Phylogeographic analysis of the Bantu language expansion supports a rainforest route.

The Bantu expansion transformed the linguistic, economic, and cultural composition of sub-Saharan Africa. However, the exact dates and routes taken by the ancestors of the speakers of the more than 500 current Bantu languages remain uncertain. Here, we use the recently developed "break-away" geographical diffusion model, specially designed for modeling migrations, with "augmented" geographic information, to reconstruct the Bantu language family expansion. This Bayesian phylogeographic approach with augmented geographical data provides a powerful way of linking linguistic, archaeological, and genetic data to test hypotheses about large language family expansions. We compare four hypotheses: an early major split north of the rainforest; a migration through the Sangha River Interval corridor around 2,500 BP; a coastal migration around 4,000 BP; and a migration through the rainforest before the corridor opening, at 4,000 BP. Our results produce a topology and timeline for the Bantu language family, which supports the hypothesis of an expansion through Central African tropical forests at 4,420 BP (4,040 to 5,000 95% highest posterior density interval), well before the Sangha River Interval was open.

Recurrent droughts increase risk of cascading tipping events by outpacing adaptive capacities in the Amazon rainforest.

Tipping elements are nonlinear subsystems of the Earth system that have the potential to abruptly shift to another state if environmental change occurs close to a critical threshold with large consequences for human societies and ecosystems. Among these tipping elements may be the Amazon rainforest, which has been undergoing intensive anthropogenic activities and increasingly frequent droughts. Here, we assess how extreme deviations from climatological rainfall regimes may cause local forest collapse that cascades through the coupled forest-climate system. We develop a conceptual dynamic network model to isolate and uncover the role of atmospheric moisture recycling in such tipping cascades. We account for heterogeneity in critical thresholds of the forest caused by adaptation to local climatic conditions. Our results reveal that, despite this adaptation, a future climate characterized by permanent drought conditions could trigger a transition to an open canopy state particularly in the southern Amazon. The loss of atmospheric moisture recycling contributes to one-third of the tipping events. Thus, by exceeding local thresholds in forest adaptive capacity, local climate change impacts may propagate to other regions of the Amazon basin, causing a risk of forest shifts even in regions where critical thresholds have not been crossed locally.

Different profiles of soil phosphorous compounds depending on tree species and availability of soil phosphorus in a tropical rainforest in French Guiana.

BACKGROUND: The availability of soil phosphorus (P) often limits the productivities of wet tropical lowland forests. Little is known, however, about the metabolomic profile of different chemical P compounds with potentially different uses and about the cycling of P and their variability across space under different tree species in highly diverse tropical rainforests. RESULTS: We hypothesised that the different strategies of the competing tree species to retranslocate, mineralise, mobilise, and take up P from the soil would promote distinct soil 31P profiles. We tested this hypothesis by performing a metabolomic analysis of the soils in two rainforests in French Guiana using 31P nuclear magnetic resonance (NMR). We analysed 31P NMR chemical shifts in soil solutions of model P compounds, including inorganic phosphates, orthophosphate mono- and diesters, phosphonates, and organic polyphosphates. The identity of the tree species (growing above the soil samples) explained > 53% of the total variance of the 31P NMR metabolomic profiles of the soils, suggesting species-specific ecological niches and/or species-specific interactions with the soil microbiome and soil trophic web structure and functionality determining the use and production of P compounds. Differences at regional and topographic levels also explained some part of the the total variance of the 31P NMR profiles, although less than the influence of the tree species. Multivariate analyses of soil 31P NMR metabolomics data indicated higher soil concentrations of P biomolecules involved in the active use of P (nucleic acids and molecules involved with energy and anabolism) in soils with lower concentrations of total soil P and higher concentrations of P-storing biomolecules in soils with higher concentrations of total P. CONCLUSIONS: The results strongly suggest "niches" of soil P profiles associated with physical gradients, mostly topographic position, and with the specific distribution of species along this gradient, which is associated with species-specific strategies of soil P mineralisation, mobilisation, use, and uptake.

Spathaspora marinasilvae sp. nov., a xylose-fermenting yeast isolated from galleries of passalid beetles and rotting wood in the Amazonian rainforest biome.

