A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species.

The order Eurotiales is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of species difficult. This situation improved and stabilised with recent taxonomic and nomenclatural revisions that modernised Aspergillus, Penicillium and Talaromyces. This was mainly due to the availability of curated accepted species lists and the publication of comprehensive DNA sequence reference datasets. This has also led to a sharp increase in the number of new species described each year with the accepted species lists in turn also needing regular updates. The focus of this study was to review the 160 species described between the last list of accepted species published in 2020 until 31 December 2022. To review these species, single-gene phylogenies were constructed and GCPSR (Genealogical Concordance Phylogenetic Species Recognition) was applied. Multi-gene phylogenetic analyses were performed to further determine the relationships of the newly introduced species. As a result, we accepted 133 species (37 Aspergillus, two Paecilomyces, 59 Penicillium, two Rasamsonia, 32 Talaromyces and one Xerochrysium), synonymised 22, classified four as doubtful and created a new combination for Paraxerochrysium coryli, which is classified in Xerochrysium. This brings the number of accepted species to 453 for Aspergillus, 12 for Paecilomyces, 535 for Penicillium, 14 for Rasamsonia, 203 for Talaromyces and four for Xerochrysium. We accept the newly introduced section Tenues (in Talaromyces), and series Hainanici (in Aspergillus sect. Cavernicolarum) and Vascosobrinhoana (in Penicillium sect. Citrina). In addition, we validate the invalidly described species Aspergillus annui and A. saccharicola, and series Annuorum (in Aspergillus sect. Flavi), introduce a new combination for Dichlaena lentisci (type of the genus) and place it in a new section in Aspergillus subgenus Circumdati, provide an updated description for Rasamsonia oblata, and list excluded and recently synonymised species that were previously accepted. This study represents an important update of the accepted species lists in Eurotiales. Taxonomic novelties: New sections: Aspergillus section Dichlaena Visagie, Kocsubé & Houbraken. New series: Aspergillus series Annuorum J.J. Silva, B.T. Iamanaka, Frisvad. New species: Aspergillus annui J.J. Silva, M.H.P. Fungaro, Frisvad, M.H. Taniwaki & B.T. Iamanaka; Aspergillus saccharicola J.J. Silva, Frisvad, M.H.P. Fungaro, M.H. Taniwaki & B.T. Iamanaka. New combinations: Aspergillus lentisci (Durieu & Mont.) Visagie, Malloch, L. Kriegsteiner, Samson & Houbraken; Xerochrysium coryli (Crous & Decock) Visagie & Houbraken. Citation: Visagie CM, Yilmaz N, Kocsubé S, Frisvad JC, Hubka V, Samson RA, Houbraken J (2024). A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species. Studies in Mycology 107: 1-66. doi: 10.3114/sim.2024.107.01.

Rapid, recurring, structured survey versus bioblitz for generating biodiversity data and analysis with a multispecies abundance model.

A bioblitz inexpensively and quickly generates biodiversity data, but bioblitzes are often conducted with haphazard, unreplicated sampling. Results tend to be taxonomically, geographically, or temporally biased, lack metadata, and consist of lists of observed taxa that do not enable further analyses or correction for imperfect detection. A rapid, recurring, structured survey (RRSS) uses a structured sampling design and temporal and spatial replication to survey randomly selected sites on a conservation property. We participated in a loosely structured bioblitz and a subsequent RRSS at Big Canoe Creek Nature Preserve in Springville (St. Clair County), Alabama (USA) to compare observed richness derived from the 2 survey approaches. The RRSS data structure enabled us to fit models that accounted for imperfect detection to estimate abundances, occupancy probabilities, and habitat associations. The loosely structured bioblitz data could not be used in such models. We present a new integrated multispecies abundance model that we applied to avian RRSS data. Our model extension enables estimation for the community, employs data augmentation to estimate the number of undetected species, and incorporates covariates. The RRSS generated a more comprehensive and less biased list of observed taxonomic richness than the loosely structured bioblitz (e.g., 73 vs. 45 bird species and 104 vs. 63 insect families from the RRSS vs. loosely structured bioblitz, respectively). Models fit to the RRSS data identified seasonal patterns in avian community composition and allowed for estimation of habitat-occupancy relationships for insect taxa. The RRSS protocol has potential for broad transferability as a standardized, quick, and inexpensive way to inventory biodiversity and estimate ecological parameters while providing an outreach opportunity.

