On the role of parameterization in models with a misspecified nuisance component.

The paper is concerned with inference for a parameter of interest in models that share a common interpretation for that parameter but that may differ appreciably in other respects. We study the general structure of models under which the maximum likelihood estimator of the parameter of interest is consistent under arbitrary misspecification of the nuisance part of the model. A specialization of the general results to matched-comparison and two-groups problems gives a more explicit and easily checkable condition in terms of a notion of symmetric parameterization, leading to a broadening and unification of existing results in those problems. The role of a generalized definition of parameter orthogonality is highlighted, as well as connections to Neyman orthogonality. The issues involved in obtaining inferential guarantees beyond consistency are briefly discussed.

Implicit learning of convective organization explains precipitation stochasticity.

Accurate prediction of precipitation intensity is crucial for both human and natural systems, especially in a warming climate more prone to extreme precipitation. Yet, climate models fail to accurately predict precipitation intensity, particularly extremes. One missing piece of information in traditional climate model parameterizations is subgrid-scale cloud structure and organization, which affects precipitation intensity and stochasticity at coarse resolution. Here, using global storm-resolving simulations and machine learning, we show that, by implicitly learning subgrid organization, we can accurately predict precipitation variability and stochasticity with a low-dimensional set of latent variables. Using a neural network to parameterize coarse-grained precipitation, we find that the overall behavior of precipitation is reasonably predictable using large-scale quantities only; however, the neural network cannot predict the variability of precipitation (R2 ∼ 0.45) and underestimates precipitation extremes. The performance is significantly improved when the network is informed by our organization metric, correctly predicting precipitation extremes and spatial variability (R2 ∼ 0.9). The organization metric is implicitly learned by training the algorithm on a high-resolution precipitable water field, encoding the degree of subgrid organization. The organization metric shows large hysteresis, emphasizing the role of memory created by subgrid-scale structures. We demonstrate that this organization metric can be predicted as a simple memory process from information available at the previous time steps. These findings stress the role of organization and memory in accurate prediction of precipitation intensity and extremes and the necessity of parameterizing subgrid-scale convective organization in climate models to better project future changes of water cycle and extremes.

Development of CHARMM compatible force field parameters and molecular dynamics simulations for the pesticide flupyradifurone.

Flupyradifurone (FLU) is a novel butenolide insecticide with partial agonist activity for insect nicotinic acetylcholine receptors. Its safety for non-target organisms has been questioned in the literature, despite initial claims of its harmlessness. Detailed understanding of its toxicity and related molecular mechanisms remain under discussion. Thus, in this work, an optimized set of CHARMM compatible parameters for FLU is presented. CHARMM General Force Field program was used as a starting point while the non-bonded and bonded parameters were adjusted and optimized to reproduce MP2/6-31G(d) accuracy level results. For the validity assessment of these parameters, infrared spectrum, water-octanol partition coefficient, and normal modes were computed and compared to experimental values found in the literature. Several MD simulations of FLU in water and FLU in complex with an acetylcholine-binding protein were performed to estimate the ability of the optimized parameters to correctly describe its torsional space and reproduce observed crystallographic trends respectively.

Phytoplankton thermal trait parameterization alters community structure and biogeochemical processes in a modeled ocean.

Phytoplankton exhibit diverse physiological responses to temperature which influence their fitness in the environment and consequently alter their community structure. Here, we explored the sensitivity of phytoplankton community structure to thermal response parameterization in a modelled marine phytoplankton community. Using published empirical data, we evaluated the maximum thermal growth rates (µmax ) and temperature coefficients (Q10 ; the rate at which growth scales with temperature) of six key Phytoplankton Functional Types (PFTs): coccolithophores, cyanobacteria, diatoms, diazotrophs, dinoflagellates, and green algae. Following three well-documented methods, PFTs were either assumed to have (1) the same µmax and the same Q10 (as in to Eppley, 1972), (2) a unique µmax but the same Q10 (similar to Kremer et al., 2017), or (3) a unique µmax and a unique Q10 (following Anderson et al., 2021). These trait values were then implemented within the Massachusetts Institute of Technology biogeochemistry and ecosystem model (called Darwin) for each PFT under a control and climate change scenario. Our results suggest that applying a µmax and Q10 universally across PFTs (as in Eppley, 1972) leads to unrealistic phytoplankton communities, which lack diatoms globally. Additionally, we find that accounting for differences in the Q10 between PFTs can significantly impact each PFT's competitive ability, especially at high latitudes, leading to altered modeled phytoplankton community structures in our control and climate change simulations. This then impacts estimates of biogeochemical processes, with, for example, estimates of export production varying by ~10% in the Southern Ocean depending on the parameterization. Our results indicate that the diversity of thermal response traits in phytoplankton not only shape community composition in the historical and future, warmer ocean, but that these traits have significant feedbacks on global biogeochemical cycles.