Four yeast isolates were obtained from rotting wood and galleries of passalid beetles collected in different sites of the Brazilian Amazonian Rainforest in Brazil. This yeast produces unconjugated allantoid asci each with a single elongated ascospore with curved ends. Sequence analysis of the internal transcribed spacer-5.8 S region and the D1/D2 domains of the large subunit ribosomal RNA (rRNA) gene showed that the isolates represent a novel species of the genus Spathaspora. The novel species is phylogenetically related to a subclade containing Spathaspora arborariae and Spathaspora suhii. Phylogenomic analysis based on 1884 single-copy orthologs for a set of Spathaspora species whose whole genome sequences are available confirmed that the novel species represented by strain UFMG-CM-Y285 is phylogenetically close to Sp. arborariae. The name Spathaspora marinasilvae sp. nov. is proposed to accommodate the novel species. The holotype of Sp. marinasilvae is CBS 13467 T (MycoBank 852799). The novel species was able to accumulate xylitol and produce ethanol from d-xylose, a trait of biotechnological interest common to several species of the genus Spathaspora.

Host preference explains the high endemism of ectomycorrhizal fungi in a dipterocarp rainforest.

Ectomycorrhizal (ECM) fungi are important tree symbionts within forests. The biogeography of ECM fungi remains to be investigated because it is challenging to observe and identify species. Because most ECM plant taxa have a Holarctic distribution, it is difficult to evaluate the extent to which host preference restricts the global distribution of ECM fungi. To address this issue, we aimed to assess whether host preference enhances the endemism of ECM fungi that inhabit dipterocarp rainforests. Highly similar sequences of 175 operational taxonomic units (OTUs) for ECM fungi that were obtained from Lambir Hill's National Park, Sarawak, Malaysia, were searched for in a nucleotide sequence database. Using a two-step binomial model, the probability of presence for the query OTUs and the registration rate of barcode sequences in each country were simultaneously estimated. The results revealed that the probability of presence in the respective countries increased with increasing species richness of Dipterocarpaceae and decreasing geographical distance from the study site (i.e. Lambir). Furthermore, most of the ECM fungi were shown to be endemic to Malaysia and neighbouring countries. These findings suggest that not only dispersal limitation but also host preference are responsible for the high endemism of ECM fungi in dipterocarp rainforests. Moreover, host preference likely determines the areas where ECM fungi potentially expand and dispersal limitation creates distance-decay patterns within suitable habitats. Although host preference has received less attention than dispersal limitation, our findings support that host preference has a profound influence on the global distribution of ECM fungi.

Phylogenomic insights into the historical biogeography, character-state evolution, and species diversification rates of Cypripedioideae (Orchidaceae).

Cypripedioideae (slipper orchids; Orchidaceae) currently consist of âˆ¼200 herbaceous species with a strikingly disjunctive distribution in tropical and temperate regions of both hemispheres. In this study, an updated phylogeny with representatives from all five cypripedioid genera was presented based on maximum likelihood and Bayesian inference of plastome and low-copy nuclear genes. Phylogenomic analyses indicated that each genus is monophyletic, but some relationships (e.g., those among Cypripedium sects. Acaulia, Arietinum, Bifolia, Flabellinervia, Obtusipetala and Palangshanensia) conflict with those in previous studies based on Sanger data. Cypripedioideae appeared to have arisen in South America and/or the adjacent Qinghai-Tibet Plateau and Hengduan Mountains âˆ¼35 Mya. We inferred multiple dispersal events between East Asia and North America in Cypripedium, and between mainland Southeast Asia and the Malay Archipelago in Paphiopedilum. In the Americas, divergences among four genera (except Cypripedium) occurred around 31-20 Mya, long before the closure of the Isthmus of Panama, indicating the importance of long-distance dispersal. Evolutionary patterns between morphological and plastome character evolution suggested several traits, genome size and NDH genes, which are likely to have contributed to the success of slipper orchids in alpine floras and low-elevation forests. Species diversification rates were notably higher in epiphytic clades of Paphiopedilum than in other, terrestrial cypripedioids, paralleling similar accelerations associated with epiphytism in other groups. This study also suggested that sea-level fluctuations and mountain-building processes promoted the diversification of the largest genera, Paphiopedilum and Cypripedium.

New tree height allometries derived from terrestrial laser scanning reveal substantial discrepancies with forest inventory methods in tropical rainforests.