Un bioblitz genera información sobre la biodiversidad de manera rápida y económica, pero con frecuencia se realizan con muestreos irregulares e irrepetibles. Además, los resultados tienden a estar sesgados taxonómica, geográfica o temporalmente, carecen de metadatos y consisten en una lista de taxones observados que no permiten análisis más profundos o la corrección de las detecciones imperfectas. Un censo rápido, recurrente y estructurado (CRRE) usa un diseño de muestreo estructurado y la replicación temporal y espacial para censar los sitios seleccionados al azar en una propiedad de conservación. Participamos en un bioblitz ligeramente estructurado y en un CRRE subsecuente en la reserva natural Big Canoe Creek en Springville, condado St. Clair, Alabama, EUA, para comparar la riqueza observada derivada de las dos estrategias de censo. La estructura de datos del CRRE nos permitió ajustar los modelos que explicaban la detección imperfecta para estimar abundancias, probabilidades de ocupación y asociaciones de hábitat. No pudimos usar los datos del bioblitz en dichos modelos. Presentamos un nuevo modelo de abundancia multiespecie que aplicamos a los datos ornitológicos del CRRE. Nuestra extensión del modelo permite la estimación de la comunidad, usa el aumento de datos para estimar el número de especies no detectadas e incorpora las covariables. El CRRE generó una lista más completa y menos sesgada de la riqueza taxonómica observada que el bioblitz (73 especies de aves versus 45 y 104 familias de insectos versus 63, respectivamente). Los modelos ajustados a los datos del CRRE identificaron patrones estacionales en la composición de la comunidad ornitológica y permitieron la estimación de las relaciones de ocupación de hábitat de los taxones de insectos. El protocolo del CRRE tiene potencial para usarse de manera general como un método de inventario de la biodiversidad estandarizado, rápido y económico y para estimar los parámetros ecológicos a la vez que proporciona una oportunidad de divulgación.

Genetic rescue remains underused for aiding recovery of federally listed vertebrates in the United States.

Restoring gene flow among fragmented populations is discussed as a potentially powerful management strategy that could reduce inbreeding depression and cause genetic rescue. Yet, examples of assisted migration for genetic rescue remain sparse in conservation, prompting several outspoken calls for its increased use in genetic management of fragmented populations. We set out to evaluate the extent to which this strategy is underused and to determine how many imperiled species would realistically stand to benefit from genetic rescue, focusing on federally threatened or endangered vertebrate species in the United States. We developed a "genetic rescue suitability index (GR index)" based on concerns about small population problems relative to risks associated with outbreeding depression and surveyed the literature for 222 species. We found that two-thirds of these species were good candidates for consideration of assisted migration for the purpose of genetic rescue according to our suitability index. Good candidate species spanned all taxonomic groups and geographic regions, though species with more missing data tended to score lower on the suitability index. While we do not recommend a prescriptive interpretation of our GR index, we used it here to establish that assisted migration for genetic rescue is an underused strategy. For example, we found in total, "genetic rescue" was only mentioned in 11 recovery plans and has only been implemented in 3 of the species we surveyed. A potential way forward for implementation of this strategy is incorporating genetic rescue as a priority in USFWS recovery documentation. In general, our results suggest that although not appropriate for all imperiled species, many more species stand to benefit from a conservation strategy of assisted migration for genetic rescue than those for which it has previously been considered or implemented.

Bats (Mammalia, Chiroptera) and bat flies (Diptera, Streblidae) from the Cazumbá-Iracema and Chico Mendes Reserve, Western Brazilian Amazon.

