamiliar insects, thereby ensuring public safety.


Assuntos
Bactérias , Microbiota , RNA Ribossômico 16S , Rickettsia , Animais , Microbiota/genética , Feminino , Masculino , RNA Ribossômico 16S/genética , Bactérias/genética , Bactérias/classificação , Bactérias/isolamento & purificação , Rickettsia/genética , Rickettsia/isolamento & purificação , Rickettsia/classificação , Sequenciamento de Nucleotídeos em Larga Escala , República da Coreia , Seul , Filogenia
17.
Microbiol Resour Announc ; 13(4): e0116623, 2024 Apr 11.
Artigo em Inglês | MEDLINE | ID: mdl-38470265

RESUMO

Pandoraea is a pathogenic bacterium naturally resistant to various antimicrobials, including colistin. Here, we report the whole-genome sequence of Pandoraea sputorum, which exhibits high-level multidrug resistance, isolated from a hospitalized patient in Japan.

18.
Front Microbiol ; 15: 1346252, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38486702

RESUMO

The fungus Rhizopus arrhizus (=R. oryzae) is commonly saprotrophic, exhibiting a nature of decomposing organic matter. Additionally, it serves as a crucial starter in food fermentation and can act as a pathogen causing mucormycosis in humans and animals. In this study, two distinct endofungal bacteria (EFBs), associated with individual strains of R. arrhizus, were identified using live/dead staining, fluorescence in situ hybridization, transmission electron microscopy, and 16S rDNA sequencing. The roles of these bacteria were elucidated through antibiotic treatment, pure cultivation, and comparative genomics. The bacterial endosymbionts, Pandoraea sputorum EFB03792 and Mycetohabitans endofungorum EFB03829, were purified from the host fungal strains R. arrhizus XY03792 and XY03829, respectively. Notably, this study marks the first report of Pandoraea as an EFB genus. Compared to its free-living counterparts, P. sputorum EFB03792 exhibited 28 specific virulence factor-related genes, six specific CE10 family genes, and 74 genes associated with type III secretion system (T3SS), emphasizing its pivotal role in invasion and colonization. Furthermore, this study introduces R. arrhizus as a new host for EFB M. endofungorum, with EFB contributing to host sporulation. Despite a visibly reduced genome, M. endofungorum EFB03829 displayed a substantial number of virulence factor-related genes, CE10 family genes, T3SS genes, mobile elements, and significant gene rearrangement. While EFBs have been previously identified in R. arrhizus, their toxin-producing potential in food fermentation has not been explored until this study. The discovery of these two new EFBs highlights their potential for toxin production within R. arrhizus, laying the groundwork for identifying suitable R. arrhizus strains for fermentation processes.

19.
Curr Biol ; 33(13): 2690-2701.e5, 2023 07 10.
Artigo em Inglês | MEDLINE | ID: mdl-37201521

RESUMO

The stability of endosymbiotic associations between eukaryotes and bacteria depends on a reliable mechanism ensuring vertical inheritance of the latter. Here, we demonstrate that a host-encoded protein, located at the interface between the endoplasmic reticulum of the trypanosomatid Novymonas esmeraldas and its endosymbiotic bacterium Ca. Pandoraea novymonadis, regulates such a process. This protein, named TMP18e, is a product of duplication and neo-functionalization of the ubiquitous transmembrane protein 18 (TMEM18). Its expression level is increased at the proliferative stage of the host life cycle correlating with the confinement of bacteria to the nuclear vicinity. This is important for the proper segregation of bacteria into the daughter host cells as evidenced from the TMP18e ablation, which disrupts the nucleus-endosymbiont association and leads to greater variability of bacterial cell numbers, including an elevated proportion of aposymbiotic cells. Thus, we conclude that TMP18e is necessary for the reliable vertical inheritance of endosymbionts.


Assuntos
Trypanosomatina , Trypanosomatina/microbiologia , Bactérias , Simbiose/fisiologia , Eucariotos
20.
Microorganisms ; 11(6)2023 May 31.
Artigo em Inglês | MEDLINE | ID: mdl-37374970

RESUMO

The respiratory tract of lung transplant recipients (LTR) is likely to be colonized with non-fermentative Gram-negative rods. As a consequence of the improvements in molecular sequencing and taxonomy, an increasing number of bacterial species have been described. We performed a review of the literature of bacterial infections in LTR involving non-fermentative Gram-negative rods with exclusion of Pseudomonas aeruginosa, Stenotrophomonas maltophilia, Achromobacter spp. and Burkholderia spp. Overall, non-fermenting GNR were recovered from 17 LTR involving the following genera: Acetobacter, Bordetella, Chryseobacterium, Elizabethkinga, Inquilinus, and Pandoraea. We then discuss the issues raised by these bacteria, including detection and identification, antimicrobial resistance, pathogenesis, and cross-transmission.

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