Tree allometric models, essential for monitoring and predicting terrestrial carbon stocks, are traditionally built on global databases with forest inventory measurements of stem diameter (D) and tree height (H). However, these databases often combine H measurements obtained through various measurement methods, each with distinct error patterns, affecting the resulting H:D allometries. In recent decades, terrestrial laser scanning (TLS) has emerged as a widely accepted method for accurate, non-destructive tree structural measurements. This study used TLS data to evaluate the prediction accuracy of forest inventory-based H:D allometries and to develop more accurate pantropical allometries. We considered 19 tropical rainforest plots across four continents. Eleven plots had forest inventory and RIEGL VZ-400(i) TLS-based D and H data, allowing accuracy assessment of local forest inventory-based H:D allometries. Additionally, TLS-based data from 1951 trees from all 19 plots were used to create new pantropical H:D allometries for tropical rainforests. Our findings reveal that in most plots, forest inventory-based H:D allometries underestimated H compared with TLS-based allometries. For 30-metre-tall trees, these underestimations varied from -1.6 m (-5.3%) to -7.5 m (-25.4%). In the Malaysian plot with trees reaching up to 77 m in height, the underestimation was as much as -31.7 m (-41.3%). We propose a TLS-based pantropical H:D allometry, incorporating maximum climatological water deficit for site effects, with a mean uncertainty of 19.1% and a mean bias of -4.8%. While the mean uncertainty is roughly 2.3% greater than that of the Chave2014 model, this model demonstrates more consistent uncertainties across tree size and delivers less biased estimates of H (with a reduction of 8.23%). In summary, recognizing the errors in H measurements from forest inventory methods is vital, as they can propagate into the allometries they inform. This study underscores the potential of TLS for accurate H and D measurements in tropical rainforests, essential for refining tree allometries.

Linking changes in landscape structure to insect herbivory in forest edges and interiors of Atlantic Forest remnants.

Human activities have triggered profound changes in natural landscapes, resulting in species loss and disruption of pivotal ecological interactions such as insect herbivory. This antagonistic interaction is affected by complex pathways (e.g., abundance of herbivores and predators, plant chemical defenses, and resource availability), but the knowledge regarding how forest loss and fragmentation affect insect herbivory in human-modified tropical landscapes still remains poorly understood. In this context, we assessed multi-pathways by which changes in landscape structure likely influence insect herbivory in 20 Atlantic forest fragments in Brazil. Using path analysis, we estimated the direct effects of forest cover and forest edge density, and the indirect effect via canopy openness, number of understory plants and phenolic compounds, on leaf damage in understory plants located in the edge and interior of forest fragments. In particular, plants located in forest edges experienced greater leaf damage than interior ones. We observed that landscape edge density exerted a positive and direct effect on leaf damage in plants sampled at the edge of forest fragments. Our findings also indicated that forest loss and increase of edge density led to an increase in the canopy opening in the forest interior, which causes a reduction in the number of understory plants and, consequently, an increase in leaf damage. In addition, we detected that phenolic compounds negatively influence leaf damage in forest interior plants. Given the increasing forest loss in tropical regions, in which forest fragments become stranded in highly deforested, edge-dominated and degraded landscapes, our study highlights the pervasive enhancement in insect herbivory in remaining forest fragments-especially along forest edges and canopy gaps in the forest interior. As a result, increased herbivory is likely to affect forest regeneration and accelerate the ecological meltdown processes in these highly deforested and disturbed anthropogenic landscapes.

The puzzling ecology of African Marantaceae forests.

Marantaceae forests are tropical rainforests characterized by a continuous understory layer of perennial giant herbs and a near absence of tree regeneration. Although widespread in West-Central Africa, Marantaceae forests have rarely been considered in the international literature. Yet, they pose key challenges and opportunities for theoretical ecology that transcend the borders of the continent. Specifically, we ask in this review whether open Marantaceae forests and dense closed-canopy forests can be considered as one of the few documented examples of alternative stable states in tropical forests. First, we introduce the different ecological factors that have been posited to drive Marantaceae forests (climate, soil, historical and recent anthropogenic pressures, herbivores) and develop the different hypotheses that have been suggested to explain how Marantaceae forests establish in relation with other vegetation types (understory invasion, early succession after disturbance, and intermediate successional stage). Then, we review the underlying ecological mechanisms that can explain the stability of Marantaceae forests in the long term (tree recruitment inhibition, promotion of and resilience to fire, adaptive reproduction, maintenance by megaherbivores). Although some uncertainties remain and call for further empirical and theoretical research, we found converging evidence that Marantaceae forests are associated with an ecological succession that has been deflected or arrested. If verified, Marantaceae forests may provide a useful model to understand critical transitions in forest ecosystems, which is of particular relevance to achieve sustainable forest management and mitigate global climate change.