Convergence in simulating global soil organic carbon by structurally different models after data assimilation.

Current biogeochemical models produce carbon-climate feedback projections with large uncertainties, often attributed to their structural differences when simulating soil organic carbon (SOC) dynamics worldwide. However, choices of model parameter values that quantify the strength and represent properties of different soil carbon cycle processes could also contribute to model simulation uncertainties. Here, we demonstrate the critical role of using common observational data in reducing model uncertainty in estimates of global SOC storage. Two structurally different models featuring distinctive carbon pools, decomposition kinetics, and carbon transfer pathways simulate opposite global SOC distributions with their customary parameter values yet converge to similar results after being informed by the same global SOC database using a data assimilation approach. The converged spatial SOC simulations result from similar simulations in key model components such as carbon transfer efficiency, baseline decomposition rate, and environmental effects on carbon fluxes by these two models after data assimilation. Moreover, data assimilation results suggest equally effective simulations of SOC using models following either first-order or Michaelis-Menten kinetics at the global scale. Nevertheless, a wider range of data with high-quality control and assurance are needed to further constrain SOC dynamics simulations and reduce unconstrained parameters. New sets of data, such as microbial genomics-function relationships, may also suggest novel structures to account for in future model development. Overall, our results highlight the importance of observational data in informing model development and constraining model predictions.

A ReaxFF Potential for Modeling Organic Matter Degradation with Oxybromine Oxidants.

Oxidation of organic matter with oxybromine oxidants is ushering in a new era of enhanced hydrocarbon recovery. While these potent reagents are being tested in laboratory and field experiments, there is a pressing demand to delineate the molecular processes governing oxidation reactions at geological depth. Here, we parameterize a ReaxFF potential to model the oxidative decompositions of aliphatic and aromatic hydrocarbons in the presence of water-NaBr solutions that contain oxybromine (BrOn)- oxidizers. Our parameterization results in a reliable empirical bond-order potential that accurately calculates bond energies, exhibiting an RMSE of ∼1.18 eV, corresponding to 1.36 % average error. Reproducing bond dissociation and binding energies from Density Functional Theory (DFT), our parameterization proves transferable to aqueous environments. This H/C/O/Na/Br ReaxFF potential accurately reproduces the oxidation pathways of small hydrocarbons with oxybromine oxidizers. This force field captures proton and oxygen transfer, C-C bond tautomerization, and cleavage, leading to ring-opening and chain fragmentation. Molecular dynamic simulations demonstrate the oxidative degradation of aromatic and aliphatic kerogen-like moieties in bulk solutions. We envision that such reactive force fields will be useful to understand better the oxidation reactions of organic matter formed in geological reservoirs for enhanced shale gas recovery and improved carbon dioxide treatments.

Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes.

Genome-scale metabolic models provide a valuable resource to study metabolism and cell physiology. These models are employed with approaches from the constraint-based modeling framework to predict metabolic and physiological phenotypes. The prediction performance of genome-scale metabolic models can be improved by including protein constraints. The resulting protein-constrained models consider data on turnover numbers (kcat ) and facilitate the integration of protein abundances. In this systematic review, we present and discuss the current state-of-the-art regarding the estimation of kinetic parameters used in protein-constrained models. We also highlight how data-driven and constraint-based approaches can aid the estimation of turnover numbers and their usage in improving predictions of cellular phenotypes. Finally, we identify standing challenges in protein-constrained metabolic models and provide a perspective regarding future approaches to improve the predictive performance.

Regional differences in the effects of various Stokes drifts on the cooling of the marine environment under different wave conditions.