Bats belong to the order Chiroptera and are composed of 18 families, 202 genera, and 1420 species. Cosmopolitans, they have a high diversity of trophic and behavioral guilds, several ecosystem services, and intraspecific associations with ectoparasites. In Brazil, 68 species of Streblidae have already been recorded, although knowledge about the bat fauna and their ectoparasites is still low. Thus, the objective was to present a list of bat species, and to relate parasites with hosts, for two extractive reserves in the state of Acre, western Brazilian Amazon. The collections took place in ten nights, five in each RESEX, both carried out in August 2019. At each point, 10 mist nets (9 m × 2.5 m) were used, remaining open for 6 h. The captured bats were stored in cotton bags and had their data collected. Subsequently, the search for ectoparasites was carried out throughout the individual's body and extracted with brushes moistened with 96% ethyl alcohol and fine-tipped tweezers. Species of flies were identified to the lowest taxonomic level through specific bibliography. Thirty-three bats from six trophic guilds and 46 ectoparasitic dipterans were sampled, all from the Streblidae family. The most abundant bat family was Phyllostomidae, a recurring result in several studies carried out in the neotropical region. This is related to the selectivity of the mist net in bat sampling, in addition to a close correlation between Phyllostomidae bats and ectoparasitic flies of the Streblidae family.

Amphibian survey of Ko Pha-gnan in Surat Thani Province, Thailand.

Insular amphibian species are often overlooked, rendering them vulnerable to habitat encroachment and other anthropogenic threats. The aim of this study was to compile a comprehensive list of amphibian species on Ko Pha-ngan in Surat Thani Province, Thailand. Data were collected via transect surveys and drift line fence traps in three different habitat types from February 2021 to September 2023. Our efforts detected 12 unique amphibian species in each of the three habitat types. The highest number of detections was observed in the Ko Pha-ngan-Than Sadet National Park protected areas. The common tree frog (Polypedatesleucomystax) and the common Asian toad (Duttaphrynusmelanostictus) were the two most abundantly found species on the island, whereas the Koh Tao caecilian (Ichthyophiskohtaoensis) and the newly described false Doria's fanged frog (Limnonectespseudodoriae) where the least commonly found species. In addition, Microhylaheymonsi and Fejervaryalimnocharis tadpoles were observed developing in high-salinity water bodies. Many species have shown a high tolerance in human-dominated landscapes. This study sheds light on the need for additional monitoring to better understand the dynamics of endemic species in addition to the impact tourism-driven development and habitat destruction has on a species with an insularly finite habitat.

Updated distributional checklist of the genus Pytho Latreille, 1796 of the Palearctic realm with the first records of P.abieticola J. R. Sahlberg, 1875 from Lithuania and the family Pythidae (Coleoptera) from Moldova and Serbia.

Background: Pytho Latreille, 1796 is a small genus of the dead log bark beetles (Coleoptera, Pythidae). All species are distributed in the Holarctic, being recognised as typically boreal taxa, but knowledge about the geographical ranges of particular taxa is far from complete. New information: The updated distributional checklist of the genus Pytho of the Palearctic is given, based on literature and new records, including citizen-scientific data. Pythodepressus and the family Pythidae are recorded for the first time from the Republic of Moldova (Municipality of Chișinau) and the Republic of Serbia (Municipality of Vozdovac) and P.abieticola is recorded for the first time from Lithuania (Alytus District Municipality, Ignalina District Municipality and Kaisiadorys District Municipality).

Tick (Acari: Ixodoidea) fauna and zoogeographic division of Jiangxi Province, China.

Tick fauna and zoogeographic distribution of Jiangxi Province remain largely unknown due to the lack of data on distribution, occurrence, and host associations of ticks. Considering this, we collected 1,817 individual samples from natural hosts, humans, and vegetation in 18 counties/districts throughout Jiangxi Province, China, from 2015 to 2021. These 1,817 individuals were found to 13 tick species, 4 genera, and 1 family. In addition, the tick sample data from 8 sampling localities (counties and districts) reported in previous studies were also included in our data. A total of 4,021 individuals, including our sample collection and the previously reported data, were assigned to at least 18 species, 6 genera, and 2 families. One newly recorded species Dermacentor sp. (near D. steini Schulze) was found; three misidentified species (Ixodes acuminatus, Haemaphysalis spinigera, and Haemaphysalis verticalis) reported previously were deleted; and one misidentified species Dermacentor auratus Supino was revised as Dermacentor steini Schulze. In addition, we divided the tick fauna in Jiangxi Province into 5 zoogeographic areas and assigned the 18 tick species collected from 26 localities to these 5 zoogeographic areas. To summarize, our findings provide valuable information on the distribution, tick-host associations, and zoogeographic division of ticks in Jiangxi Province, China. Their molecular characterizations, phylogenetic relationships, and tick-borne pathogens that they may transmit should be further explored.