Loss of species and functions in a deforested megadiverse tropical forest.

Tropical species richness is threatened by habitat degradation associated with land-use conversion, yet the consequences for functional diversity remain little understood. Progress has been hindered by difficulties in obtaining comprehensive species-level trait information to characterize entire assemblages and insufficient appreciation that increasing land-cover heterogeneity potentially compensates for species loss. We examined the impacts of tropical deforestation associated with land-use heterogeneity on bird species richness, functional redundancy, functional diversity, and associated components (i.e., alpha diversity, species dissimilarity, and interaction strength of the relationship between abundance and functional dissimilarity). We analyzed over 200 georeferenced bird assemblages in the Atlantic Forest of Brazil. We characterized the functional role of the species of each assemblage and modeled biodiversity metrics as a function of forest cover and land-cover heterogeneity. Replacement of native Atlantic Forest with a mosaic of land uses (e.g., agriculture, pastures, and urbanization) reduced bird species richness in a nonrandom way. Core forest species, or species considered sensitive to edges, tended to be absent in communities in heterogenous environments. Overall, functional diversity and functional redundancy of bird species were not affected by forest loss. However, birds in highly heterogenous habitats were functionally distinct from birds in forest, suggesting a shift in community composition toward mosaic-exclusive species led by land-cover heterogeneity. Threatened species of the Atlantic Forest did not seem to tolerate degraded and heterogeneous environments; they remained primarily in areas with large forest tracts. Our results shed light on the complex effects of native forest transformation to mosaics of anthropogenic landscapes and emphasize the importance of considering the effects of deforestation and land-use heterogeneity when assessing deforestation effects on Neotropical biodiversity.

Pérdida de especies y funciones en un bosque tropical megadiverso deforestado Resumen La riqueza de especies tropicales está amenazada por la degradación asociada con la conversión del uso de suelo, y aun así entendemos muy poco de las consecuencias que esto tiene para la diversidad funcional. El progreso está obstaculizado por las dificultades para obtener información completa de los rasgos a nivel de especie para caracterizar ensamblajes completos y la apreciación insuficiente de que la heterogeneidad creciente de la cobertura del suelo tiene el potencial para compensar la pérdida de especies. Analizamos el impacto que tiene la deforestación tropical asociada con la heterogeneidad del uso de suelo sobre la riqueza de especies de aves, la redundancia funcional, la diversidad funcional y sus componentes asociados (es decir, diversidad alfa, disimilitud de especies y fuerza de interacción de la relación entre la abundancia y la disimilitud funcional). Analizamos más de 200 ensamblajes georreferenciados de aves en el Bosque Atlántico de Brasil. Caracterizamos el papel funcional de las especies de cada ensamblaje y modelamos las medidas de biodiversidad como función de la cobertura forestal y de la heterogeneidad del uso de suelo. La sustitución del Bosque Atlántico nativo con un mosaico de usos de suelo (p. ej.: agricultura, pastura y urbanización) redujo la riqueza de especies de una manera no aleatoria. Las especies nucleares del bosque, o las especies consideradas como sensibles a los bordes, tendieron a estar ausentes en las comunidades de los ambientes heterogéneas. En general, la diversidad y la redundancia funcionales de las especies de aves no se vieron afectadas por la pérdida del bosque. Sin embargo, las aves en los hábitats con alta heterogeneidad eran funcionalmente distintas a las aves de los bosques, lo que sugiere un cambio en la composición x de la comunidad hacia especies exclusivas de mosaicos llevadas por la heterogeneidad de la cobertura del suelo. Las especies amenazadas del Bosque Atlántico no parecieron tolerar el ambiente degradado y heterogéneo pues permanecieron principalmente en las áreas con grandes extensiones de bosque. Nuestros resultados arrojan luz sobre los efectos complejos de la transformación de los bosques nativos en mosaicos de paisajes antropogénicos y recalcan la importancia de considerar los efectos de la deforestación y la heterogeneidad del uso de suelo cuando se evalúan los efectos de la deforestación sobre la biodiversidad neotropical.

Fate and Transport of Mercury through Waterflows in a Tropical Rainforest.