The WAVEWATCHIII model is employed to simulate Stokes drift, utilizing four distinct schemes integrated into the SBPOM circulation model. Deviations between simulated values and observations from the Optimum Interpolation Sea Surface Temperature (OISST) dataset unveil significant variations, particularly in regions characterized by pronounced swell. The northern hemisphere exhibits the highest deviations, reaching up to 0.3 °C during the March-April-May (MAM) and December-January-February (DJF) periods, while the Antarctic Circumpolar Current (ACC) consistently displays smaller deviations of approximately 0.1 °C. Deviations from Argo buoy measurements hover around 0.1 °C, except in the northern hemisphere where they escalate to approximately 1.5 °C. A comparative analysis of simulation results and Argo buoy measurements reveals an increasing deviation trend with a higher proportion of swell in specific sea areas, particularly evident in simulations utilizing approximate parameterization schemes. Notably, the Phillips profile scheme exhibits optimal performance, while the monochromatic profile scheme peaks with a simulated deviation of 0.13 °C. In contrast, the wave spectrum profile scheme consistently demonstrates applicability across diverse wave conditions and accurately captures the mixed layer at various depths. This study highlights the importance of the coupled WAVEWATCHIII-SBPOM model in accurately modeling future ocean conditions, providing valuable insight into the field of environmental science.

Minimal Mechanisms of Microtubule Length Regulation in Living Cells.

The microtubule cytoskeleton is responsible for sustained, long-range intracellular transport of mRNAs, proteins, and organelles in neurons. Neuronal microtubules must be stable enough to ensure reliable transport, but they also undergo dynamic instability, as their plus and minus ends continuously switch between growth and shrinking. This process allows for continuous rebuilding of the cytoskeleton and for flexibility in injury settings. Motivated by in vivo experimental data on microtubule behavior in Drosophila neurons, we propose a mathematical model of dendritic microtubule dynamics, with a focus on understanding microtubule length, velocity, and state-duration distributions. We find that limitations on microtubule growth phases are needed for realistic dynamics, but the type of limiting mechanism leads to qualitatively different responses to plausible experimental perturbations. We therefore propose and investigate two minimally-complex length-limiting factors: limitation due to resource (tubulin) constraints and limitation due to catastrophe of large-length microtubules. We combine simulations of a detailed stochastic model with steady-state analysis of a mean-field ordinary differential equations model to map out qualitatively distinct parameter regimes. This provides a basis for predicting changes in microtubule dynamics, tubulin allocation, and the turnover rate of tubulin within microtubules in different experimental environments.

Accurate model of liquid-liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties.

Many intrinsically disordered proteins (IDPs) may undergo liquid-liquid phase separation (LLPS) and participate in the formation of membraneless organelles in the cell, thereby contributing to the regulation and compartmentalization of intracellular biochemical reactions. The phase behavior of IDPs is sequence dependent, and its investigation through molecular simulations requires protein models that combine computational efficiency with an accurate description of intramolecular and intermolecular interactions. We developed a general coarse-grained model of IDPs, with residue-level detail, based on an extensive set of experimental data on single-chain properties. Ensemble-averaged experimental observables are predicted from molecular simulations, and a data-driven parameter-learning procedure is used to identify the residue-specific model parameters that minimize the discrepancy between predictions and experiments. The model accurately reproduces the experimentally observed conformational propensities of a set of IDPs. Through two-body as well as large-scale molecular simulations, we show that the optimization of the intramolecular interactions results in improved predictions of protein self-association and LLPS.

Stochastic rectification of fast oscillations on slow manifold closures.

The problems of identifying the slow component (e.g., for weather forecast initialization) and of characterizing slow-fast interactions are central to geophysical fluid dynamics. In this study, the related rectification problem of slow manifold closures is addressed when breakdown of slow-to-fast scales deterministic parameterizations occurs due to explosive emergence of fast oscillations on the slow, geostrophic motion. For such regimes, it is shown on the Lorenz 80 model that if 1) the underlying manifold provides a good approximation of the optimal nonlinear parameterization that averages out the fast variables and 2) the residual dynamics off this manifold is mainly orthogonal to it, then no memory terms are required in the Mori-Zwanzig full closure. Instead, the noise term is key to resolve, and is shown to be, in this case, well modeled by a state-independent noise, obtained by means of networks of stochastic nonlinear oscillators. This stochastic parameterization allows, in turn, for rectifying the momentum-balanced slow manifold, and for accurate recovery of the multiscale dynamics. The approach is promising to be further applied to the closure of other more complex slow-fast systems, in strongly coupled regimes.

Neurochemical organization of cortical proteinopathy and neurophysiology along the Alzheimer's disease continuum.