An updated catalogue of biting midges of the genus Culicoides Latreille, 1809 (Diptera, Ceratopogonidae) of Mexico and their known distribution by state.

An updated catalogue of Culicoides of Mexico is presented. It includes 86 species with their regional distribution and corresponding record references, known immature stages and associated pathogens. In addition, a taxonomic key for subgenera and species groups for Mexico is presented and an index of species by state is included.

U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals.

The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies. Although these packages can be used to generate phylogenetic trees for any groups of plants and animals for which megatrees are available, they focus on generating phylogenetic trees for plants based on the megatrees provided by the packages. How to use these packages to generate phylogenetic trees based on other megatrees is not straightforward. Here, we present a new tool, which is called 'U.PhyloMaker', and a simple R script that can be used to easily generate large phylogenetic trees for both plants and animals at a relatively fast speed.

An updated world checklist of velvet worms (Onychophora) with notes on nomenclature and status of names.

More than a decade has passed since the publication of the only world checklist available for Onychophora. During this period, numerous nomenclatural acts and taxonomic changes have been suggested within the group and a wealth of novel data has been published on many taxa. Herein, the up-to-date taxonomic scenario within Onychophora is presented, with appraisal of name status. This checklist covers both extant (Peripatidae and Peripatopsidae) and fossil taxa, and each species is accompanied by information on synonyms, type designation, holotype location, type locality, and language of original description. Additional remarks include nomenclatural inconsistencies, synonymizations, name misspellings, conflicting collecting event data, availability of taxonomically informative molecular data, etc. According to the data, 237 species are currently assigned to Onychophora: 140 of Peripatopsidae, 92 of Peripatidae, and five fossil species with unclear relationship to extant taxa. Since the previous checklist, 37 species have been added to Onychophora, representing an increase of 18.5% in the diversity described for the group. Yet, taxonomic descriptions seem slow-paced, with an average of 3.6 onychophoran species being described annually. From the taxonomic standpoint, 216 species are valid, although many of them require morphological revision and molecular characterization; 21 species exhibit major taxonomic ambiguities and have been regarded as nomina dubia. Recurrent taxonomic issues identified in the literature include inaccurate collecting event data, doubtful taxonomic assignment of molecular sequences, and non-observance of nomenclatural rules. These and other taxonomic aspects are addressed herein in the light of the directives established by the International Code of Zoological Nomenclature.

Pinniped (Carnivora, Phocidae) occurrences in the Azores Archipelago (NE Atlantic).

Background: The last Pinniped species update was in 2010, as part of the list of the terrestrial and marine biota from the Azores. This list includes a chapter dedicated to marine mammals, based on previously published bibliography. New information: No new species were added since that list was publlished. However, there were new occurrences since the last update.

New records of Curculionoidea from Newfoundland and Labrador, with the first records of Orthochaetessetiger ([Beck]) (Curculionidae, Curculioninae, Styphlini) for North America.

Thirty species of Curculionoidea (28 Curculionidae and one each of Brentidae and Nemonychidae) are reported as new records from the Canadian province of Newfoundland and Labrador, most of them from the island of Newfoundland. As well, 13 species of Curculionidae and one of Brentidae previously recorded from Newfoundland are newly reported from Labrador, and one Curculionidae previously recorded from Labrador is newly reported from Newfoundland. The Palearctic species, Orthochaetessetiger ([Beck]), is herein reported as a new Canadian and North American record, with specimens documented from Newfoundland and British Columbia. Additions to the primary key for North American weevils are provided to help identify this genus among the North American fauna. Of the species of Curculionoidea previously recorded from the province in published literature, there is uncertain evidence for the occurrence of 14 species in the province as a whole or in the Labrador portion. Seven species are hereby removed from the faunal list for the province. One of those, Trachodeshispidus (Linnaeus), is also removed from the Canadian faunal list. The 134 species of Curculionoidea recorded from NL are listed and a brief synopsis of the fauna provided.