Knowledge gaps of mercury (Hg) biogeochemical processes in the tropical rainforest limit our understanding of the global Hg mass budget. In this study, we applied Hg stable isotope tracing techniques to quantitatively understand the Hg fate and transport during the waterflows in a tropical rainforest including open-field precipitation, throughfall, and runoff. Hg concentrations in throughfall are 1.5-2 times of the levels in open-field rainfall. However, Hg deposition contributed by throughfall and open-field rainfall is comparable due to the water interception by vegetative biomasses. Runoff from the forest shows nearly one order of magnitude lower Hg concentration than those in throughfall. In contrast to the positive Δ199Hg and Δ200Hg signatures in open-field rainfall, throughfall water exhibits nearly zero signals of Δ199Hg and Δ200Hg, while runoff shows negative Δ199Hg and Δ200Hg signals. Using a binary mixing model, Hg in throughfall and runoff is primarily derived from atmospheric Hg0 inputs, with average contributions of 65 ± 18 and 91 ± 6%, respectively. The combination of flux and isotopic modeling suggests that two-thirds of atmospheric Hg2+ input is intercepted by vegetative biomass, with the remaining atmospheric Hg2+ input captured by the forest floor. Overall, these findings shed light on simulation of Hg cycle in tropical forests.

Deforestation as an Anthropogenic Driver of Mercury Pollution.

Deforestation reduces the capacity of the terrestrial biosphere to take up toxic pollutant mercury (Hg) and enhances the release of secondary Hg from soils. The consequences of deforestation for Hg cycling are not currently considered by anthropogenic emission inventories or specifically addressed under the global Minamata Convention on Mercury. Using global Hg modeling constrained by field observations, we estimate that net Hg fluxes to the atmosphere due to deforestation are 217 Mg year-1 (95% confidence interval (CI): 134-1650 Mg year-1) for 2015, approximately 10% of global primary anthropogenic emissions. If deforestation of the Amazon rainforest continues at business-as-usual rates, net Hg emissions from the region will increase by 153 Mg year-1 by 2050 (CI: 97-418 Mg year-1), enhancing the transport and subsequent deposition of Hg to aquatic ecosystems. Substantial Hg emissions reductions are found for two potential cases of land use policies: conservation of the Amazon rainforest (92 Mg year-1, 95% CI: 59-234 Mg year-1) and global reforestation (98 Mg year-1, 95% CI: 64-449 Mg year-1). We conclude that deforestation-related emissions should be incorporated as an anthropogenic source in Hg inventories and that land use policy could be leveraged to address global Hg pollution.

Development and characterization of nuclear microsatellite markers for the African walnut Coula edulis Baill (Coulaceae).

PREMISE OF THE STUDY: Coula edulis Baill (Coulaceae) is a common tree species in the Guineo-Congolian forests producing an edible fruit known as African walnut, which is an important food and income resource for rural populations. However, the species suffers from a deficit of natural regeneration. We developed here nuclear microsatellite markers for C. edulis to be able to study the genetic structure of its natural populations and gene flow. METHODS AND RESULTS: A genomic library was obtained using the Illumina platform, and 21 polymorphic microsatellite loci were developed. The polymorphic microsatellites displayed eight to 22 alleles per locus (average: 14.2), with a mean expected heterozygosity ranging from 0.33 to 0.72 in five populations from Central and West Africa. CONCLUSIONS: The high polymorphism of the nuclear microsatellite markers developed makes them useful to investigate gene flow and the organization of genetic diversity in C. edulis, and to assess whether particular genetic resources require conservation efforts.

Spatio-temporal trends of mercury levels in alluvial gold mining spoils areas monitored between rainy and dry seasons in the Peruvian Amazon.