INTRODUCTION: Despite parallel research indicating amyloid-ß accumulation, alterations in cortical neurophysiological signaling, and multi-system neurotransmitter disruptions in Alzheimer's disease (AD), the relationships between these phenomena remains unclear. METHODS: Using magnetoencephalography, positron emission tomography, and an atlas of 19 neurotransmitters, we studied the alignment between neurophysiological alterations, amyloid-ß deposition, and the neurochemical gradients of the cortex. RESULTS: In patients with mild cognitive impairment and AD, changes in cortical rhythms were topographically aligned with cholinergic, serotonergic, and dopaminergic systems. These alignments correlated with the severity of clinical impairments. Additionally, cortical amyloid-ß plaques were preferentially deposited along neurochemical boundaries, influencing how neurophysiological alterations align with muscarinic acetylcholine receptors. Most of the amyloid-ß-neurochemical and alpha-band neuro-physio-chemical alignments replicated in an independent dataset of individuals with asymptomatic amyloid-ß accumulation. DISCUSSION: Our findings demonstrate that AD pathology aligns topographically with the cortical distribution of chemical neuromodulator systems and scales with clinical severity, with implications for potential pharmacotherapeutic pathways. HIGHLIGHTS: Changes in cortical rhythms in Alzheimer's are organized along neurochemical boundaries. The strength of these alignments is related to clinical symptom severity. Deposition of amyloid-ß (Aß) is aligned with similar neurotransmitter systems. Aß deposition mediates the alignment of beta rhythms with cholinergic systems. Most alignments replicate in participants with pre-clinical Alzheimer's pathology.

From field soil sampling to watershed model: Upscaling by integrating information entropy and interpolation method.

Soil property data plays a crucial role in watershed hydrology and non-point source (H/NPS) modeling, but how to improve modeling accuracy with affordable soil samplings and the effects of sampling information on H/NPS modeling remains to be further explored. In this study, the number of sampling points and soil properties were optimized by the information entropy and the spatial interpolation method. Then the sampled properties were parameterized and the effects of different parameterization schemes on H/NPS modeling were tested using the Soil and Water Assessment Tool (SWAT). The results indicated that the required sampling points increased successively for soil bulk density (SOL_BD), soil saturated hydraulic conductivity (SOL_K) and soil available water capacity (SOL_AWC). Compared to the traditional database (Harmonized world soil database), the NSE and R2 performance by new scheme increased by 22.8% and 10.5%, respectively. The entropy-based optimization reduced the sampling points by 13.2%, indicating a more cost-effective scheme. Compared to hydrological simulation, sampled properties showed greater effects on NPS modeling, especially for nitrogen. This proposed method/framework can be generalized to other watersheds by upscaling field soil sampling information to the watershed scale, thus improving H/NPS simulation.

Calibration using R-programming and parallel processing at the HUC12 subbasin scale in the Mid-Atlantic region: Development of national SWAT hydrologic calibration.

The first phase of a national scale Soil and Water Assessment Tool (SWAT) model calibration effort at the HUC12 (Hydrologic Unit Code 12) watershed scale was demonstrated over the Mid-Atlantic Region (R02), consisting of 3036 HUC12 subbasins. An R-programming based tool was developed for streamflow calibration including parallel processing for SWAT-CUP (SWAT- Calibration and Uncertainty Programs) to streamline the computational burden of calibration. Successful calibration of streamflow for 415 gages (KGE ≥0.5, Kling-Gupta efficiency; PBIAS ≤15%, Percent Bias) out of 553 selected monitoring gages was achieved in this study, yielding calibration parameter values for 2106 HUC12 subbasins. Additionally, 67 more gages were calibrated with relaxed PBIAS criteria of 25%, yielding calibration parameter values for an additional 150 HUC12 subbasins. This first phase of calibration across R02 increases the reliability, uniformity, and replicability of SWAT-related hydrological studies. Moreover, the study presents a comprehensive approach for efficiently optimizing large-scale multi-site calibration.

Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study.