Global patterns of fern species diversity: An evaluation of fern data in GBIF.

Despite that several studies have shown that data derived from species lists generated from distribution occurrence records in the Global Biodiversity Information Facility (GBIF) are not appropriate for those ecological and biogeographic studies that require high sampling completeness, because species lists derived from GBIF are generally very incomplete, Suissa et al. (2021) generated fern species lists based on data with GBIF for 100 km × 100 km grid cells across the world, and used the data to determine fern diversity hotspots and species richness-climate relationships. We conduct an evaluation on the completeness of fern species lists derived from GBIF at the grid-cell scale and at a larger spatial scale, and determine whether fern data derived from GBIF are appropriate for studies on the relations of species composition and richness with climatic variables. We show that species sampling completeness of GBIF is low (<40%) for most of the grid cells examined, and such low sampling completeness can substantially bias the investigation of geographic and ecological patterns of species diversity and the identification of diversity hotspots. We conclude that fern species lists derived from GBIF are generally very incomplete across a wide range of spatial scales, and are not appropriate for studies that require data derived from species lists in high completeness. We present a map showing global patterns of fern species diversity based on complete or nearly complete regional fern species lists.

V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants.

An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical, biogeographical and ecological studies. Here, we update and enlarge this package, which is now called 'V.PhyloMaker2'. With V.PhyloMaker2, one can generate a phylogenetic tree for vascular plants based on one of three different botanical nomenclature systems. V.PhyloMaker2 can generate phylogenies for very large species lists (the largest species list that we tested included 365,198 species). V.PhyloMaker2 generates phylogenies at a fast speed. We provide an example (including a sample species list and an R script to run it) in this paper to show how to use V.PhyloMaker2 to generate phylogenetic trees.

Seed Menus: An integrated decision-support framework for native plant restoration in the Mojave Desert.

The combination of ecosystem stressors, rapid climate change, and increasing landscape-scale development has necessitated active restoration across large tracts of disturbed habitats in the arid southwestern United States. In this context, programmatic directives such as the National Seed Strategy for Rehabilitation and Restoration have increasingly emphasized improved restoration practices that promote resilient, diverse plant communities, and enhance native seed reserves. While decision-support tools have been implemented to support genetic diversity by guiding seed transfer decisions based on patterns in local adaptation, less emphasis has been placed on identifying priority seed mixes composed of native species assemblages. Well-designed seed mixes can provide foundational ecosystem services including resilience to disturbance, resistance to invasive species, plant canopy structure to facilitate natural seedling recruitment, and habitat to support wildlife and pollinator communities. Drawing from a newly developed dataset of species distribution models for priority native plant taxa in the Mojave Desert, we created a novel decision support tool by pairing spatial predictions of species habitat with a database of key species traits including life history, flowering characteristics, pollinator relationships, and propagation methods. This publicly available web application, Mojave Seed Menus, helps restoration practitioners generate customized seed mixes for native plant restoration in the Mojave Desert based on project locations. Our application forms part of an integrated Mojave Desert restoration program designed to help practitioners identify species to include in local seed mixes and nursery stock development while accounting for local adaptation by identifying appropriate seed source locations from key restoration species.

Updated checklist of Azores Chondrichthyes (Vertebrata: Gnathostomata).

Background: Several lists of marine fish from Azores have been published in the past. Most of those publications are difficult to access on line and several were not published in peer-reviewed journals. New information: This checklist updates all the chondrichthyan records for the Azores Exclusive Economic Zone (EEZ), according to the most recent taxonomic classification of cartilaginous fish, as well as providing information on the conservation status for all species. We also present recent literature data on rare species and recent records for Azores. This is the first comprehensive list of cartilaginous fishes from Azores to be published in the GBIF database.

Data on taxa composition of freshwater zooplankton and meiobenthos across Arctic regions of Russia.