Artisanal and small-scale gold mining (ASGM) in the Amazon has degraded tropical forests and escalated mercury (Hg) pollution, affecting biodiversity, ecological processes and rural livelihoods. In the Peruvian Amazon, ASGM annually releases some 181 tons of Hg into the environment. Despite some recent advances in understanding the spatial distribution of Hg within gold mine spoils and the surrounding landscape, temporal dynamics in Hg movement are not well understood. We aimed to reveal spatio-temporal trends of soil Hg in areas degraded by ASGM.,. We analyzed soil and sediment samples during the dry and rainy seasons across 14 ha of potentially contaminated sites and natural forests, in the vicinities of the Native community of San Jacinto in Madre de Dios, Peru. Soil Hg levels of areas impacted by ASGM (0.02 ± 0.02 mg kg-1) were generally below soil environmental quality standards (6.60 mg kg-1). However, they showed high variability, mainly explained by the type of natural cover vegetation, soil organic matter (SOM), clay and sand particles. Temporal trends in Hg levels in soils between seasons differed between landscape units distinguished in the mine spoils. During the rainy season, Hg levels decreased up to 45.5% in uncovered soils, while in artificial pond sediments Hg increased by up to 961%. During the dry season, uncovered degraded soils were more prone to lose Hg than sites covered by vegetation, mainly due to higher soil temperatures and concomitantly increasing volatilization. Soils from natural forests and degraded soil covered by regenerating vegetation showed a high capacity to retain Hg mainly due to the higher plant biomass, higher SOM, and increasing concentrations of clay particles. Disturbingly, our findings suggest high Hg mobility from gold mine spoil to close by sedimentary materials, mainly in artificial ponds through alluvial deposition and pluvial lixiviation. Thus, further research is needed on monitoring, and remediation of sediments in artificial to design sustainable land use strategies.

Taphonomy of harpy eagle predation on primates and other mammals.

The goal of this study is to provide a taphonomic analysis of bone fragments found in harpy eagle nests in the Brazilian Amazonia, utilizing the largest sample of prey remains collected to date. Harpy eagle kill samples were collected from nine nests, between June 2016 and December 2020 in Mato Grosso, Brazil. We identified the specimens, calculated the number of identified specimens (NISP) and minimum number of individuals (MNI). These metrics were used to estimate bone survivability and fragmentation. A total of 1661 specimens (NISP) were collected, representing a minimum number of 234 individuals (MNI). We identified at least nine species of primates, which represent 63.8% of the individuals in the kill sample. Harpy eagles preyed mostly on the medium-sized capuchin and bearded saki monkeys (28.2% of the MNI), and two-toed sloths (17.7% of the MNI). The large woolly monkeys also represented a significant portion of the sample (11.5% of the MNI). Three distinct patterns of bone survivability were found, one characterizing two-toed sloths, another characterizing medium-sized monkeys, and a third typical of woolly monkeys. We conclude that harpy eagle predation leaves an identifiable signature on the prey with a bone survivability pattern specific to each taxon. The intertaxon variations observed in the taphonomic signatures of harpy eagle kills should be taken into account when evaluating the potential influence of these raptors as accumulators of bone material in both paleontological and neontological assemblages.

Predicting the pulse of the Amazon: Machine learning insights into deforestation dynamics.

This study aims to analyze deforestation in the Brazilian Amazon from 1999 to 2020 using machine learning techniques to assess 16 critical factors. Our approach leverages the capabilities of machine learning, particularly Random Forest, which proved to be the most accurate model in terms of determination coefficient, mean squared error, and mean absolute error. The analysis revealed that the harvested area of permanent crops is the most influential variable in predicting deforestation, followed by the area of temporary crops. Furthermore, our findings indicate a significant inverse relationship between public spending and deforestation rates. These results contribute to understanding deforestation dynamics and offer potential strategies for improving conservation efforts.

Açai seed biochar improves soil quality and black pepper seedling development in the Amazon region.

Sustainable management of the Amazon rainforest is fundamental for supporting life on earth because of its crucial role in sequestering carbon. One of the species grown in the forest is açaí (Euterpe oleracea), which is an important food and income source for its inhabitant. The acai seed, resulting from the processing of the fruit, is a solid organic residue, which has been an agent of undesirable environmental impacts such as natural landscape modifications, clogging sewers and water courses, eutrophication of surface waters. In this research, we evaluated the use of wood chips as a source of energy in a rustic oven to produce acai biochar so that family farmers carry out sustainable management of the residue and use biochar to improve soil quality and produce seedlings of native plants to regenerate degraded forests. The experiment was conducted in Pará, Brazil, Amazon region, using a randomized complete block design. A factorial treatment structure was implemented consisting of four biochar particle sizes (3, 5, 7, and 12 mm), 4 application rates (4, 8, 16, and 32 t ha-1), and a biochar-free control, with 5 replications. The results showed that the methodology for biochar production was easy to apply and low cost, allowing its use by family farmers. The combination of biochar rate and particle size affected soil properties and the development of black pepper seedlings in different ways. The soil properties affected were water retention capacity, moisture, fluorescein diacetate hydrolysis and arylsulphatase activity. The growth parameters of the affected black pepper seedlings were height and root system development.

Integrating new variables into a framework to support cacao denomination of origin: a case study in Southwest Colombia.