To learn multiscale functional connectivity patterns of the aging brain, we built a brain age prediction model of functional connectivity measures at seven scales on a large fMRI dataset, consisting of resting-state fMRI scans of 4186 individuals with a wide age range (22 to 97 years, with an average of 63) from five cohorts. We computed multiscale functional connectivity measures of individual subjects using a personalized functional network computational method, harmonized the functional connectivity measures of subjects from multiple datasets in order to build a functional brain age model, and finally evaluated how functional brain age gap correlated with cognitive measures of individual subjects. Our study has revealed that functional connectivity measures at multiple scales were more informative than those at any single scale for the brain age prediction, the data harmonization significantly improved the brain age prediction performance, and the data harmonization in the functional connectivity measures' tangent space worked better than in their original space. Moreover, brain age gap scores of individual subjects derived from the brain age prediction model were significantly correlated with clinical and cognitive measures. Overall, these results demonstrated that multiscale functional connectivity patterns learned from a large-scale multi-site rsfMRI dataset were informative for characterizing the aging brain and the derived brain age gap was associated with cognitive and clinical measures.

Maximum entropy models reveal spatial variation of metabolic scaling in stream fish communities.

Metabolic scaling provides valuable information about the physiological and ecological functions of organisms, although few studies have quantified the metabolic scaling exponent (b) of communities under natural conditions. Maximum entropy theory of ecology (METE) is a constraint-based unified theory with the potential to empirically assess the spatial variation of the metabolic scaling. Our main goal is to develop a novel method of estimating b within a community by integrating metabolic scaling and METE. We also aim to study the relationships between the estimated b and environmental variables across communities. We developed a new METE framework to estimate b in 118 stream fish communities in the north-eastern Iberian Peninsula. We first extended the original maximum entropy model by parameterizing b in the model prediction of the community-level individual size distributions and compared our results with empirical and theoretical predictions. We then tested the effects of abiotic conditions, species composition and human disturbance on the spatial variation of community-level b. We found that community-level b of the best maximum entropy models showed great spatial variability, ranging from 0.25 to 2.38. The mean exponent (b = 0.93) resembled the community-aggregated mean values from three previous metabolic scaling meta-analyses, all of which were greater than the theoretical predictions of 0.67 and 0.75. Furthermore, the generalized additive model showed that b reached maximum at the intermediate mean annual precipitation level and declined significantly as human disturbance intensified. The parameterized METE is proposed here as a novel framework for estimating the metabolic pace of life of stream fish communities. The large spatial variation of b may reflect the combined effects of environmental constraints and species interactions, which likely have important feedback on the structure and function of natural communities. Our newly developed framework can also be applied to study the impact of global environmental pressures on metabolic scaling and energy use in other ecosystems.

Implications of SARS-CoV-2 spike protein interactions with Zn-bound form of ACE2: a computational structural study.

The COVID-19 pandemic has generated a major interest in designing inhibitors to prevent SARS-CoV-2 binding on host cells to protect against infection. One promising approach to such research utilizes molecular dynamics simulation to identify potential inhibitors that can prevent the interaction between spike (S) protein on the virus and angiotensin converting enzyme 2 (ACE2) receptor on the host cells. In these studies, many groups have chosen to exclude the ACE2-bound zinc (Zn) ion, which is critical for its enzymatic activity. While the relatively distant location of Zn ion from the S protein binding site (S1 domain), combined with the difficulties in modeling this ion has motivated the decision of exclusion, Zn can potentially contribute to the structural stability of the entire protein, and thus, may have implications on S protein-ACE2 interaction. In this study, the authors model both the ACE2-S1 and ACE2-inhibitor (mAb) system to investigate if there are variations in structure and the readouts due to the presence of Zn ion. Although distant from the S1 or inhibitor binding region, inclusion/exclusion of Zn has statistically significant effects on the structural stability and binding free energy in these systems. In particular, the binding free energy of the ACE2-S1 and ACE2-inhibitor structures is - 3.26 and - 14.8 kcal/mol stronger, respectively, in the Zn-bound structure than in the Zn-free structures. This finding suggests that including Zn may be important in screening potentially inhibitors and may be particularly important in modeling monoclonal antibodies, which may be more sensitive to changes in antigen structure.

Connecting Agent-Based Models with High-Dimensional Parameter Spaces to Multidimensional Data Using SMoRe ParS: A Surrogate Modeling Approach.