We present the presence/absence species list (Table 1) of rotifer, cladoceran, and copepod (Calanoida, Harpacticoida, and Cyclopoida) fauna from seven Arctic regions of Russia (the Kola Peninsula, the Pechora River Delta, the Bolshezemelskaya tundra, the Polar Ural, the Putorana Plateau, the Lena River Delta, and the Indigirka River Basin) based on our own and literature data. Our own records were obtained by analyzing samples of zooplankton, meiobenthos, and two cores of bottom sediments (from the Kola Peninsula and the Bolshezemelskaya tundra lakes) that we collected once in July or August in 1992, 1995-2017. To supplement the list, we used relevant literature with periods of research from the 1960s to the 2010s. The list is almost identical to "Dataset 2: Zooplankton and Meiofauna across Arctic Regions of Russia", which was analyzed but not published in [1]. The detailed analysis of this list revealed the specific composition of the aquatic fauna associated with the climatic and geographical factors [1]. The data provide information on the current state of biodiversity and species richness in Arctic fresh waters and can serve as the basis for monitoring these environments and predicting how they are likely to change in the future.

Six new species of Horniella Raffray from the Oriental region (Coleoptera, Staphylinidae, Pselaphinae).

The Oriental pselaphine genus Horniella Raffray, 1905 currently contains 29 species. In this paper, six new species are described: H. nantouensis Zhang, Hu & Yin, sp. nov. and H. taiwanensis Zhang, Hu & Yin, sp. nov. from Taiwan, China; H. bifurca Zhang & Yin, sp. nov. and H. haucki Zhang & Yin, sp. nov. from Thailand; H. khasiensis Zhang & Yin, sp. nov. from northern India; and H. sabahensis Zhang & Yin, sp. nov. from eastern Malaysia. In addition, H. aculeata Yin & Li, 2015, originally described from Yunnan, China, is newly recorded from Thailand.

A new subterranean species and an updated checklist of Strumigenys (Hymenoptera, Formicidae) from Macao SAR, China, with a key to species of the Greater Bay Area.

In the past few decades, sampling of leaf litter with Winkler extractors revealed how abundant and ubiquitous ants from the genus Strumigenys are. It is now known that this genus has the third greatest number of species within the Formicidae family. However, very few subterranean species are known, which may be due to the current under-sampling of the soil stratum. Here, a holistic sampling approach, including the use of subterranean traps, was employed in Macao SAR, China. Subterranean traps allowed the collection of a new cryptic ant species: Strumigenys subterranea Brassard, Leong & Guénard, sp. nov. Moreover, extensive sampling of the leaf litter in secondary forests provided four new species records for the genus. The list of Macanese Strumigenys is here updated, elevating the known diversity in Macao to nine species. Furthermore, to facilitate further research on ants of the Guangdong-Hong Kong-Macao Greater Bay Area, a key to the 29 Strumigenys species known from the region is provided. Lastly, recommendations for sampling methods to assess ant biodiversity underground are discussed. In conclusion, this study highlights the importance of using extensive sampling methods, and suggests that relatively small patches of secondary forests within cities can hold a surprisingly high diversity as well as some undescribed species.

Annotated list of island lady beetles from Chile (Coleoptera: Coccinellidae).

We provide a list of coccinellids (Coleoptera: Coccinellidae) species from the island territories of Chile. We report a total of 68 records, coming from ten islands, including 42 species corresponding to more than 35% of the species of the country. This paper presents the first Coccinellidae records for the Islas Desventuradas, Isla Mocha and Isla Tenglo. Contrary to what has been reported on other islands and other taxonomic groups in Chilean islands, the level of coccinellid endemism is low (8%), with only one and two species endemic to the Juan Fernández archipelago and Isla de Chiloé, respectively, and probably a fourth species from the Isla Grande de Tierra del Fuego. The presence of species with worldwide distribution and of agricultural relevance is strong in the Chilean oceanic islands, particularly in Rapa Nui. The fauna of the continental islands is very similar to the one in the nearby continental areas and composed of native species. Further surveys of Coccinellidae and other insects are required for the islands of Chile, especially for several of them in which there are no records.