BACKGROUND: Cocoa quality plays a pivotal role in establishing denominations of origin, with genotypes, geography, climate and soil conditions being key variables. However, these factors have not been comprehensively explored in defining cacao denominations of origin. The present study addresses this gap by laying the foundation for cacao denomination of origin, focusing on the Buenaventura region on Colombia's Pacific coast. Our goal is to provide a holistic understanding of the elements underpinning cacao denomination of origin, emphasizing Buenaventura's unique cocoa quality and geographical significance. RESULTS: Through the Buenaventura case, we propose a robust framework applicable to other cacao-producing regions, elevating the recognition and value of cacao denomination of origin. Our framework encompasses geography, agronomy, genetics, microbial diversity, pests and diseases and cocoa quality. In a pioneering move, we propose a cacao denomination of origin in Colombia, specifically examining Bajo Calima, Sabaletas and Cisneros within Buenaventura region. Buenaventura stands out for its cocoa quality, characterized by fruity flavors attributed to the rich biodiversity of the lowland rainforest. CONCLUSION: Our analysis indicates specific geographical indicators for each of the study zones, with Buenaventura identified as a region with natural characteristics to produce fine flavour cocoa products. Each zone exhibited a high differentiation and diversity of cacao cultivars. Buenaventura has the potential to be designated as a future denomination of origin for cacao from the Pacific region of Colombia, characterized by its unique fruity-aroma chocolates. Our framework is adaptable to other cacao-producing regions, facilitating the establishment of denominations of origin within the cocoa industry and agriculture. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Evaluation of soil pollution effects on maize (Zea mays) at selected Pb-Zn and limestone mine sites in Ebonyi State, Southeastern Nigeria.

This research examined soil contamination and the uptake of potentially toxic elements (PTEs) by maize plants in mining communities. We collected 192 soil samples and 40 maize plant samples from two mining areas and a pristine site. We analyzed the physical properties and element content of the soil, including phosphorus, nitrogen, potassium, Fe, Zn, Co, Pb, Cd, Cr, and Ni. We also measured the elemental concentrations in the maize plants. The study found higher levels of Zn, Cu, and Pb at the mining sites compared to the control areas. The pollution factor (CF) indicated pollution with Cu > Pb > and > Zn at both mine sites. The pollution index (PLI) showed no pollution in the Nkalagu mine and control sites, but heavy and moderate pollution at the Ameka mine and control sites, respectively. The Ameka mine site was enriched with Zn. The bioaccumulation coefficient (BAC) was < 1 except for Zn at the Nkalagu mine and control site. The transfer factor for Fe and Zn from root to shoot was > 1. Pb was > 1 in all study areas except the Ameka mining areas. The results suggest remediation is needed for the two mine sites, especially at Ameka.

Role of sacred groves in southwestern Nigeria in biodiversity conservation, biomass and carbon storage.

Sacred groves are remnants of primary forests with rich biological diversity, protected by indigenous communities. Their role in carbon sequestration and provision of other ecosystem services is being recognized. We investigated four sacred groves (Idanre Hills, Igbo-Olodumare, Ogun-Onire, and Osun-Osogbo) in southwestern Nigeria for biodiversity conservation, biomass production, and carbon storage. A total of 32 temporary sample plots of 800 m2 each were laid across all the sacred groves. Within each plot, all trees with dbh greater or equal to 10 cm were identified, and their diameters and heights measured. Saplings and seedlings were assessed within 100 m2 and 25 m2 sub-plots, respectively. Non-destructive methods were employed in estimating volume, biomass production, and carbon storage. Shannon-Wiener diversity index, Margalef index, and tree species richness in the four groves ranged from 2.63-3.55, 5.64-10.02, and 41-85, respectively, and differed significantly. The four groves were sanctuaries for many indigenous tree species of immense social, religious, ecological, and socio-economic importance. The high densities of seedling and sapling, together with the inverted-J tree diameter distributions, are indications of active regeneration and healthy ecosystem. Mean volume was high (range 244.99 to 343.08 m3 ha-1). The biomass (range 87.8 to 231.85 t ha-1) and carbon stock (range 43.9 to 115.9 t ha-1) of the groves revealed their potentials for climate change mitigation through atmospheric CO2 sequestration. Thus, besides being an effective biodiversity conservation method, sacred groves are important carbon sink. This calls for further conservation of sacred groves to serve as long-term carbon storage mechanism.