Across a broad range of disciplines, agent-based models (ABMs) are increasingly utilized for replicating, predicting, and understanding complex systems and their emergent behavior. In the biological and biomedical sciences, researchers employ ABMs to elucidate complex cellular and molecular interactions across multiple scales under varying conditions. Data generated at these multiple scales, however, presents a computational challenge for robust analysis with ABMs. Indeed, calibrating ABMs remains an open topic of research due to their own high-dimensional parameter spaces. In response to these challenges, we extend and validate our novel methodology, Surrogate Modeling for Reconstructing Parameter Surfaces (SMoRe ParS), arriving at a computationally efficient framework for connecting high dimensional ABM parameter spaces with multidimensional data. Specifically, we modify SMoRe ParS to initially confine high dimensional ABM parameter spaces using unidimensional data, namely, single time-course information of in vitro cancer cell growth assays. Subsequently, we broaden the scope of our approach to encompass more complex ABMs and constrain parameter spaces using multidimensional data. We explore this extension with in vitro cancer cell inhibition assays involving the chemotherapeutic agent oxaliplatin. For each scenario, we validate and evaluate the effectiveness of our approach by comparing how well ABM simulations match the experimental data when using SMoRe ParS-inferred parameters versus parameters inferred by a commonly used direct method. In so doing, we show that our approach of using an explicitly formulated surrogate model as an interlocutor between the ABM and the experimental data effectively calibrates the ABM parameter space to multidimensional data. Our method thus provides a robust and scalable strategy for leveraging multidimensional data to inform multiscale ABMs and explore the uncertainty in their parameters.

A Fast and Robust Lane Detection via Online Re-Parameterization and Hybrid Attention.

Lane detection is a vital component of intelligent driving systems, offering indispensable functionality to keep the vehicle within its designated lane, thereby reducing the risk of lane departure. However, the complexity of the traffic environment, coupled with the rapid movement of vehicles, creates many challenges for detection tasks. Current lane detection methods suffer from issues such as low feature extraction capability, poor real-time detection, and inadequate robustness. Addressing these issues, this paper proposes a lane detection algorithm that combines an online re-parameterization ResNet with a hybrid attention mechanism. Firstly, we replaced standard convolution with online re-parameterization convolution, simplifying the convolutional operations during the inference phase and subsequently reducing the detection time. In an effort to enhance the performance of the model, a hybrid attention module is incorporated to enhance the ability to focus on elongated targets. Finally, a row anchor lane detection method is introduced to analyze the existence and location of lane lines row by row in the image and output the predicted lane positions. The experimental outcomes illustrate that the model achieves F1 scores of 96.84% and 75.60% on the publicly available TuSimple and CULane lane datasets, respectively. Moreover, the inference speed reaches a notable 304 frames per second (FPS). The overall performance outperforms other detection models and fulfills the requirements of real-time responsiveness and robustness for lane detection tasks.

RepECN: Making ConvNets Better Again for Efficient Image Super-Resolution.

Traditional Convolutional Neural Network (ConvNet, CNN)-based image super-resolution (SR) methods have lower computation costs, making them more friendly for real-world scenarios. However, they suffer from lower performance. On the contrary, Vision Transformer (ViT)-based SR methods have achieved impressive performance recently, but these methods often suffer from high computation costs and model storage overhead, making them hard to meet the requirements in practical application scenarios. In practical scenarios, an SR model should reconstruct an image with high quality and fast inference. To handle this issue, we propose a novel CNN-based Efficient Residual ConvNet enhanced with structural Re-parameterization (RepECN) for a better trade-off between performance and efficiency. A stage-to-block hierarchical architecture design paradigm inspired by ViT is utilized to keep the state-of-the-art performance, while the efficiency is ensured by abandoning the time-consuming Multi-Head Self-Attention (MHSA) and by re-designing the block-level modules based on CNN. Specifically, RepECN consists of three structural modules: a shallow feature extraction module, a deep feature extraction, and an image reconstruction module. The deep feature extraction module comprises multiple ConvNet Stages (CNS), each containing 6 Re-Parameterization ConvNet Blocks (RepCNB), a head layer, and a residual connection. The RepCNB utilizes larger kernel convolutions rather than MHSA to enhance the capability of learning long-range dependence. In the image reconstruction module, an upsampling module consisting of nearest-neighbor interpolation and pixel attention is deployed to reduce parameters and maintain reconstruction performance, while bicubic interpolation on another branch allows the backbone network to focus on learning high-frequency information. The extensive experimental results on multiple public benchmarks show that our RepECN can achieve 2.5∼5× faster inference than the state-of-the-art ViT-based SR model with better or competitive super-resolving performance, indicating that our RepECN can reconstruct high-quality images with fast inference.